RNA–Protein interactions for RNA: ENST00000560005.6

PSEN1-225, Transcript of presenilin 1, human

TSL 3

Gene PSEN1, Length 699 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSEN1-225	ENST00000560005	CHIC2	Q9UKJ5	165 aa		31.79	■■■□□ 2.68
PSEN1-225	ENST00000560005	ANKRD30A	Q9BXX3	1397 aa		31.78	■■■□□ 2.68
PSEN1-225	ENST00000560005	JCAD	Q9P266	1359 aa		31.77	■■■□□ 2.68
PSEN1-225	ENST00000560005	SLC52A1	Q9NWF4	448 aa		31.75	■■■□□ 2.67
PSEN1-225	ENST00000560005	FGD6	Q6ZV73	1430 aa		31.73	■■■□□ 2.67
PSEN1-225	ENST00000560005	PLEKHG1	Q9ULL1	1385 aa		31.68	■■■□□ 2.66
PSEN1-225	ENST00000560005	COL16A1	Q07092	1604 aa	Predicted RBP	31.68	■■■□□ 2.66
PSEN1-225	ENST00000560005	ZFYVE9	O95405	1425 aa		31.68	■■■□□ 2.66
PSEN1-225	ENST00000560005	CHD2	O14647	1828 aa	Known RBP	31.68	■■■□□ 2.66
PSEN1-225	ENST00000560005	PPP1R15A	O75807	674 aa	Predicted RBP	31.66	■■■□□ 2.66
PSEN1-225	ENST00000560005	APLP2	Q06481	763 aa		31.65	■■■□□ 2.66
PSEN1-225	ENST00000560005	MYO5B	Q9ULV0	1848 aa		31.65	■■■□□ 2.66
PSEN1-225	ENST00000560005	RIMS2	Q9UQ26	1411 aa		31.64	■■■□□ 2.66
PSEN1-225	ENST00000560005	RPRD2	Q5VT52	1461 aa	Known RBP	31.64	■■■□□ 2.66
PSEN1-225	ENST00000560005	LRP6	O75581	1613 aa		31.64	■■■□□ 2.65
PSEN1-225	ENST00000560005	GCC2	Q8IWJ2	1684 aa		31.61	■■■□□ 2.65
PSEN1-225	ENST00000560005	C14orf37	Q86TY3	774 aa		31.6	■■■□□ 2.65
PSEN1-225	ENST00000560005	ADGRL2	O95490	1459 aa		31.59	■■■□□ 2.65
PSEN1-225	ENST00000560005	SPATA31A6	Q5VVP1	1343 aa		31.59	■■■□□ 2.65
PSEN1-225	ENST00000560005	HDGF	P51858	240 aa	Known RBP	31.59	■■■□□ 2.65
PSEN1-225	ENST00000560005	MEX3C	Q5U5Q3	659 aa	Known RBP	31.59	■■■□□ 2.65
PSEN1-225	ENST00000560005	TMEM131L	A2VDJ0	1609 aa		31.58	■■■□□ 2.65
PSEN1-225	ENST00000560005	TBX22	Q9Y458	520 aa		31.58	■■■□□ 2.65
PSEN1-225	ENST00000560005	NCOA3	Q9Y6Q9	1424 aa		31.58	■■■□□ 2.65
PSEN1-225	ENST00000560005	ZNF772	Q68DY9	489 aa	Predicted RBP	31.55	■■■□□ 2.64
PSEN1-225	ENST00000560005	TRIM52	Q96A61	297 aa		31.55	■■■□□ 2.64
PSEN1-225	ENST00000560005	ANKRD50	Q9ULJ7	1429 aa		31.55	■■■□□ 2.64
PSEN1-225	ENST00000560005	UPF1	Q92900	1129 aa	Known RBP eCLIP	31.54	■■■□□ 2.64
PSEN1-225	ENST00000560005	AHDC1	Q5TGY3	1603 aa	Predicted RBP	31.53	■■■□□ 2.64
PSEN1-225	ENST00000560005	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	31.52	■■■□□ 2.64
PSEN1-225	ENST00000560005	CHGA	P10645	457 aa	Known RBP	31.52	■■■□□ 2.64
PSEN1-225	ENST00000560005	CADPS2	Q86UW7	1296 aa		31.52	■■■□□ 2.64
PSEN1-225	ENST00000560005	ADAMTS13	Q76LX8	1427 aa		31.51	■■■□□ 2.64
PSEN1-225	ENST00000560005	NUTM2D	Q5VT03	806 aa	Predicted RBP	31.51	■■■□□ 2.63
PSEN1-225	ENST00000560005	ATF3	P18847	181 aa		31.5	■■■□□ 2.63
PSEN1-225	ENST00000560005	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	31.5	■■■□□ 2.63
PSEN1-225	ENST00000560005	C19orf44	Q9H6X5	657 aa		31.5	■■■□□ 2.63
PSEN1-225	ENST00000560005	SHPRH	Q149N8	1683 aa		31.5	■■■□□ 2.63
PSEN1-225	ENST00000560005	FAM50A	Q14320	339 aa	Known RBP	31.47	■■■□□ 2.63
PSEN1-225	ENST00000560005	DIP2A	Q14689	1571 aa		31.46	■■■□□ 2.63
PSEN1-225	ENST00000560005	PIK3R4	Q99570	1358 aa		31.44	■■■□□ 2.62
PSEN1-225	ENST00000560005	RXRB	P28702	533 aa		31.42	■■■□□ 2.62
PSEN1-225	ENST00000560005	NUTM2B	A6NNL0	878 aa	Predicted RBP	31.41	■■■□□ 2.62
PSEN1-225	ENST00000560005	NUTM2E	B1AL46	878 aa	Predicted RBP	31.41	■■■□□ 2.62
PSEN1-225	ENST00000560005	BRINP3	Q76B58	766 aa		31.41	■■■□□ 2.62
PSEN1-225	ENST00000560005	NUTM2A	Q8IVF1	878 aa	Predicted RBP	31.41	■■■□□ 2.62
PSEN1-225	ENST00000560005	UNC13B	O14795	1591 aa		31.39	■■■□□ 2.62
PSEN1-225	ENST00000560005		E9PCH4	1651 aa		31.39	■■■□□ 2.62
PSEN1-225	ENST00000560005	AMOTL2	Q9Y2J4	779 aa		31.39	■■■□□ 2.62
PSEN1-225	ENST00000560005	TRPM2	O94759	1503 aa		31.38	■■■□□ 2.61
PSEN1-225	ENST00000560005	PTPRU	Q92729	1446 aa		31.37	■■■□□ 2.61
PSEN1-225	ENST00000560005	CDK12	Q9NYV4	1490 aa	Predicted RBP	31.33	■■■□□ 2.61
PSEN1-225	ENST00000560005	AFF2	P51816	1311 aa		31.33	■■■□□ 2.61
PSEN1-225	ENST00000560005	ASXL1	Q8IXJ9	1541 aa		31.33	■■■□□ 2.61
PSEN1-225	ENST00000560005	DCC	P43146	1447 aa		31.32	■■■□□ 2.6
PSEN1-225	ENST00000560005	SETD5	Q9C0A6	1442 aa		31.29	■■■□□ 2.6
PSEN1-225	ENST00000560005	IQGAP3	Q86VI3	1631 aa		31.27	■■■□□ 2.6
PSEN1-225	ENST00000560005	MST1R	Q04912	1400 aa		31.26	■■■□□ 2.6
PSEN1-225	ENST00000560005	XRN1	Q8IZH2	1706 aa	Known RBP	31.26	■■■□□ 2.59
PSEN1-225	ENST00000560005	NHSL1	Q5SYE7	1610 aa		31.25	■■■□□ 2.59
PSEN1-225	ENST00000560005	NRXN3	Q9Y4C0	1643 aa		31.24	■■■□□ 2.59
PSEN1-225	ENST00000560005	SRCAP	Q6ZRS2	3230 aa		31.22	■■■□□ 2.59
PSEN1-225	ENST00000560005	LRRC59	Q96AG4	307 aa	Known RBP	31.22	■■■□□ 2.59
PSEN1-225	ENST00000560005	C8orf37	Q96NL8	207 aa		31.22	■■■□□ 2.59
PSEN1-225	ENST00000560005	RGS12	O14924	1447 aa		31.21	■■■□□ 2.59
PSEN1-225	ENST00000560005	NUP155	O75694	1391 aa		31.2	■■■□□ 2.59
PSEN1-225	ENST00000560005	SETBP1	Q9Y6X0	1596 aa		31.2	■■■□□ 2.58
PSEN1-225	ENST00000560005	DDX17	Q92841	729 aa	Known RBP	31.19	■■■□□ 2.58
PSEN1-225	ENST00000560005	ROCK1	Q13464	1354 aa		31.18	■■■□□ 2.58
PSEN1-225	ENST00000560005	QTRT2	Q9H974	415 aa	Known RBP	31.18	■■■□□ 2.58
PSEN1-225	ENST00000560005	PNPLA6	Q8IY17	1366 aa		31.17	■■■□□ 2.58
PSEN1-225	ENST00000560005	RBM6	P78332	1123 aa	Known RBP	31.17	■■■□□ 2.58
PSEN1-225	ENST00000560005	MET	P08581	1390 aa		31.17	■■■□□ 2.58
PSEN1-225	ENST00000560005	ADGRL3	Q9HAR2	1447 aa		31.14	■■■□□ 2.58
PSEN1-225	ENST00000560005	ZNF326	Q5BKZ1	582 aa	Known RBP	31.13	■■■□□ 2.57
PSEN1-225	ENST00000560005	NALCN	Q8IZF0	1738 aa		31.1	■■■□□ 2.57
PSEN1-225	ENST00000560005	ADAMTS2	O95450	1211 aa		31.09	■■■□□ 2.57
PSEN1-225	ENST00000560005	SPHKAP	Q2M3C7	1700 aa		31.08	■■■□□ 2.57
PSEN1-225	ENST00000560005	NGLY1	Q96IV0	654 aa		31.08	■■■□□ 2.57
PSEN1-225	ENST00000560005	C1orf167	Q5SNV9	1468 aa		31.03	■■■□□ 2.56
PSEN1-225	ENST00000560005	ITGAE	P38570	1179 aa		31.03	■■■□□ 2.56
PSEN1-225	ENST00000560005	NEXMIF	Q5QGS0	1516 aa		31	■■■□□ 2.55
PSEN1-225	ENST00000560005	ATAD2	Q6PL18	1390 aa		31	■■■□□ 2.55
PSEN1-225	ENST00000560005	USP21	Q9UK80	565 aa		30.97	■■■□□ 2.55
PSEN1-225	ENST00000560005	LAMC1	P11047	1609 aa		30.97	■■■□□ 2.55
PSEN1-225	ENST00000560005	SOS2	Q07890	1332 aa	Predicted RBP	30.96	■■■□□ 2.55
PSEN1-225	ENST00000560005	CLTCL1	P53675	1640 aa		30.95	■■■□□ 2.55
PSEN1-225	ENST00000560005	ORAI2	Q96SN7	254 aa		30.95	■■■□□ 2.55
PSEN1-225	ENST00000560005	TRPC5	Q9UL62	973 aa	Predicted RBP	30.94	■■■□□ 2.54
PSEN1-225	ENST00000560005	PTCH1	Q13635	1447 aa		30.92	■■■□□ 2.54
PSEN1-225	ENST00000560005	EP400	Q96L91	3159 aa		30.91	■■■□□ 2.54
PSEN1-225	ENST00000560005	ROBO2	Q9HCK4	1378 aa		30.91	■■■□□ 2.54
PSEN1-225	ENST00000560005	FNBP4	Q8N3X1	1017 aa	Predicted RBP	30.9	■■■□□ 2.54
PSEN1-225	ENST00000560005	TRIM26	Q12899	539 aa	Predicted RBP	30.88	■■■□□ 2.53
PSEN1-225	ENST00000560005	ATRN	O75882	1429 aa		30.87	■■■□□ 2.53
PSEN1-225	ENST00000560005	KIF1B	O60333	1816 aa		30.86	■■■□□ 2.53
PSEN1-225	ENST00000560005	ZRANB1	Q9UGI0	708 aa		30.85	■■■□□ 2.53
PSEN1-225	ENST00000560005	COL22A1	Q8NFW1	1626 aa	Predicted RBP	30.84	■■■□□ 2.53
PSEN1-225	ENST00000560005	FOXD1	Q16676	465 aa		30.82	■■■□□ 2.52
PSEN1-225	ENST00000560005	VGF	O15240	615 aa	Predicted RBP	30.8	■■■□□ 2.52

Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms