RNA–Protein interactions for RNA: ENST00000560131.1

TPM1-222, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 537 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-222ENST00000560131 PROX2Q3B8N5 592 aa8.25□□□□□ -1.09
TPM1-222ENST00000560131 ZEB1P37275 1124 aaPredicted RBP8.23□□□□□ -1.09
TPM1-222ENST00000560131 ARID3AQ99856 593 aa8.23□□□□□ -1.09
TPM1-222ENST00000560131 C1orf115Q9H7X2 142 aa8.23□□□□□ -1.09
TPM1-222ENST00000560131 V9GY48 417 aaPredicted RBP8.23□□□□□ -1.09
TPM1-222ENST00000560131 ZCCHC6Q5VYS8 1495 aaKnown RBP8.23□□□□□ -1.09
TPM1-222ENST00000560131 EVI5O60447 810 aa8.22□□□□□ -1.09
TPM1-222ENST00000560131 FECHP22830 423 aa8.22□□□□□ -1.09
TPM1-222ENST00000560131 APBB1O00213 710 aa8.21□□□□□ -1.1
TPM1-222ENST00000560131 TTLL12Q14166 644 aaPredicted RBP8.21□□□□□ -1.1
TPM1-222ENST00000560131 KIAA1468Q9P260 1216 aa8.21□□□□□ -1.1
TPM1-222ENST00000560131 TSR3Q9UJK0 312 aaKnown RBP8.21□□□□□ -1.1
TPM1-222ENST00000560131 DDX12PQ92771 950 aa8.2□□□□□ -1.1
TPM1-222ENST00000560131 PCMTD1Q96MG8 357 aaPredicted RBP8.2□□□□□ -1.1
TPM1-222ENST00000560131 PCGF6Q9BYE7 350 aa8.2□□□□□ -1.1
TPM1-222ENST00000560131 ONECUT3O60422 494 aaPredicted RBP8.19□□□□□ -1.1
TPM1-222ENST00000560131 COL9A1P20849 921 aa8.19□□□□□ -1.1
TPM1-222ENST00000560131 TRIM26Q12899 539 aaPredicted RBP8.19□□□□□ -1.1
TPM1-222ENST00000560131 PTGDRQ13258 359 aa8.19□□□□□ -1.1
TPM1-222ENST00000560131 PDZRN3Q9UPQ7 1066 aa8.19□□□□□ -1.1
TPM1-222ENST00000560131 A6NJR5 290 aa8.18□□□□□ -1.1
TPM1-222ENST00000560131 ARID3CA6NKF2 412 aa8.18□□□□□ -1.1
TPM1-222ENST00000560131 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.18□□□□□ -1.1
TPM1-222ENST00000560131 HPS5Q9UPZ3 1129 aa8.18□□□□□ -1.1
TPM1-222ENST00000560131 GIGYF2Q6Y7W6 1299 aaKnown RBP8.17□□□□□ -1.1
TPM1-222ENST00000560131 MS4A1P11836 297 aa8.16□□□□□ -1.1
TPM1-222ENST00000560131 LRCH3Q96II8 777 aa8.16□□□□□ -1.1
TPM1-222ENST00000560131 SEPT9Q9UHD8 586 aaPredicted RBP8.16□□□□□ -1.1
TPM1-222ENST00000560131 PRIM1P49642 420 aaKnown RBP8.15□□□□□ -1.1
TPM1-222ENST00000560131 PPP1R18Q6NYC8 613 aa8.15□□□□□ -1.1
TPM1-222ENST00000560131 PPARGC1BQ86YN6 1023 aaKnown RBP8.15□□□□□ -1.1
TPM1-222ENST00000560131 TRAK2O60296 914 aa8.14□□□□□ -1.11
TPM1-222ENST00000560131 FAM98CQ17RN3 349 aaKnown RBP8.14□□□□□ -1.11
TPM1-222ENST00000560131 TJAP1Q5JTD0 557 aa8.14□□□□□ -1.11
TPM1-222ENST00000560131 REPIN1Q9BWE0 567 aaKnown RBP8.14□□□□□ -1.11
TPM1-222ENST00000560131 PCDHGA10Q9Y5H3 936 aa8.14□□□□□ -1.11
TPM1-222ENST00000560131 SH3D19Q5HYK7 790 aa8.13□□□□□ -1.11
TPM1-222ENST00000560131 TMUB1Q9BVT8 246 aa8.13□□□□□ -1.11
TPM1-222ENST00000560131 CLCN1P35523 988 aa8.12□□□□□ -1.11
TPM1-222ENST00000560131 FBXW7Q969H0 707 aa8.12□□□□□ -1.11
TPM1-222ENST00000560131 CLUAP1Q96AJ1 413 aa8.12□□□□□ -1.11
TPM1-222ENST00000560131 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.12□□□□□ -1.11
TPM1-222ENST00000560131 PPP4CP60510 307 aa8.11□□□□□ -1.11
TPM1-222ENST00000560131 TYW1BQ6NUM6 668 aa8.11□□□□□ -1.11
TPM1-222ENST00000560131 SKIV2LQ15477 1246 aaKnown RBP8.1□□□□□ -1.11
TPM1-222ENST00000560131 NPDC1Q9NQX5 325 aaPredicted RBP8.1□□□□□ -1.11
TPM1-222ENST00000560131 EPAS1Q99814 870 aa8.09□□□□□ -1.11
TPM1-222ENST00000560131 IL21Q9HBE4 155 aa8.09□□□□□ -1.11
TPM1-222ENST00000560131 GPCPD1Q9NPB8 672 aa8.09□□□□□ -1.11
TPM1-222ENST00000560131 SHROOM4Q9ULL8 1493 aa8.08□□□□□ -1.12
TPM1-222ENST00000560131 TRIM6-TRIM34B2RNG4 842 aa8.08□□□□□ -1.12
TPM1-222ENST00000560131 PDIA4P13667 645 aaKnown RBP8.08□□□□□ -1.12
TPM1-222ENST00000560131 SSTR3P32745 418 aaPredicted RBP8.08□□□□□ -1.12
TPM1-222ENST00000560131 RANGAP1P46060 587 aaPredicted RBP8.08□□□□□ -1.12
TPM1-222ENST00000560131 MCM6Q14566 821 aa8.08□□□□□ -1.12
TPM1-222ENST00000560131 TREML4Q6UXN2 200 aa8.08□□□□□ -1.12
TPM1-222ENST00000560131 PHF14O94880 888 aa8.07□□□□□ -1.12
TPM1-222ENST00000560131 EN1Q05925 392 aaPredicted RBP8.07□□□□□ -1.12
TPM1-222ENST00000560131 CCDC82Q8N4S0 544 aa8.07□□□□□ -1.12
TPM1-222ENST00000560131 MDM2Q00987 491 aaPredicted RBP8.06□□□□□ -1.12
TPM1-222ENST00000560131 MTRQ99707 1265 aa8.06□□□□□ -1.12
TPM1-222ENST00000560131 C6orf132Q5T0Z8 1188 aa8.05□□□□□ -1.12
TPM1-222ENST00000560131 CDHR5Q9HBB8 845 aa8.05□□□□□ -1.12
TPM1-222ENST00000560131 POTECB2RU33 542 aa8.04□□□□□ -1.12
TPM1-222ENST00000560131 MAP3K7O43318 606 aa8.04□□□□□ -1.12
TPM1-222ENST00000560131 PHOX2BQ99453 314 aa8.04□□□□□ -1.12
TPM1-222ENST00000560131 BEGAINQ9BUH8 593 aa8.04□□□□□ -1.12
TPM1-222ENST00000560131 RAD21O60216 631 aa8.03□□□□□ -1.12
TPM1-222ENST00000560131 PKDCCQ504Y2 493 aa8.03□□□□□ -1.12
TPM1-222ENST00000560131 PROSER2Q86WR7 435 aaPredicted RBP8.03□□□□□ -1.12
TPM1-222ENST00000560131 PROCA1Q8NCQ7 364 aaPredicted RBP8.03□□□□□ -1.12
TPM1-222ENST00000560131 ZNF777Q9ULD5 760 aaPredicted RBP8.03□□□□□ -1.12
TPM1-222ENST00000560131 ATP1B4Q9UN42 357 aaPredicted RBP8.03□□□□□ -1.12
TPM1-222ENST00000560131 ZBTB7CA1YPR0 619 aa8.02□□□□□ -1.13
TPM1-222ENST00000560131 DGAT1O75907 488 aa8.02□□□□□ -1.13
TPM1-222ENST00000560131 OATP04181 439 aa8.02□□□□□ -1.13
TPM1-222ENST00000560131 GGCXP38435 758 aa8.02□□□□□ -1.13
TPM1-222ENST00000560131 LCE2AQ5TA79 106 aaPredicted RBP8.02□□□□□ -1.13
TPM1-222ENST00000560131 ZNF516Q92618 1163 aa8.02□□□□□ -1.13
TPM1-222ENST00000560131 FNBP4Q8N3X1 1017 aaPredicted RBP8.01□□□□□ -1.13
TPM1-222ENST00000560131 RBM33Q96EV2 1170 aaKnown RBP8.01□□□□□ -1.13
TPM1-222ENST00000560131 FAM217BQ9NTX9 383 aaPredicted RBP8.01□□□□□ -1.13
TPM1-222ENST00000560131 PACS2Q86VP3 889 aa8□□□□□ -1.13
TPM1-222ENST00000560131 POLR3EQ9NVU0 708 aa8□□□□□ -1.13
TPM1-222ENST00000560131 SERPINA10Q9UK55 444 aa8□□□□□ -1.13
TPM1-222ENST00000560131 TSR1Q2NL82 804 aaKnown RBP7.99□□□□□ -1.13
TPM1-222ENST00000560131 METTL3Q86U44 580 aaKnown RBP7.99□□□□□ -1.13
TPM1-222ENST00000560131 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.99□□□□□ -1.13
TPM1-222ENST00000560131 STK17AQ9UEE5 414 aa7.99□□□□□ -1.13
TPM1-222ENST00000560131 TTBK1Q5TCY1 1321 aaPredicted RBP7.99□□□□□ -1.13
TPM1-222ENST00000560131 SPDYE5A6NIY4 337 aa7.98□□□□□ -1.13
TPM1-222ENST00000560131 MYSM1Q5VVJ2 828 aa7.98□□□□□ -1.13
TPM1-222ENST00000560131 NPM2Q86SE8 214 aaKnown RBP7.98□□□□□ -1.13
TPM1-222ENST00000560131 BANK1Q8NDB2 785 aa7.98□□□□□ -1.13
TPM1-222ENST00000560131 CERKQ8TCT0 537 aa7.98□□□□□ -1.13
TPM1-222ENST00000560131 POM121Q96HA1 1249 aa7.98□□□□□ -1.13
TPM1-222ENST00000560131 DIXDC1Q155Q3 683 aa7.97□□□□□ -1.13
TPM1-222ENST00000560131 TRIM67Q6ZTA4 783 aa7.97□□□□□ -1.13
TPM1-222ENST00000560131 SAMD7Q7Z3H4 446 aa7.97□□□□□ -1.13
TPM1-222ENST00000560131 NKX2-3Q8TAU0 364 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms