RNA–Protein interactions for RNA: ENST00000560519.1

HERC1-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-209ENST00000560519 MSH6P52701 1360 aa15□□□□□ -0.01
HERC1-209ENST00000560519 SLC52A1Q9NWF4 448 aa15□□□□□ -0.01
HERC1-209ENST00000560519 ANKRD50Q9ULJ7 1429 aa15□□□□□ -0.01
HERC1-209ENST00000560519 E9PCH4 1651 aa15□□□□□ -0.01
HERC1-209ENST00000560519 IQGAP3Q86VI3 1631 aa14.99□□□□□ -0.01
HERC1-209ENST00000560519 KCNA6P17658 529 aa14.99□□□□□ -0.01
HERC1-209ENST00000560519 IDI1Q13907 227 aa14.98□□□□□ -0.01
HERC1-209ENST00000560519 ZFYVE9O95405 1425 aa14.98□□□□□ -0.01
HERC1-209ENST00000560519 PLEKHG1Q9ULL1 1385 aa14.98□□□□□ -0.01
HERC1-209ENST00000560519 SETD1AO15047 1707 aaKnown RBP14.97□□□□□ -0.01
HERC1-209ENST00000560519 COL16A1Q07092 1604 aaPredicted RBP14.96□□□□□ -0.01
HERC1-209ENST00000560519 CHIC2Q9UKJ5 165 aa14.96□□□□□ -0.01
HERC1-209ENST00000560519 SHPRHQ149N8 1683 aa14.95□□□□□ -0.02
HERC1-209ENST00000560519 RIMS2Q9UQ26 1411 aa14.94□□□□□ -0.02
HERC1-209ENST00000560519 NCOA3Q9Y6Q9 1424 aa14.94□□□□□ -0.02
HERC1-209ENST00000560519 TRPM2O94759 1503 aa14.94□□□□□ -0.02
HERC1-209ENST00000560519 HDGFP51858 240 aaKnown RBP14.94□□□□□ -0.02
HERC1-209ENST00000560519 PROSER2Q86WR7 435 aaPredicted RBP14.94□□□□□ -0.02
HERC1-209ENST00000560519 SLC26A8Q96RN1 970 aa14.94□□□□□ -0.02
HERC1-209ENST00000560519 SPHKAPQ2M3C7 1700 aa14.93□□□□□ -0.02
HERC1-209ENST00000560519 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.93□□□□□ -0.02
HERC1-209ENST00000560519 BCANQ96GW7 911 aa14.93□□□□□ -0.02
HERC1-209ENST00000560519 AHDC1Q5TGY3 1603 aaPredicted RBP14.92□□□□□ -0.02
HERC1-209ENST00000560519 PPP1R15AO75807 674 aaPredicted RBP14.92□□□□□ -0.02
HERC1-209ENST00000560519 JCADQ9P266 1359 aa14.91□□□□□ -0.02
HERC1-209ENST00000560519 PIK3R4Q99570 1358 aa14.9□□□□□ -0.02
HERC1-209ENST00000560519 FAM50AQ14320 339 aaKnown RBP14.9□□□□□ -0.02
HERC1-209ENST00000560519 ROCK1Q13464 1354 aa14.89□□□□□ -0.03
HERC1-209ENST00000560519 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.89□□□□□ -0.03
HERC1-209ENST00000560519 RGS17Q9UGC6 210 aaPredicted RBP14.89□□□□□ -0.03
HERC1-209ENST00000560519 XRN1Q8IZH2 1706 aaKnown RBP14.88□□□□□ -0.03
HERC1-209ENST00000560519 SETBP1Q9Y6X0 1596 aa14.86□□□□□ -0.03
HERC1-209ENST00000560519 DCCP43146 1447 aa14.86□□□□□ -0.03
HERC1-209ENST00000560519 SLAIN2Q9P270 581 aa14.86□□□□□ -0.03
HERC1-209ENST00000560519 NHSL1Q5SYE7 1610 aa14.85□□□□□ -0.03
HERC1-209ENST00000560519 ADAMTS13Q76LX8 1427 aa14.85□□□□□ -0.03
HERC1-209ENST00000560519 RBM33Q96EV2 1170 aaKnown RBP14.85□□□□□ -0.03
HERC1-209ENST00000560519 TBX22Q9Y458 520 aa14.85□□□□□ -0.03
HERC1-209ENST00000560519 SPATA31A6Q5VVP1 1343 aa14.85□□□□□ -0.03
HERC1-209ENST00000560519 NRXN3Q9Y4C0 1643 aa14.84□□□□□ -0.03
HERC1-209ENST00000560519 C14orf37Q86TY3 774 aa14.83□□□□□ -0.04
HERC1-209ENST00000560519 CADPS2Q86UW7 1296 aa14.83□□□□□ -0.04
HERC1-209ENST00000560519 KIF1BO60333 1816 aa14.82□□□□□ -0.04
HERC1-209ENST00000560519 CHGAP10645 457 aaKnown RBP14.82□□□□□ -0.04
HERC1-209ENST00000560519 POTEAQ6S8J7 498 aa14.82□□□□□ -0.04
HERC1-209ENST00000560519 LRP6O75581 1613 aa14.81□□□□□ -0.04
HERC1-209ENST00000560519 ASXL1Q8IXJ9 1541 aa14.81□□□□□ -0.04
HERC1-209ENST00000560519 NALCNQ8IZF0 1738 aa14.8□□□□□ -0.04
HERC1-209ENST00000560519 ATF3P18847 181 aa14.8□□□□□ -0.04
HERC1-209ENST00000560519 MEX3CQ5U5Q3 659 aaKnown RBP14.78□□□□□ -0.04
HERC1-209ENST00000560519 C19orf44Q9H6X5 657 aa14.78□□□□□ -0.04
HERC1-209ENST00000560519 NUP155O75694 1391 aa14.77□□□□□ -0.04
HERC1-209ENST00000560519 ZNF772Q68DY9 489 aaPredicted RBP14.77□□□□□ -0.05
HERC1-209ENST00000560519 CLTCL1P53675 1640 aa14.77□□□□□ -0.05
HERC1-209ENST00000560519 NEXMIFQ5QGS0 1516 aa14.76□□□□□ -0.05
HERC1-209ENST00000560519 CDK12Q9NYV4 1490 aaPredicted RBP14.76□□□□□ -0.05
HERC1-209ENST00000560519 PTPRUQ92729 1446 aa14.75□□□□□ -0.05
HERC1-209ENST00000560519 LAMC1P11047 1609 aa14.74□□□□□ -0.05
HERC1-209ENST00000560519 SETD5Q9C0A6 1442 aa14.74□□□□□ -0.05
HERC1-209ENST00000560519 MST1RQ04912 1400 aa14.73□□□□□ -0.05
HERC1-209ENST00000560519 ADGRL3Q9HAR2 1447 aa14.73□□□□□ -0.05
HERC1-209ENST00000560519 NUTM2DQ5VT03 806 aaPredicted RBP14.72□□□□□ -0.05
HERC1-209ENST00000560519 AMOTL2Q9Y2J4 779 aa14.72□□□□□ -0.05
HERC1-209ENST00000560519 BRINP3Q76B58 766 aa14.7□□□□□ -0.06
HERC1-209ENST00000560519 PTCH1Q13635 1447 aa14.69□□□□□ -0.06
HERC1-209ENST00000560519 PPLO60437 1756 aa14.69□□□□□ -0.06
HERC1-209ENST00000560519 ZNF326Q5BKZ1 582 aaKnown RBP14.68□□□□□ -0.06
HERC1-209ENST00000560519 PRAG1Q86YV5 1406 aa14.67□□□□□ -0.06
HERC1-209ENST00000560519 COL22A1Q8NFW1 1626 aaPredicted RBP14.66□□□□□ -0.06
HERC1-209ENST00000560519 METP08581 1390 aa14.66□□□□□ -0.06
HERC1-209ENST00000560519 ITGAEP38570 1179 aa14.66□□□□□ -0.06
HERC1-209ENST00000560519 RXRBP28702 533 aa14.65□□□□□ -0.06
HERC1-209ENST00000560519 TRIM52Q96A61 297 aa14.65□□□□□ -0.06
HERC1-209ENST00000560519 MARF1Q9Y4F3 1742 aaKnown RBP14.65□□□□□ -0.06
HERC1-209ENST00000560519 CDC42BPGQ6DT37 1551 aa14.64□□□□□ -0.07
HERC1-209ENST00000560519 LRRC59Q96AG4 307 aaKnown RBP14.64□□□□□ -0.07
HERC1-209ENST00000560519 PNPLA6Q8IY17 1366 aa14.63□□□□□ -0.07
HERC1-209ENST00000560519 NUTM2BA6NNL0 878 aaPredicted RBP14.63□□□□□ -0.07
HERC1-209ENST00000560519 NUTM2EB1AL46 878 aaPredicted RBP14.63□□□□□ -0.07
HERC1-209ENST00000560519 NUTM2AQ8IVF1 878 aaPredicted RBP14.63□□□□□ -0.07
HERC1-209ENST00000560519 RRBP1Q9P2E9 1410 aaKnown RBP14.63□□□□□ -0.07
HERC1-209ENST00000560519 AFF2P51816 1311 aa14.63□□□□□ -0.07
HERC1-209ENST00000560519 RGS12O14924 1447 aa14.62□□□□□ -0.07
HERC1-209ENST00000560519 KNDC1Q76NI1 1749 aa14.62□□□□□ -0.07
HERC1-209ENST00000560519 UPF1Q92900 1129 aaKnown RBP eCLIP14.62□□□□□ -0.07
HERC1-209ENST00000560519 IFT172Q9UG01 1749 aa14.62□□□□□ -0.07
HERC1-209ENST00000560519 C1orf167Q5SNV9 1468 aa14.62□□□□□ -0.07
HERC1-209ENST00000560519 NAIPQ13075 1403 aa14.61□□□□□ -0.07
HERC1-209ENST00000560519 HFM1A2PYH4 1435 aa14.6□□□□□ -0.07
HERC1-209ENST00000560519 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.58□□□□□ -0.07
HERC1-209ENST00000560519 VGFO15240 615 aaPredicted RBP14.58□□□□□ -0.08
HERC1-209ENST00000560519 C8orf37Q96NL8 207 aa14.58□□□□□ -0.08
HERC1-209ENST00000560519 KIF1AQ12756 1690 aa14.58□□□□□ -0.08
HERC1-209ENST00000560519 RBM6P78332 1123 aaKnown RBP14.56□□□□□ -0.08
HERC1-209ENST00000560519 RPGRIP1LQ68CZ1 1315 aa14.56□□□□□ -0.08
HERC1-209ENST00000560519 NGLY1Q96IV0 654 aa14.55□□□□□ -0.08
HERC1-209ENST00000560519 ROBO2Q9HCK4 1378 aa14.55□□□□□ -0.08
HERC1-209ENST00000560519 ATAD2Q6PL18 1390 aa14.54□□□□□ -0.08
HERC1-209ENST00000560519 FMN2Q9NZ56 1722 aa14.54□□□□□ -0.08
HERC1-209ENST00000560519 SOS2Q07890 1332 aaPredicted RBP14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms