RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 PIK3C2BO00750 1634 aa12.53□□□□□ -0.4
USP3-217ENST00000560070 ILDR1Q86SU0 546 aaPredicted RBP12.53□□□□□ -0.4
USP3-217ENST00000560070 E9PCH4 1651 aa12.53□□□□□ -0.4
USP3-217ENST00000560070 ARHGAP23Q9P227 1491 aa12.53□□□□□ -0.4
USP3-217ENST00000560070 STRCQ7RTU9 1775 aa12.52□□□□□ -0.41
USP3-217ENST00000560070 CCDC144AA2RUR9 1427 aa12.52□□□□□ -0.41
USP3-217ENST00000560070 VGFO15240 615 aaPredicted RBP12.51□□□□□ -0.41
USP3-217ENST00000560070 PROSER2Q86WR7 435 aaPredicted RBP12.51□□□□□ -0.41
USP3-217ENST00000560070 KDM2AQ9Y2K7 1162 aa12.51□□□□□ -0.41
USP3-217ENST00000560070 KCNA6P17658 529 aa12.5□□□□□ -0.41
USP3-217ENST00000560070 NEUROD1Q13562 356 aa12.5□□□□□ -0.41
USP3-217ENST00000560070 TBX22Q9Y458 520 aa12.5□□□□□ -0.41
USP3-217ENST00000560070 MED14O60244 1454 aa12.5□□□□□ -0.41
USP3-217ENST00000560070 ADGRB3O60242 1522 aa12.5□□□□□ -0.41
USP3-217ENST00000560070 SLIT1O75093 1534 aa12.5□□□□□ -0.41
USP3-217ENST00000560070 ZNF142P52746 1687 aaPredicted RBP12.5□□□□□ -0.41
USP3-217ENST00000560070 ZFYVE9O95405 1425 aa12.49□□□□□ -0.41
USP3-217ENST00000560070 PLEKHG1Q9ULL1 1385 aa12.49□□□□□ -0.41
USP3-217ENST00000560070 FBXO41Q8TF61 875 aa12.49□□□□□ -0.41
USP3-217ENST00000560070 ANKRD30BQ9BXX2 1392 aa12.48□□□□□ -0.41
USP3-217ENST00000560070 RPGRIP1LQ68CZ1 1315 aa12.48□□□□□ -0.41
USP3-217ENST00000560070 ADGRF5Q8IZF2 1346 aa12.48□□□□□ -0.41
USP3-217ENST00000560070 UBAP1LF5GYI3 381 aa12.48□□□□□ -0.41
USP3-217ENST00000560070 NEURL4Q96JN8 1562 aa12.47□□□□□ -0.41
USP3-217ENST00000560070 SCAF1Q9H7N4 1312 aaKnown RBP12.47□□□□□ -0.41
USP3-217ENST00000560070 DCAF11Q8TEB1 546 aa12.47□□□□□ -0.41
USP3-217ENST00000560070 SIN3AQ96ST3 1273 aa12.47□□□□□ -0.41
USP3-217ENST00000560070 AMOTL2Q9Y2J4 779 aa12.47□□□□□ -0.41
USP3-217ENST00000560070 UBR1Q8IWV7 1749 aa12.47□□□□□ -0.41
USP3-217ENST00000560070 PIP4K2BP78356 416 aa12.46□□□□□ -0.41
USP3-217ENST00000560070 TRPM2O94759 1503 aa12.46□□□□□ -0.42
USP3-217ENST00000560070 TMEM131LA2VDJ0 1609 aa12.45□□□□□ -0.42
USP3-217ENST00000560070 CLTCL1P53675 1640 aa12.44□□□□□ -0.42
USP3-217ENST00000560070 C14orf37Q86TY3 774 aa12.44□□□□□ -0.42
USP3-217ENST00000560070 STK26Q9P289 416 aa12.44□□□□□ -0.42
USP3-217ENST00000560070 TMEM132EQ6IEE7 984 aa12.43□□□□□ -0.42
USP3-217ENST00000560070 LTBP4Q8N2S1 1624 aa12.43□□□□□ -0.42
USP3-217ENST00000560070 CFAP70Q5T0N1 1121 aa12.42□□□□□ -0.42
USP3-217ENST00000560070 ADAMTS13Q76LX8 1427 aa12.42□□□□□ -0.42
USP3-217ENST00000560070 METP08581 1390 aa12.42□□□□□ -0.42
USP3-217ENST00000560070 TOM1O60784 492 aa12.41□□□□□ -0.42
USP3-217ENST00000560070 SPATA31E1Q6ZUB1 1445 aa12.41□□□□□ -0.42
USP3-217ENST00000560070 TMEM94Q12767 1356 aa12.41□□□□□ -0.42
USP3-217ENST00000560070 DHX57Q6P158 1386 aaKnown RBP12.4□□□□□ -0.42
USP3-217ENST00000560070 SPHKAPQ2M3C7 1700 aa12.4□□□□□ -0.43
USP3-217ENST00000560070 IQGAP1P46940 1657 aa12.38□□□□□ -0.43
USP3-217ENST00000560070 PTPRUQ92729 1446 aa12.38□□□□□ -0.43
USP3-217ENST00000560070 LRRC7Q96NW7 1537 aa12.38□□□□□ -0.43
USP3-217ENST00000560070 L3MBTL2Q969R5 705 aa12.37□□□□□ -0.43
USP3-217ENST00000560070 C14orf93Q9H972 538 aaKnown RBP12.37□□□□□ -0.43
USP3-217ENST00000560070 NEXMIFQ5QGS0 1516 aa12.37□□□□□ -0.43
USP3-217ENST00000560070 WAPLQ7Z5K2 1190 aa12.36□□□□□ -0.43
USP3-217ENST00000560070 CPS1P31327 1500 aa12.36□□□□□ -0.43
USP3-217ENST00000560070 POLR1AO95602 1720 aaPredicted RBP12.35□□□□□ -0.43
USP3-217ENST00000560070 KDM5AP29375 1690 aaKnown RBP12.35□□□□□ -0.43
USP3-217ENST00000560070 PIK3R4Q99570 1358 aa12.34□□□□□ -0.43
USP3-217ENST00000560070 ATF3P18847 181 aa12.34□□□□□ -0.43
USP3-217ENST00000560070 SAFB2Q14151 953 aaKnown RBP eCLIP12.34□□□□□ -0.43
USP3-217ENST00000560070 C19orf44Q9H6X5 657 aa12.34□□□□□ -0.43
USP3-217ENST00000560070 SLAIN2Q9P270 581 aa12.33□□□□□ -0.44
USP3-217ENST00000560070 TRAK1Q9UPV9 953 aa12.33□□□□□ -0.44
USP3-217ENST00000560070 MSH6P52701 1360 aa12.32□□□□□ -0.44
USP3-217ENST00000560070 CCER1Q8TC90 406 aaPredicted RBP12.32□□□□□ -0.44
USP3-217ENST00000560070 ROBO2Q9HCK4 1378 aa12.31□□□□□ -0.44
USP3-217ENST00000560070 NUTM2FA1L443 756 aa12.31□□□□□ -0.44
USP3-217ENST00000560070 HSPA1LP34931 641 aa12.31□□□□□ -0.44
USP3-217ENST00000560070 NBPF1Q3BBV0 1214 aa12.31□□□□□ -0.44
USP3-217ENST00000560070 STAC3Q96MF2 364 aa12.31□□□□□ -0.44
USP3-217ENST00000560070 POGKQ9P215 609 aa12.31□□□□□ -0.44
USP3-217ENST00000560070 MYO5BQ9ULV0 1848 aa12.31□□□□□ -0.44
USP3-217ENST00000560070 ALKQ9UM73 1620 aa12.29□□□□□ -0.44
USP3-217ENST00000560070 CADPS2Q86UW7 1296 aa12.29□□□□□ -0.44
USP3-217ENST00000560070 PRAM1Q96QH2 718 aa12.29□□□□□ -0.44
USP3-217ENST00000560070 SETBP1Q9Y6X0 1596 aa12.29□□□□□ -0.44
USP3-217ENST00000560070 LRPPRCP42704 1394 aaKnown RBP12.29□□□□□ -0.44
USP3-217ENST00000560070 IQSEC2Q5JU85 1478 aa12.28□□□□□ -0.44
USP3-217ENST00000560070 PIK3C2GO75747 1445 aa12.28□□□□□ -0.44
USP3-217ENST00000560070 KIF1BO60333 1816 aa12.27□□□□□ -0.44
USP3-217ENST00000560070 ABCC11Q96J66 1382 aa12.27□□□□□ -0.45
USP3-217ENST00000560070 PLEKHH1Q9ULM0 1364 aa12.27□□□□□ -0.45
USP3-217ENST00000560070 STRCP1A6NGW2 1772 aa12.26□□□□□ -0.45
USP3-217ENST00000560070 NBPF8Q3BBV2 869 aa12.26□□□□□ -0.45
USP3-217ENST00000560070 HIRIP3Q9BW71 556 aaPredicted RBP12.26□□□□□ -0.45
USP3-217ENST00000560070 TONSLQ96HA7 1378 aa12.26□□□□□ -0.45
USP3-217ENST00000560070 YTHDC2Q9H6S0 1430 aaKnown RBP12.26□□□□□ -0.45
USP3-217ENST00000560070 NKTRP30414 1462 aaKnown RBP12.26□□□□□ -0.45
USP3-217ENST00000560070 DIP2AQ14689 1571 aa12.26□□□□□ -0.45
USP3-217ENST00000560070 MINK1Q8N4C8 1332 aaPredicted RBP12.25□□□□□ -0.45
USP3-217ENST00000560070 NRXN3Q9Y4C0 1643 aa12.25□□□□□ -0.45
USP3-217ENST00000560070 MYOM2P54296 1465 aa12.24□□□□□ -0.45
USP3-217ENST00000560070 DDX17Q92841 729 aaKnown RBP12.24□□□□□ -0.45
USP3-217ENST00000560070 SIRT1Q96EB6 747 aa12.24□□□□□ -0.45
USP3-217ENST00000560070 ORAI2Q96SN7 254 aa12.24□□□□□ -0.45
USP3-217ENST00000560070 RNF39Q9H2S5 420 aa12.24□□□□□ -0.45
USP3-217ENST00000560070 NCOA3Q9Y6Q9 1424 aa12.24□□□□□ -0.45
USP3-217ENST00000560070 NRXN1Q9ULB1 1477 aa12.23□□□□□ -0.45
USP3-217ENST00000560070 BRINP3Q76B58 766 aa12.23□□□□□ -0.45
USP3-217ENST00000560070 ESCO1Q5FWF5 840 aa12.22□□□□□ -0.45
USP3-217ENST00000560070 NWD1Q149M9 1564 aa12.22□□□□□ -0.45
USP3-217ENST00000560070 FAM135BQ49AJ0 1406 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms