RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 PPLO60437 1756 aa31.7■■■□□ 2.67
SNX1-206ENST00000559389 NCKAP5LQ9HCH0 1330 aa31.7■■■□□ 2.66
SNX1-206ENST00000559389 IQGAP1P46940 1657 aa31.69■■■□□ 2.66
SNX1-206ENST00000559389 LTKP29376 864 aa31.67■■■□□ 2.66
SNX1-206ENST00000559389 EID1Q9Y6B2 187 aa31.66■■■□□ 2.66
SNX1-206ENST00000559389 NPHP4O75161 1426 aaPredicted RBP31.66■■■□□ 2.66
SNX1-206ENST00000559389 ZNF326Q5BKZ1 582 aaKnown RBP31.65■■■□□ 2.66
SNX1-206ENST00000559389 TXNDC2Q86VQ3 553 aa31.65■■■□□ 2.66
SNX1-206ENST00000559389 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.62■■■□□ 2.65
SNX1-206ENST00000559389 RPGRIP1LQ68CZ1 1315 aa31.61■■■□□ 2.65
SNX1-206ENST00000559389 PLEKHG1Q9ULL1 1385 aa31.6■■■□□ 2.65
SNX1-206ENST00000559389 HDGFP51858 240 aaKnown RBP31.59■■■□□ 2.65
SNX1-206ENST00000559389 PPP1R15AO75807 674 aaPredicted RBP31.57■■■□□ 2.64
SNX1-206ENST00000559389 RGL3Q3MIN7 710 aa31.57■■■□□ 2.64
SNX1-206ENST00000559389 MYOM2P54296 1465 aa31.57■■■□□ 2.64
SNX1-206ENST00000559389 NRXN3Q9Y4C0 1643 aa31.57■■■□□ 2.64
SNX1-206ENST00000559389 SETBP1Q9Y6X0 1596 aa31.56■■■□□ 2.64
SNX1-206ENST00000559389 DMRT2Q9Y5R5 561 aa31.56■■■□□ 2.64
SNX1-206ENST00000559389 SIN3AQ96ST3 1273 aa31.55■■■□□ 2.64
SNX1-206ENST00000559389 NUTM2DQ5VT03 806 aaPredicted RBP31.54■■■□□ 2.64
SNX1-206ENST00000559389 CLSPNQ9HAW4 1339 aa31.52■■■□□ 2.64
SNX1-206ENST00000559389 DIP2AQ14689 1571 aa31.52■■■□□ 2.64
SNX1-206ENST00000559389 NRXN1Q9ULB1 1477 aa31.5■■■□□ 2.63
SNX1-206ENST00000559389 ADAMTS13Q76LX8 1427 aa31.49■■■□□ 2.63
SNX1-206ENST00000559389 VGFO15240 615 aaPredicted RBP31.48■■■□□ 2.63
SNX1-206ENST00000559389 SETD1AO15047 1707 aaKnown RBP31.46■■■□□ 2.63
SNX1-206ENST00000559389 PIK3C2GO75747 1445 aa31.45■■■□□ 2.63
SNX1-206ENST00000559389 NEUROD1Q13562 356 aa31.45■■■□□ 2.63
SNX1-206ENST00000559389 CCER1Q8TC90 406 aaPredicted RBP31.44■■■□□ 2.62
SNX1-206ENST00000559389 ADGRF5Q8IZF2 1346 aa31.44■■■□□ 2.62
SNX1-206ENST00000559389 LAMC1P11047 1609 aa31.4■■■□□ 2.62
SNX1-206ENST00000559389 ALKQ9UM73 1620 aa31.4■■■□□ 2.62
SNX1-206ENST00000559389 BCANQ96GW7 911 aa31.4■■■□□ 2.62
SNX1-206ENST00000559389 SENP3Q9H4L4 574 aaPredicted RBP31.4■■■□□ 2.62
SNX1-206ENST00000559389 DCAF11Q8TEB1 546 aa31.39■■■□□ 2.62
SNX1-206ENST00000559389 SLC26A8Q96RN1 970 aa31.39■■■□□ 2.62
SNX1-206ENST00000559389 STAC3Q96MF2 364 aa31.38■■■□□ 2.61
SNX1-206ENST00000559389 NWD1Q149M9 1564 aa31.38■■■□□ 2.61
SNX1-206ENST00000559389 TONSLQ96HA7 1378 aa31.36■■■□□ 2.61
SNX1-206ENST00000559389 TBX22Q9Y458 520 aa31.36■■■□□ 2.61
SNX1-206ENST00000559389 L3MBTL2Q969R5 705 aa31.35■■■□□ 2.61
SNX1-206ENST00000559389 STRCP1A6NGW2 1772 aa31.34■■■□□ 2.61
SNX1-206ENST00000559389 LTBP4Q8N2S1 1624 aa31.33■■■□□ 2.61
SNX1-206ENST00000559389 ASXL1Q8IXJ9 1541 aa31.33■■■□□ 2.61
SNX1-206ENST00000559389 PIK3R4Q99570 1358 aa31.32■■■□□ 2.6
SNX1-206ENST00000559389 ZNF335Q9H4Z2 1342 aaPredicted RBP31.32■■■□□ 2.6
SNX1-206ENST00000559389 KDM2AQ9Y2K7 1162 aa31.32■■■□□ 2.6
SNX1-206ENST00000559389 PRAG1Q86YV5 1406 aa31.32■■■□□ 2.6
SNX1-206ENST00000559389 CHD2O14647 1828 aaKnown RBP31.31■■■□□ 2.6
SNX1-206ENST00000559389 XRN1Q8IZH2 1706 aaKnown RBP31.3■■■□□ 2.6
SNX1-206ENST00000559389 METP08581 1390 aa31.29■■■□□ 2.6
SNX1-206ENST00000559389 CPS1P31327 1500 aa31.28■■■□□ 2.6
SNX1-206ENST00000559389 KIAA1210Q9ULL0 1709 aa31.27■■■□□ 2.6
SNX1-206ENST00000559389 NKTRP30414 1462 aaKnown RBP31.27■■■□□ 2.6
SNX1-206ENST00000559389 PTPRUQ92729 1446 aa31.26■■■□□ 2.6
SNX1-206ENST00000559389 ADGRB1O14514 1584 aa31.24■■■□□ 2.59
SNX1-206ENST00000559389 C14orf93Q9H972 538 aaKnown RBP31.23■■■□□ 2.59
SNX1-206ENST00000559389 TRPM1Q7Z4N2 1603 aa31.21■■■□□ 2.59
SNX1-206ENST00000559389 KCNA6P17658 529 aa31.21■■■□□ 2.59
SNX1-206ENST00000559389 CFAP70Q5T0N1 1121 aa31.21■■■□□ 2.59
SNX1-206ENST00000559389 KNDC1Q76NI1 1749 aa31.2■■■□□ 2.58
SNX1-206ENST00000559389 TIMELESSQ9UNS1 1208 aa31.18■■■□□ 2.58
SNX1-206ENST00000559389 LRRC7Q96NW7 1537 aa31.16■■■□□ 2.58
SNX1-206ENST00000559389 TECPR2O15040 1411 aa31.15■■■□□ 2.58
SNX1-206ENST00000559389 PTCH1Q13635 1447 aa31.15■■■□□ 2.58
SNX1-206ENST00000559389 LRPPRCP42704 1394 aaKnown RBP31.14■■■□□ 2.58
SNX1-206ENST00000559389 AMOTL2Q9Y2J4 779 aa31.13■■■□□ 2.57
SNX1-206ENST00000559389 YTHDC2Q9H6S0 1430 aaKnown RBP31.13■■■□□ 2.57
SNX1-206ENST00000559389 TMEM132EQ6IEE7 984 aa31.11■■■□□ 2.57
SNX1-206ENST00000559389 XIRP1Q702N8 1843 aaKnown RBP31.11■■■□□ 2.57
SNX1-206ENST00000559389 RALGAPBQ86X10 1494 aa31.1■■■□□ 2.57
SNX1-206ENST00000559389 NBPF8Q3BBV2 869 aa31.1■■■□□ 2.57
SNX1-206ENST00000559389 IQSEC2Q5JU85 1478 aa31.08■■■□□ 2.57
SNX1-206ENST00000559389 ABCC11Q96J66 1382 aa31.07■■■□□ 2.56
SNX1-206ENST00000559389 DLC1Q96QB1 1528 aa31.07■■■□□ 2.56
SNX1-206ENST00000559389 ROBO2Q9HCK4 1378 aa31.05■■■□□ 2.56
SNX1-206ENST00000559389 TMEM94Q12767 1356 aa31.05■■■□□ 2.56
SNX1-206ENST00000559389 ARHGEF28Q8N1W1 1705 aaKnown RBP31.04■■■□□ 2.56
SNX1-206ENST00000559389 NBPF1Q3BBV0 1214 aa31.02■■■□□ 2.56
SNX1-206ENST00000559389 PROSER2Q86WR7 435 aaPredicted RBP31.02■■■□□ 2.56
SNX1-206ENST00000559389 GPRASP1Q5JY77 1395 aa31.02■■■□□ 2.56
SNX1-206ENST00000559389 CERKQ8TCT0 537 aa31.01■■■□□ 2.55
SNX1-206ENST00000559389 ROCK2O75116 1388 aaKnown RBP31.01■■■□□ 2.55
SNX1-206ENST00000559389 FAM135BQ49AJ0 1406 aa31■■■□□ 2.55
SNX1-206ENST00000559389 NCOA3Q9Y6Q9 1424 aa31■■■□□ 2.55
SNX1-206ENST00000559389 STK26Q9P289 416 aa31■■■□□ 2.55
SNX1-206ENST00000559389 NALCNQ8IZF0 1738 aa30.99■■■□□ 2.55
SNX1-206ENST00000559389 RBM33Q96EV2 1170 aaKnown RBP30.95■■■□□ 2.55
SNX1-206ENST00000559389 ADGRL3Q9HAR2 1447 aa30.94■■■□□ 2.54
SNX1-206ENST00000559389 PLEKHH1Q9ULM0 1364 aa30.93■■■□□ 2.54
SNX1-206ENST00000559389 SIRT1Q96EB6 747 aa30.93■■■□□ 2.54
SNX1-206ENST00000559389 TRAK1Q9UPV9 953 aa30.92■■■□□ 2.54
SNX1-206ENST00000559389 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.91■■■□□ 2.54
SNX1-206ENST00000559389 MSH6P52701 1360 aa30.89■■■□□ 2.54
SNX1-206ENST00000559389 DCCP43146 1447 aa30.88■■■□□ 2.53
SNX1-206ENST00000559389 ADGRB2O60241 1585 aa30.88■■■□□ 2.53
SNX1-206ENST00000559389 CDC42BPGQ6DT37 1551 aa30.88■■■□□ 2.53
SNX1-206ENST00000559389 WAPLQ7Z5K2 1190 aa30.87■■■□□ 2.53
SNX1-206ENST00000559389 PRAM1Q96QH2 718 aa30.87■■■□□ 2.53
SNX1-206ENST00000559389 CARD11Q9BXL7 1154 aa30.85■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms