RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 RBM33Q96EV2 1170 aaKnown RBP14.09□□□□□ -0.15
HDDC3-204ENST00000559834 TET3O43151 1660 aa14.09□□□□□ -0.15
HDDC3-204ENST00000559834 TBX22Q9Y458 520 aa14.08□□□□□ -0.16
HDDC3-204ENST00000559834 MSH6P52701 1360 aa14.08□□□□□ -0.16
HDDC3-204ENST00000559834 ADGRB3O60242 1522 aa14.07□□□□□ -0.16
HDDC3-204ENST00000559834 SLAIN2Q9P270 581 aa14.07□□□□□ -0.16
HDDC3-204ENST00000559834 PLEKHG1Q9ULL1 1385 aa14.07□□□□□ -0.16
HDDC3-204ENST00000559834 RIMS2Q9UQ26 1411 aa14.06□□□□□ -0.16
HDDC3-204ENST00000559834 RGS17Q9UGC6 210 aaPredicted RBP14.05□□□□□ -0.16
HDDC3-204ENST00000559834 XIRP1Q702N8 1843 aaKnown RBP14.05□□□□□ -0.16
HDDC3-204ENST00000559834 NKTRP30414 1462 aaKnown RBP14.05□□□□□ -0.16
HDDC3-204ENST00000559834 C14orf37Q86TY3 774 aa14.04□□□□□ -0.16
HDDC3-204ENST00000559834 ROCK1Q13464 1354 aa14.04□□□□□ -0.16
HDDC3-204ENST00000559834 ZFYVE9O95405 1425 aa14.03□□□□□ -0.16
HDDC3-204ENST00000559834 NCOA3Q9Y6Q9 1424 aa14.02□□□□□ -0.16
HDDC3-204ENST00000559834 NUP155O75694 1391 aa14.01□□□□□ -0.17
HDDC3-204ENST00000559834 ITGAEP38570 1179 aa14.01□□□□□ -0.17
HDDC3-204ENST00000559834 NUTM2DQ5VT03 806 aaPredicted RBP14.01□□□□□ -0.17
HDDC3-204ENST00000559834 CADPS2Q86UW7 1296 aa14□□□□□ -0.17
HDDC3-204ENST00000559834 C19orf44Q9H6X5 657 aa14□□□□□ -0.17
HDDC3-204ENST00000559834 NWD1Q149M9 1564 aa14□□□□□ -0.17
HDDC3-204ENST00000559834 PIK3R4Q99570 1358 aa13.99□□□□□ -0.17
HDDC3-204ENST00000559834 ATF3P18847 181 aa13.99□□□□□ -0.17
HDDC3-204ENST00000559834 TMEM131LA2VDJ0 1609 aa13.98□□□□□ -0.17
HDDC3-204ENST00000559834 ROBO1Q9Y6N7 1651 aa13.98□□□□□ -0.17
HDDC3-204ENST00000559834 JCADQ9P266 1359 aa13.97□□□□□ -0.17
HDDC3-204ENST00000559834 POTEAQ6S8J7 498 aa13.97□□□□□ -0.17
HDDC3-204ENST00000559834 AMOTL2Q9Y2J4 779 aa13.97□□□□□ -0.17
HDDC3-204ENST00000559834 GCC2Q8IWJ2 1684 aa13.97□□□□□ -0.17
HDDC3-204ENST00000559834 UNC13BO14795 1591 aa13.96□□□□□ -0.17
HDDC3-204ENST00000559834 CHD2O14647 1828 aaKnown RBP13.96□□□□□ -0.17
HDDC3-204ENST00000559834 ZNF326Q5BKZ1 582 aaKnown RBP13.95□□□□□ -0.18
HDDC3-204ENST00000559834 ADAMTS13Q76LX8 1427 aa13.95□□□□□ -0.18
HDDC3-204ENST00000559834 PPARGC1BQ86YN6 1023 aaKnown RBP13.94□□□□□ -0.18
HDDC3-204ENST00000559834 MYO5BQ9ULV0 1848 aa13.94□□□□□ -0.18
HDDC3-204ENST00000559834 SPATA31A6Q5VVP1 1343 aa13.93□□□□□ -0.18
HDDC3-204ENST00000559834 E9PCH4 1651 aa13.93□□□□□ -0.18
HDDC3-204ENST00000559834 IQGAP3Q86VI3 1631 aa13.93□□□□□ -0.18
HDDC3-204ENST00000559834 MEX3CQ5U5Q3 659 aaKnown RBP13.92□□□□□ -0.18
HDDC3-204ENST00000559834 DIP2AQ14689 1571 aa13.92□□□□□ -0.18
HDDC3-204ENST00000559834 PHLPP1O60346 1717 aa13.9□□□□□ -0.18
HDDC3-204ENST00000559834 ZNF772Q68DY9 489 aaPredicted RBP13.9□□□□□ -0.18
HDDC3-204ENST00000559834 TRPM2O94759 1503 aa13.9□□□□□ -0.19
HDDC3-204ENST00000559834 BRINP3Q76B58 766 aa13.88□□□□□ -0.19
HDDC3-204ENST00000559834 PTPRUQ92729 1446 aa13.87□□□□□ -0.19
HDDC3-204ENST00000559834 DCCP43146 1447 aa13.86□□□□□ -0.19
HDDC3-204ENST00000559834 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.86□□□□□ -0.19
HDDC3-204ENST00000559834 VGFO15240 615 aaPredicted RBP13.85□□□□□ -0.19
HDDC3-204ENST00000559834 TRIM52Q96A61 297 aa13.85□□□□□ -0.19
HDDC3-204ENST00000559834 LRRC59Q96AG4 307 aaKnown RBP13.85□□□□□ -0.19
HDDC3-204ENST00000559834 METP08581 1390 aa13.84□□□□□ -0.19
HDDC3-204ENST00000559834 COL16A1Q07092 1604 aaPredicted RBP13.84□□□□□ -0.19
HDDC3-204ENST00000559834 NUTM2BA6NNL0 878 aaPredicted RBP13.84□□□□□ -0.19
HDDC3-204ENST00000559834 NUTM2EB1AL46 878 aaPredicted RBP13.84□□□□□ -0.19
HDDC3-204ENST00000559834 NUTM2AQ8IVF1 878 aaPredicted RBP13.84□□□□□ -0.19
HDDC3-204ENST00000559834 AHDC1Q5TGY3 1603 aaPredicted RBP13.83□□□□□ -0.2
HDDC3-204ENST00000559834 RXRBP28702 533 aa13.83□□□□□ -0.2
HDDC3-204ENST00000559834 SETBP1Q9Y6X0 1596 aa13.83□□□□□ -0.2
HDDC3-204ENST00000559834 RPGRIP1LQ68CZ1 1315 aa13.81□□□□□ -0.2
HDDC3-204ENST00000559834 SPHKAPQ2M3C7 1700 aa13.81□□□□□ -0.2
HDDC3-204ENST00000559834 SLC4A1APQ9BWU0 796 aaKnown RBP13.8□□□□□ -0.2
HDDC3-204ENST00000559834 SETD5Q9C0A6 1442 aa13.8□□□□□ -0.2
HDDC3-204ENST00000559834 RRBP1Q9P2E9 1410 aaKnown RBP13.8□□□□□ -0.2
HDDC3-204ENST00000559834 LRP6O75581 1613 aa13.79□□□□□ -0.2
HDDC3-204ENST00000559834 MST1RQ04912 1400 aa13.79□□□□□ -0.2
HDDC3-204ENST00000559834 NAIPQ13075 1403 aa13.79□□□□□ -0.2
HDDC3-204ENST00000559834 ADGRL3Q9HAR2 1447 aa13.78□□□□□ -0.2
HDDC3-204ENST00000559834 ASXL1Q8IXJ9 1541 aa13.78□□□□□ -0.2
HDDC3-204ENST00000559834 NRXN3Q9Y4C0 1643 aa13.78□□□□□ -0.2
HDDC3-204ENST00000559834 SHPRHQ149N8 1683 aa13.77□□□□□ -0.21
HDDC3-204ENST00000559834 XRN1Q8IZH2 1706 aaKnown RBP13.77□□□□□ -0.21
HDDC3-204ENST00000559834 NEXMIFQ5QGS0 1516 aa13.76□□□□□ -0.21
HDDC3-204ENST00000559834 AFF2P51816 1311 aa13.76□□□□□ -0.21
HDDC3-204ENST00000559834 UPF1Q92900 1129 aaKnown RBP eCLIP13.76□□□□□ -0.21
HDDC3-204ENST00000559834 DDX17Q92841 729 aaKnown RBP13.75□□□□□ -0.21
HDDC3-204ENST00000559834 C8orf37Q96NL8 207 aa13.75□□□□□ -0.21
HDDC3-204ENST00000559834 QTRT2Q9H974 415 aaKnown RBP13.75□□□□□ -0.21
HDDC3-204ENST00000559834 CLTCL1P53675 1640 aa13.75□□□□□ -0.21
HDDC3-204ENST00000559834 KIF1BO60333 1816 aa13.74□□□□□ -0.21
HDDC3-204ENST00000559834 NGLY1Q96IV0 654 aa13.74□□□□□ -0.21
HDDC3-204ENST00000559834 HFM1A2PYH4 1435 aa13.73□□□□□ -0.21
HDDC3-204ENST00000559834 RBM6P78332 1123 aaKnown RBP13.73□□□□□ -0.21
HDDC3-204ENST00000559834 ORAI2Q96SN7 254 aa13.73□□□□□ -0.21
HDDC3-204ENST00000559834 C1orf167Q5SNV9 1468 aa13.73□□□□□ -0.21
HDDC3-204ENST00000559834 PNPLA6Q8IY17 1366 aa13.72□□□□□ -0.21
HDDC3-204ENST00000559834 PTCH1Q13635 1447 aa13.72□□□□□ -0.21
HDDC3-204ENST00000559834 ROBO2Q9HCK4 1378 aa13.71□□□□□ -0.21
HDDC3-204ENST00000559834 SOS2Q07890 1332 aaPredicted RBP13.71□□□□□ -0.21
HDDC3-204ENST00000559834 ADAMTS2O95450 1211 aa13.71□□□□□ -0.21
HDDC3-204ENST00000559834 CDK12Q9NYV4 1490 aaPredicted RBP13.71□□□□□ -0.21
HDDC3-204ENST00000559834 NHSL1Q5SYE7 1610 aa13.7□□□□□ -0.22
HDDC3-204ENST00000559834 RGL3Q3MIN7 710 aa13.69□□□□□ -0.22
HDDC3-204ENST00000559834 ESCO1Q5FWF5 840 aa13.69□□□□□ -0.22
HDDC3-204ENST00000559834 SETD1AO15047 1707 aaKnown RBP13.69□□□□□ -0.22
HDDC3-204ENST00000559834 ACIN1Q9UKV3 1341 aaKnown RBP13.68□□□□□ -0.22
HDDC3-204ENST00000559834 FOXD1Q16676 465 aa13.68□□□□□ -0.22
HDDC3-204ENST00000559834 NPHP3Q7Z494 1330 aa13.67□□□□□ -0.22
HDDC3-204ENST00000559834 PRAG1Q86YV5 1406 aa13.67□□□□□ -0.22
HDDC3-204ENST00000559834 MPHOSPH9Q99550 1183 aa13.67□□□□□ -0.22
HDDC3-204ENST00000559834 USP21Q9UK80 565 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 176.9 ms