RNA–Protein interactions for RNA: ENST00000559658.5

CHRNA3-206, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 2

Gene CHRNA3, Length 1,889 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-206ENST00000559658 NRXN1Q9ULB1 1477 aa24.62■■□□□ 1.53
CHRNA3-206ENST00000559658 UBR1Q8IWV7 1749 aa24.6■■□□□ 1.53
CHRNA3-206ENST00000559658 HSPA5P11021 654 aaKnown RBP24.6■■□□□ 1.53
CHRNA3-206ENST00000559658 ROCK2O75116 1388 aaKnown RBP24.59■■□□□ 1.53
CHRNA3-206ENST00000559658 MYO3AQ8NEV4 1616 aa24.59■■□□□ 1.53
CHRNA3-206ENST00000559658 SENP3Q9H4L4 574 aaPredicted RBP24.56■■□□□ 1.52
CHRNA3-206ENST00000559658 PIK3C2GO75747 1445 aa24.56■■□□□ 1.52
CHRNA3-206ENST00000559658 USP47Q96K76 1375 aa24.55■■□□□ 1.52
CHRNA3-206ENST00000559658 CARD11Q9BXL7 1154 aa24.55■■□□□ 1.52
CHRNA3-206ENST00000559658 LAMC1P11047 1609 aa24.54■■□□□ 1.52
CHRNA3-206ENST00000559658 KIAA1210Q9ULL0 1709 aa24.54■■□□□ 1.52
CHRNA3-206ENST00000559658 GPRASP1Q5JY77 1395 aa24.54■■□□□ 1.52
CHRNA3-206ENST00000559658 STAG3Q9UJ98 1225 aa24.53■■□□□ 1.52
CHRNA3-206ENST00000559658 RPGRIP1LQ68CZ1 1315 aa24.53■■□□□ 1.52
CHRNA3-206ENST00000559658 EIF4G2P78344 907 aaKnown RBP eCLIP24.53■■□□□ 1.52
CHRNA3-206ENST00000559658 KDM5AP29375 1690 aaKnown RBP24.52■■□□□ 1.52
CHRNA3-206ENST00000559658 NLRP1Q9C000 1473 aa24.52■■□□□ 1.52
CHRNA3-206ENST00000559658 CFAP70Q5T0N1 1121 aa24.51■■□□□ 1.51
CHRNA3-206ENST00000559658 IQGAP1P46940 1657 aa24.5■■□□□ 1.51
CHRNA3-206ENST00000559658 ZFYVE9O95405 1425 aa24.5■■□□□ 1.51
CHRNA3-206ENST00000559658 RIMS2Q9UQ26 1411 aa24.49■■□□□ 1.51
CHRNA3-206ENST00000559658 STAC3Q96MF2 364 aa24.49■■□□□ 1.51
CHRNA3-206ENST00000559658 PTPRMP28827 1452 aa24.48■■□□□ 1.51
CHRNA3-206ENST00000559658 ADGRB1O14514 1584 aa24.45■■□□□ 1.5
CHRNA3-206ENST00000559658 CEP170BQ9Y4F5 1589 aaPredicted RBP24.45■■□□□ 1.5
CHRNA3-206ENST00000559658 ASXL1Q8IXJ9 1541 aa24.45■■□□□ 1.5
CHRNA3-206ENST00000559658 C11orf95C9JLR9 678 aaPredicted RBP24.44■■□□□ 1.5
CHRNA3-206ENST00000559658 NRXN3Q9Y4C0 1643 aa24.44■■□□□ 1.5
CHRNA3-206ENST00000559658 VGFO15240 615 aaPredicted RBP24.43■■□□□ 1.5
CHRNA3-206ENST00000559658 TMEM2Q9UHN6 1383 aa24.42■■□□□ 1.5
CHRNA3-206ENST00000559658 ZNF142P52746 1687 aaPredicted RBP24.42■■□□□ 1.5
CHRNA3-206ENST00000559658 SETBP1Q9Y6X0 1596 aa24.42■■□□□ 1.5
CHRNA3-206ENST00000559658 ST20-MTHFSA0A0A6YYL1 179 aa24.41■■□□□ 1.5
CHRNA3-206ENST00000559658 SETD1AO15047 1707 aaKnown RBP24.41■■□□□ 1.5
CHRNA3-206ENST00000559658 C14orf93Q9H972 538 aaKnown RBP24.41■■□□□ 1.5
CHRNA3-206ENST00000559658 POLR1AO95602 1720 aaPredicted RBP24.4■■□□□ 1.5
CHRNA3-206ENST00000559658 DIEXFQ68CQ4 756 aaKnown RBP24.39■■□□□ 1.5
CHRNA3-206ENST00000559658 TMEM132EQ6IEE7 984 aa24.39■■□□□ 1.5
CHRNA3-206ENST00000559658 ALKQ9UM73 1620 aa24.38■■□□□ 1.49
CHRNA3-206ENST00000559658 SCAF11Q99590 1463 aaKnown RBP24.38■■□□□ 1.49
CHRNA3-206ENST00000559658 WASHC2AQ641Q2 1341 aa24.38■■□□□ 1.49
CHRNA3-206ENST00000559658 SLIT1O75093 1534 aa24.36■■□□□ 1.49
CHRNA3-206ENST00000559658 ARHGAP23Q9P227 1491 aa24.36■■□□□ 1.49
CHRNA3-206ENST00000559658 LTKP29376 864 aa24.35■■□□□ 1.49
CHRNA3-206ENST00000559658 KDM4FA0A1W2PPD8 638 aa24.33■■□□□ 1.49
CHRNA3-206ENST00000559658 ARHGEF28Q8N1W1 1705 aaKnown RBP24.32■■□□□ 1.48
CHRNA3-206ENST00000559658 SETD1BQ9UPS6 1966 aaKnown RBP24.32■■□□□ 1.48
CHRNA3-206ENST00000559658 KIF7Q2M1P5 1343 aa24.32■■□□□ 1.48
CHRNA3-206ENST00000559658 CCDC7Q96M83 1385 aa24.31■■□□□ 1.48
CHRNA3-206ENST00000559658 DDX10Q13206 875 aaKnown RBP24.31■■□□□ 1.48
CHRNA3-206ENST00000559658 TESK2Q96S53 571 aa24.3■■□□□ 1.48
CHRNA3-206ENST00000559658 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.28■■□□□ 1.48
CHRNA3-206ENST00000559658 DISP3Q9P2K9 1392 aa24.28■■□□□ 1.48
CHRNA3-206ENST00000559658 TRAK1Q9UPV9 953 aa24.28■■□□□ 1.48
CHRNA3-206ENST00000559658 ADAMTS13Q76LX8 1427 aa24.26■■□□□ 1.47
CHRNA3-206ENST00000559658 TXNDC2Q86VQ3 553 aa24.26■■□□□ 1.47
CHRNA3-206ENST00000559658 QRICH2Q9H0J4 1663 aa24.26■■□□□ 1.47
CHRNA3-206ENST00000559658 THEMISQ8N1K5 641 aaPredicted RBP24.26■■□□□ 1.47
CHRNA3-206ENST00000559658 METP08581 1390 aa24.24■■□□□ 1.47
CHRNA3-206ENST00000559658 PLEKHG1Q9ULL1 1385 aa24.24■■□□□ 1.47
CHRNA3-206ENST00000559658 YTHDC2Q9H6S0 1430 aaKnown RBP24.23■■□□□ 1.47
CHRNA3-206ENST00000559658 EIF3AQ14152 1382 aaKnown RBP24.23■■□□□ 1.47
CHRNA3-206ENST00000559658 STK26Q9P289 416 aa24.23■■□□□ 1.47
CHRNA3-206ENST00000559658 POLR3GLQ9BT43 218 aa24.22■■□□□ 1.47
CHRNA3-206ENST00000559658 BCANQ96GW7 911 aa24.19■■□□□ 1.46
CHRNA3-206ENST00000559658 EID1Q9Y6B2 187 aa24.19■■□□□ 1.46
CHRNA3-206ENST00000559658 MED14O60244 1454 aa24.19■■□□□ 1.46
CHRNA3-206ENST00000559658 HDGFP51858 240 aaKnown RBP24.19■■□□□ 1.46
CHRNA3-206ENST00000559658 SLC26A8Q96RN1 970 aa24.17■■□□□ 1.46
CHRNA3-206ENST00000559658 CENPJQ9HC77 1338 aaPredicted RBP24.16■■□□□ 1.46
CHRNA3-206ENST00000559658 SAFB2Q14151 953 aaKnown RBP eCLIP24.15■■□□□ 1.46
CHRNA3-206ENST00000559658 KNDC1Q76NI1 1749 aa24.15■■□□□ 1.46
CHRNA3-206ENST00000559658 LRPPRCP42704 1394 aaKnown RBP24.14■■□□□ 1.45
CHRNA3-206ENST00000559658 MIER1Q8N108 512 aa24.13■■□□□ 1.45
CHRNA3-206ENST00000559658 PLEKHH1Q9ULM0 1364 aa24.12■■□□□ 1.45
CHRNA3-206ENST00000559658 PTPRUQ92729 1446 aa24.12■■□□□ 1.45
CHRNA3-206ENST00000559658 MYOM1P52179 1685 aa24.12■■□□□ 1.45
CHRNA3-206ENST00000559658 TULP4Q9NRJ4 1543 aa24.12■■□□□ 1.45
CHRNA3-206ENST00000559658 TMF1P82094 1093 aa24.11■■□□□ 1.45
CHRNA3-206ENST00000559658 PRAM1Q96QH2 718 aa24.11■■□□□ 1.45
CHRNA3-206ENST00000559658 SBNO2Q9Y2G9 1366 aa24.11■■□□□ 1.45
CHRNA3-206ENST00000559658 DLC1Q96QB1 1528 aa24.11■■□□□ 1.45
CHRNA3-206ENST00000559658 DIP2AQ14689 1571 aa24.1■■□□□ 1.45
CHRNA3-206ENST00000559658 CPS1P31327 1500 aa24.1■■□□□ 1.45
CHRNA3-206ENST00000559658 ANKLE2Q86XL3 938 aa24.09■■□□□ 1.45
CHRNA3-206ENST00000559658 LMTK3Q96Q04 1460 aa24.08■■□□□ 1.45
CHRNA3-206ENST00000559658 ABCC11Q96J66 1382 aa24.07■■□□□ 1.44
CHRNA3-206ENST00000559658 WAPLQ7Z5K2 1190 aa24.07■■□□□ 1.44
CHRNA3-206ENST00000559658 TECPR2O15040 1411 aa24.07■■□□□ 1.44
CHRNA3-206ENST00000559658 NCKAP5LQ9HCH0 1330 aa24.07■■□□□ 1.44
CHRNA3-206ENST00000559658 HSPA2P54652 639 aa24.07■■□□□ 1.44
CHRNA3-206ENST00000559658 ROBO2Q9HCK4 1378 aa24.06■■□□□ 1.44
CHRNA3-206ENST00000559658 XRN1Q8IZH2 1706 aaKnown RBP24.05■■□□□ 1.44
CHRNA3-206ENST00000559658 NPHP4O75161 1426 aaPredicted RBP24.04■■□□□ 1.44
CHRNA3-206ENST00000559658 MINK1Q8N4C8 1332 aaPredicted RBP24.03■■□□□ 1.44
CHRNA3-206ENST00000559658 TBX22Q9Y458 520 aa24.03■■□□□ 1.44
CHRNA3-206ENST00000559658 POGKQ9P215 609 aa24.02■■□□□ 1.44
CHRNA3-206ENST00000559658 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.99■■□□□ 1.43
CHRNA3-206ENST00000559658 CHD2O14647 1828 aaKnown RBP23.99■■□□□ 1.43
CHRNA3-206ENST00000559658 AMOTL2Q9Y2J4 779 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms