RNA–Protein interactions for RNA: ENST00000560483.1

LRRC28-219, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 535 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-219ENST00000560483 TCOF1Q13428 1488 aaKnown RBP12.15□□□□□ -0.46
LRRC28-219ENST00000560483 ABCC5O15440 1437 aa12.15□□□□□ -0.46
LRRC28-219ENST00000560483 SEC24BO95487 1268 aa12.15□□□□□ -0.46
LRRC28-219ENST00000560483 ANKRD30AQ9BXX3 1397 aa12.15□□□□□ -0.46
LRRC28-219ENST00000560483 KIF15Q9NS87 1388 aa12.15□□□□□ -0.46
LRRC28-219ENST00000560483 MAST1Q9Y2H9 1570 aa12.13□□□□□ -0.47
LRRC28-219ENST00000560483 WASHC2CQ9Y4E1 1318 aa12.13□□□□□ -0.47
LRRC28-219ENST00000560483 SHANK2Q9UPX8 1470 aa12.13□□□□□ -0.47
LRRC28-219ENST00000560483 PLXNC1O60486 1568 aa12.13□□□□□ -0.47
LRRC28-219ENST00000560483 CLTCQ00610 1675 aaKnown RBP12.13□□□□□ -0.47
LRRC28-219ENST00000560483 CNTLNQ9NXG0 1405 aa12.12□□□□□ -0.47
LRRC28-219ENST00000560483 PLEKHG5O94827 1062 aa12.12□□□□□ -0.47
LRRC28-219ENST00000560483 PCDH10Q9P2E7 1040 aa12.11□□□□□ -0.47
LRRC28-219ENST00000560483 DUOX2Q9NRD8 1548 aa12.11□□□□□ -0.47
LRRC28-219ENST00000560483 TMEM106CQ9BVX2 250 aa12.09□□□□□ -0.47
LRRC28-219ENST00000560483 C3P01024 1663 aa12.09□□□□□ -0.47
LRRC28-219ENST00000560483 ZMYM3Q14202 1370 aa12.08□□□□□ -0.48
LRRC28-219ENST00000560483 KANK1Q14678 1352 aa12.08□□□□□ -0.48
LRRC28-219ENST00000560483 IER5LQ5T953 404 aa12.07□□□□□ -0.48
LRRC28-219ENST00000560483 NCOA1Q15788 1441 aa12.06□□□□□ -0.48
LRRC28-219ENST00000560483 ERBINQ96RT1 1412 aa12.06□□□□□ -0.48
LRRC28-219ENST00000560483 HSPA2P54652 639 aa12.06□□□□□ -0.48
LRRC28-219ENST00000560483 SGIP1Q9BQI5 828 aa12.06□□□□□ -0.48
LRRC28-219ENST00000560483 EIF2AK4Q9P2K8 1649 aaKnown RBP12.06□□□□□ -0.48
LRRC28-219ENST00000560483 KDM5DQ9BY66 1539 aa12.06□□□□□ -0.48
LRRC28-219ENST00000560483 CFAP65Q6ZU64 1925 aaKnown RBP12.05□□□□□ -0.48
LRRC28-219ENST00000560483 SETD1BQ9UPS6 1966 aaKnown RBP12.05□□□□□ -0.48
LRRC28-219ENST00000560483 UHRF1BP1Q6BDS2 1440 aa12.05□□□□□ -0.48
LRRC28-219ENST00000560483 SLAIN1Q8ND83 568 aa12.05□□□□□ -0.48
LRRC28-219ENST00000560483 MROH2AA6NES4 1674 aa12.05□□□□□ -0.48
LRRC28-219ENST00000560483 PREX1Q8TCU6 1659 aa12.04□□□□□ -0.48
LRRC28-219ENST00000560483 ST18O60284 1047 aa12.04□□□□□ -0.48
LRRC28-219ENST00000560483 IRX5P78411 483 aaPredicted RBP12.04□□□□□ -0.48
LRRC28-219ENST00000560483 CDAN1Q8IWY9 1227 aa12.04□□□□□ -0.48
LRRC28-219ENST00000560483 ANKRD50Q9ULJ7 1429 aa12.03□□□□□ -0.48
LRRC28-219ENST00000560483 CEP152O94986 1710 aa12.03□□□□□ -0.48
LRRC28-219ENST00000560483 FKBP8Q14318 412 aa12.03□□□□□ -0.48
LRRC28-219ENST00000560483 PTPRKQ15262 1439 aa12.03□□□□□ -0.48
LRRC28-219ENST00000560483 RRBP1Q9P2E9 1410 aaKnown RBP12.03□□□□□ -0.48
LRRC28-219ENST00000560483 ADGRL2O95490 1459 aa12.02□□□□□ -0.48
LRRC28-219ENST00000560483 RNF17Q9BXT8 1623 aaKnown RBP12.02□□□□□ -0.49
LRRC28-219ENST00000560483 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.02□□□□□ -0.49
LRRC28-219ENST00000560483 FBXO31Q5XUX0 539 aaPredicted RBP12.01□□□□□ -0.49
LRRC28-219ENST00000560483 FAM212AQ96EL1 285 aa12.01□□□□□ -0.49
LRRC28-219ENST00000560483 LMTK3Q96Q04 1460 aa12.01□□□□□ -0.49
LRRC28-219ENST00000560483 ZC3H13Q5T200 1668 aaKnown RBP12□□□□□ -0.49
LRRC28-219ENST00000560483 PYGBP11216 843 aa12□□□□□ -0.49
LRRC28-219ENST00000560483 ROCK1Q13464 1354 aa12□□□□□ -0.49
LRRC28-219ENST00000560483 ABCC3O15438 1527 aa12□□□□□ -0.49
LRRC28-219ENST00000560483 TRIM52Q96A61 297 aa11.99□□□□□ -0.49
LRRC28-219ENST00000560483 TNRQ92752 1358 aa11.99□□□□□ -0.49
LRRC28-219ENST00000560483 NPATQ14207 1427 aa11.99□□□□□ -0.49
LRRC28-219ENST00000560483 FAM135AQ9P2D6 1515 aa11.99□□□□□ -0.49
LRRC28-219ENST00000560483 CAMSAP1Q5T5Y3 1602 aa11.98□□□□□ -0.49
LRRC28-219ENST00000560483 PZPP20742 1482 aa11.98□□□□□ -0.49
LRRC28-219ENST00000560483 PCDHB8Q9UN66 801 aa11.98□□□□□ -0.49
LRRC28-219ENST00000560483 PRDM15P57071 1507 aaPredicted RBP11.97□□□□□ -0.49
LRRC28-219ENST00000560483 PLCG2P16885 1265 aa11.97□□□□□ -0.49
LRRC28-219ENST00000560483 MROH1Q8NDA8 1641 aa11.97□□□□□ -0.49
LRRC28-219ENST00000560483 MYO3AQ8NEV4 1616 aa11.97□□□□□ -0.49
LRRC28-219ENST00000560483 NUP155O75694 1391 aa11.95□□□□□ -0.5
LRRC28-219ENST00000560483 DEPDC5O75140 1603 aa11.95□□□□□ -0.5
LRRC28-219ENST00000560483 CEP170BQ9Y4F5 1589 aaPredicted RBP11.94□□□□□ -0.5
LRRC28-219ENST00000560483 ZBTB47Q9UFB7 747 aaPredicted RBP11.93□□□□□ -0.5
LRRC28-219ENST00000560483 ERVK-7P63135 1459 aa11.92□□□□□ -0.5
LRRC28-219ENST00000560483 CHGAP10645 457 aaKnown RBP11.92□□□□□ -0.5
LRRC28-219ENST00000560483 GCC2Q8IWJ2 1684 aa11.91□□□□□ -0.5
LRRC28-219ENST00000560483 A2ML1A8K2U0 1454 aa11.91□□□□□ -0.5
LRRC28-219ENST00000560483 THEMISQ8N1K5 641 aaPredicted RBP11.91□□□□□ -0.5
LRRC28-219ENST00000560483 UNC13BO14795 1591 aa11.91□□□□□ -0.5
LRRC28-219ENST00000560483 NCKAP5LQ9HCH0 1330 aa11.9□□□□□ -0.5
LRRC28-219ENST00000560483 NAIPQ13075 1403 aa11.9□□□□□ -0.5
LRRC28-219ENST00000560483 DCAF8Q5TAQ9 597 aa11.9□□□□□ -0.5
LRRC28-219ENST00000560483 ZNF142P52746 1687 aaPredicted RBP11.9□□□□□ -0.5
LRRC28-219ENST00000560483 EFCAB6Q5THR3 1501 aa11.9□□□□□ -0.5
LRRC28-219ENST00000560483 NLRP1Q9C000 1473 aa11.89□□□□□ -0.51
LRRC28-219ENST00000560483 UGGT1Q9NYU2 1555 aa11.89□□□□□ -0.51
LRRC28-219ENST00000560483 HFM1A2PYH4 1435 aa11.89□□□□□ -0.51
LRRC28-219ENST00000560483 TET3O43151 1660 aa11.89□□□□□ -0.51
LRRC28-219ENST00000560483 SPATA31D1Q6ZQQ2 1576 aa11.88□□□□□ -0.51
LRRC28-219ENST00000560483 ARHGAP31Q2M1Z3 1444 aa11.88□□□□□ -0.51
LRRC28-219ENST00000560483 LMTK2Q8IWU2 1503 aa11.88□□□□□ -0.51
LRRC28-219ENST00000560483 BCANQ96GW7 911 aa11.88□□□□□ -0.51
LRRC28-219ENST00000560483 IQGAP3Q86VI3 1631 aa11.87□□□□□ -0.51
LRRC28-219ENST00000560483 ANKLE2Q86XL3 938 aa11.87□□□□□ -0.51
LRRC28-219ENST00000560483 PDCD7Q8N8D1 485 aaKnown RBP11.87□□□□□ -0.51
LRRC28-219ENST00000560483 MARVELD3Q96A59 401 aa11.87□□□□□ -0.51
LRRC28-219ENST00000560483 VWDEQ8N2E2 1590 aa11.87□□□□□ -0.51
LRRC28-219ENST00000560483 PKD2Q13563 968 aa11.86□□□□□ -0.51
LRRC28-219ENST00000560483 OCEL1Q9H607 264 aa11.86□□□□□ -0.51
LRRC28-219ENST00000560483 EID1Q9Y6B2 187 aa11.86□□□□□ -0.51
LRRC28-219ENST00000560483 STRCQ7RTU9 1775 aa11.85□□□□□ -0.51
LRRC28-219ENST00000560483 SLC52A1Q9NWF4 448 aa11.85□□□□□ -0.51
LRRC28-219ENST00000560483 E9PCH4 1651 aa11.84□□□□□ -0.51
LRRC28-219ENST00000560483 RPRD2Q5VT52 1461 aaKnown RBP11.84□□□□□ -0.51
LRRC28-219ENST00000560483 PPP1R15AO75807 674 aaPredicted RBP11.84□□□□□ -0.51
LRRC28-219ENST00000560483 IDI1Q13907 227 aa11.84□□□□□ -0.51
LRRC28-219ENST00000560483 PIK3C2BO00750 1634 aa11.84□□□□□ -0.51
LRRC28-219ENST00000560483 SETD5Q9C0A6 1442 aa11.84□□□□□ -0.51
LRRC28-219ENST00000560483 ZNF326Q5BKZ1 582 aaKnown RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms