RNA–Protein interactions for RNA: ENST00000559774.6

LRRC28-215, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 624 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-215ENST00000559774 UBR1Q8IWV7 1749 aa12.57□□□□□ -0.4
LRRC28-215ENST00000559774 ZNF326Q5BKZ1 582 aaKnown RBP12.56□□□□□ -0.4
LRRC28-215ENST00000559774 SIN3AQ96ST3 1273 aa12.56□□□□□ -0.4
LRRC28-215ENST00000559774 KIF1BO60333 1816 aa12.55□□□□□ -0.4
LRRC28-215ENST00000559774 RIMS2Q9UQ26 1411 aa12.55□□□□□ -0.4
LRRC28-215ENST00000559774 NEUROD1Q13562 356 aa12.54□□□□□ -0.4
LRRC28-215ENST00000559774 RGL3Q3MIN7 710 aa12.54□□□□□ -0.4
LRRC28-215ENST00000559774 TXNDC2Q86VQ3 553 aa12.54□□□□□ -0.4
LRRC28-215ENST00000559774 DMRT2Q9Y5R5 561 aa12.54□□□□□ -0.4
LRRC28-215ENST00000559774 MED14O60244 1454 aa12.53□□□□□ -0.4
LRRC28-215ENST00000559774 TONSLQ96HA7 1378 aa12.53□□□□□ -0.4
LRRC28-215ENST00000559774 SCAF11Q99590 1463 aaKnown RBP12.53□□□□□ -0.4
LRRC28-215ENST00000559774 LTKP29376 864 aa12.52□□□□□ -0.41
LRRC28-215ENST00000559774 PLEKHG1Q9ULL1 1385 aa12.52□□□□□ -0.41
LRRC28-215ENST00000559774 MYOM2P54296 1465 aa12.52□□□□□ -0.41
LRRC28-215ENST00000559774 NEXMIFQ5QGS0 1516 aa12.52□□□□□ -0.41
LRRC28-215ENST00000559774 PPP1R15AO75807 674 aaPredicted RBP12.51□□□□□ -0.41
LRRC28-215ENST00000559774 HSPA2P54652 639 aa12.51□□□□□ -0.41
LRRC28-215ENST00000559774 DCAF11Q8TEB1 546 aa12.51□□□□□ -0.41
LRRC28-215ENST00000559774 L3MBTL2Q969R5 705 aa12.51□□□□□ -0.41
LRRC28-215ENST00000559774 NRXN1Q9ULB1 1477 aa12.5□□□□□ -0.41
LRRC28-215ENST00000559774 NPHP4O75161 1426 aaPredicted RBP12.48□□□□□ -0.41
LRRC28-215ENST00000559774 TBX22Q9Y458 520 aa12.48□□□□□ -0.41
LRRC28-215ENST00000559774 NCKAP5LQ9HCH0 1330 aa12.47□□□□□ -0.41
LRRC28-215ENST00000559774 PIK3C2GO75747 1445 aa12.46□□□□□ -0.41
LRRC28-215ENST00000559774 ADGRF5Q8IZF2 1346 aa12.46□□□□□ -0.41
LRRC28-215ENST00000559774 C14orf93Q9H972 538 aaKnown RBP12.46□□□□□ -0.41
LRRC28-215ENST00000559774 KDM2AQ9Y2K7 1162 aa12.46□□□□□ -0.41
LRRC28-215ENST00000559774 SETBP1Q9Y6X0 1596 aa12.46□□□□□ -0.42
LRRC28-215ENST00000559774 PPLO60437 1756 aa12.46□□□□□ -0.42
LRRC28-215ENST00000559774 IFT172Q9UG01 1749 aa12.45□□□□□ -0.42
LRRC28-215ENST00000559774 PIK3R4Q99570 1358 aa12.45□□□□□ -0.42
LRRC28-215ENST00000559774 MYO5BQ9ULV0 1848 aa12.45□□□□□ -0.42
LRRC28-215ENST00000559774 PRAG1Q86YV5 1406 aa12.45□□□□□ -0.42
LRRC28-215ENST00000559774 DIP2AQ14689 1571 aa12.44□□□□□ -0.42
LRRC28-215ENST00000559774 ZEB1P37275 1124 aaPredicted RBP12.44□□□□□ -0.42
LRRC28-215ENST00000559774 NUTM2DQ5VT03 806 aaPredicted RBP12.44□□□□□ -0.42
LRRC28-215ENST00000559774 BCANQ96GW7 911 aa12.43□□□□□ -0.42
LRRC28-215ENST00000559774 ADAMTS13Q76LX8 1427 aa12.43□□□□□ -0.42
LRRC28-215ENST00000559774 POLR1AO95602 1720 aaPredicted RBP12.42□□□□□ -0.42
LRRC28-215ENST00000559774 STRCQ7RTU9 1775 aa12.42□□□□□ -0.42
LRRC28-215ENST00000559774 IQGAP1P46940 1657 aa12.41□□□□□ -0.42
LRRC28-215ENST00000559774 SLC26A8Q96RN1 970 aa12.4□□□□□ -0.42
LRRC28-215ENST00000559774 LAMC1P11047 1609 aa12.4□□□□□ -0.42
LRRC28-215ENST00000559774 CFAP70Q5T0N1 1121 aa12.39□□□□□ -0.43
LRRC28-215ENST00000559774 ALKQ9UM73 1620 aa12.39□□□□□ -0.43
LRRC28-215ENST00000559774 NRXN3Q9Y4C0 1643 aa12.38□□□□□ -0.43
LRRC28-215ENST00000559774 KCNA6P17658 529 aa12.38□□□□□ -0.43
LRRC28-215ENST00000559774 NBPF8Q3BBV2 869 aa12.38□□□□□ -0.43
LRRC28-215ENST00000559774 SIRT1Q96EB6 747 aa12.38□□□□□ -0.43
LRRC28-215ENST00000559774 GPRASP1Q5JY77 1395 aa12.38□□□□□ -0.43
LRRC28-215ENST00000559774 KIAA1210Q9ULL0 1709 aa12.37□□□□□ -0.43
LRRC28-215ENST00000559774 ABCC11Q96J66 1382 aa12.37□□□□□ -0.43
LRRC28-215ENST00000559774 RALGAPBQ86X10 1494 aa12.36□□□□□ -0.43
LRRC28-215ENST00000559774 METP08581 1390 aa12.36□□□□□ -0.43
LRRC28-215ENST00000559774 LRPPRCP42704 1394 aaKnown RBP12.36□□□□□ -0.43
LRRC28-215ENST00000559774 TECPR2O15040 1411 aa12.36□□□□□ -0.43
LRRC28-215ENST00000559774 ADGRB1O14514 1584 aa12.35□□□□□ -0.43
LRRC28-215ENST00000559774 ROCK2O75116 1388 aaKnown RBP12.35□□□□□ -0.43
LRRC28-215ENST00000559774 AMOTL2Q9Y2J4 779 aa12.34□□□□□ -0.43
LRRC28-215ENST00000559774 YTHDC2Q9H6S0 1430 aaKnown RBP12.34□□□□□ -0.43
LRRC28-215ENST00000559774 NCOA3Q9Y6Q9 1424 aa12.34□□□□□ -0.43
LRRC28-215ENST00000559774 NKTRP30414 1462 aaKnown RBP12.34□□□□□ -0.43
LRRC28-215ENST00000559774 NBPF1Q3BBV0 1214 aa12.33□□□□□ -0.44
LRRC28-215ENST00000559774 TMEM132EQ6IEE7 984 aa12.33□□□□□ -0.44
LRRC28-215ENST00000559774 PTCH1Q13635 1447 aa12.33□□□□□ -0.44
LRRC28-215ENST00000559774 FAM135BQ49AJ0 1406 aa12.33□□□□□ -0.44
LRRC28-215ENST00000559774 SETD1AO15047 1707 aaKnown RBP12.33□□□□□ -0.44
LRRC28-215ENST00000559774 TRPM1Q7Z4N2 1603 aa12.33□□□□□ -0.44
LRRC28-215ENST00000559774 NWD1Q149M9 1564 aa12.32□□□□□ -0.44
LRRC28-215ENST00000559774 PTPRUQ92729 1446 aa12.32□□□□□ -0.44
LRRC28-215ENST00000559774 SLC24A1O60721 1099 aa12.32□□□□□ -0.44
LRRC28-215ENST00000559774 CARD11Q9BXL7 1154 aa12.32□□□□□ -0.44
LRRC28-215ENST00000559774 CPS1P31327 1500 aa12.32□□□□□ -0.44
LRRC28-215ENST00000559774 DLC1Q96QB1 1528 aa12.32□□□□□ -0.44
LRRC28-215ENST00000559774 ASXL1Q8IXJ9 1541 aa12.31□□□□□ -0.44
LRRC28-215ENST00000559774 EIF3AQ14152 1382 aaKnown RBP12.3□□□□□ -0.44
LRRC28-215ENST00000559774 ZNF335Q9H4Z2 1342 aaPredicted RBP12.3□□□□□ -0.44
LRRC28-215ENST00000559774 CHD2O14647 1828 aaKnown RBP12.29□□□□□ -0.44
LRRC28-215ENST00000559774 XRN1Q8IZH2 1706 aaKnown RBP12.28□□□□□ -0.44
LRRC28-215ENST00000559774 PROSER2Q86WR7 435 aaPredicted RBP12.28□□□□□ -0.44
LRRC28-215ENST00000559774 STK26Q9P289 416 aa12.28□□□□□ -0.44
LRRC28-215ENST00000559774 TRAK1Q9UPV9 953 aa12.27□□□□□ -0.45
LRRC28-215ENST00000559774 KNDC1Q76NI1 1749 aa12.27□□□□□ -0.45
LRRC28-215ENST00000559774 ROBO2Q9HCK4 1378 aa12.27□□□□□ -0.45
LRRC28-215ENST00000559774 LTBP4Q8N2S1 1624 aa12.26□□□□□ -0.45
LRRC28-215ENST00000559774 POGKQ9P215 609 aa12.26□□□□□ -0.45
LRRC28-215ENST00000559774 SBNO2Q9Y2G9 1366 aa12.26□□□□□ -0.45
LRRC28-215ENST00000559774 EIF4G2P78344 907 aaKnown RBP eCLIP12.25□□□□□ -0.45
LRRC28-215ENST00000559774 PRAM1Q96QH2 718 aa12.25□□□□□ -0.45
LRRC28-215ENST00000559774 CENPJQ9HC77 1338 aaPredicted RBP12.25□□□□□ -0.45
LRRC28-215ENST00000559774 IQSEC2Q5JU85 1478 aa12.25□□□□□ -0.45
LRRC28-215ENST00000559774 LRRC7Q96NW7 1537 aa12.25□□□□□ -0.45
LRRC28-215ENST00000559774 TMEM94Q12767 1356 aa12.24□□□□□ -0.45
LRRC28-215ENST00000559774 USP47Q96K76 1375 aa12.24□□□□□ -0.45
LRRC28-215ENST00000559774 C19orf44Q9H6X5 657 aa12.24□□□□□ -0.45
LRRC28-215ENST00000559774 DCCP43146 1447 aa12.23□□□□□ -0.45
LRRC28-215ENST00000559774 WAPLQ7Z5K2 1190 aa12.23□□□□□ -0.45
LRRC28-215ENST00000559774 ADGRL3Q9HAR2 1447 aa12.22□□□□□ -0.45
LRRC28-215ENST00000559774 PUS7Q96PZ0 661 aaKnown RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms