RNA–Protein interactions for RNA: ENST00000559061.5

SNX1-204, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 550 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-204ENST00000559061 RIMS2Q9UQ26 1411 aa16.98■□□□□ 0.31
SNX1-204ENST00000559061 PPLO60437 1756 aa16.98■□□□□ 0.31
SNX1-204ENST00000559061 STRCP1A6NGW2 1772 aa16.97■□□□□ 0.31
SNX1-204ENST00000559061 DHX57Q6P158 1386 aaKnown RBP16.96■□□□□ 0.31
SNX1-204ENST00000559061 LTBP4Q8N2S1 1624 aa16.96■□□□□ 0.3
SNX1-204ENST00000559061 CCDC144AA2RUR9 1427 aa16.96■□□□□ 0.3
SNX1-204ENST00000559061 ANKLE2Q86XL3 938 aa16.95■□□□□ 0.3
SNX1-204ENST00000559061 CHGAP10645 457 aaKnown RBP16.93■□□□□ 0.3
SNX1-204ENST00000559061 TXNDC2Q86VQ3 553 aa16.93■□□□□ 0.3
SNX1-204ENST00000559061 STAG3Q9UJ98 1225 aa16.93■□□□□ 0.3
SNX1-204ENST00000559061 SETD1AO15047 1707 aaKnown RBP16.93■□□□□ 0.3
SNX1-204ENST00000559061 SETBP1Q9Y6X0 1596 aa16.91■□□□□ 0.3
SNX1-204ENST00000559061 ADAMTS13Q76LX8 1427 aa16.91■□□□□ 0.3
SNX1-204ENST00000559061 NUTM2DQ5VT03 806 aaPredicted RBP16.91■□□□□ 0.3
SNX1-204ENST00000559061 PLEKHG1Q9ULL1 1385 aa16.9■□□□□ 0.3
SNX1-204ENST00000559061 PCGF6Q9BYE7 350 aa16.9■□□□□ 0.3
SNX1-204ENST00000559061 ZNF335Q9H4Z2 1342 aaPredicted RBP16.89■□□□□ 0.29
SNX1-204ENST00000559061 DMRT2Q9Y5R5 561 aa16.87■□□□□ 0.29
SNX1-204ENST00000559061 NWD1Q149M9 1564 aa16.86■□□□□ 0.29
SNX1-204ENST00000559061 EID1Q9Y6B2 187 aa16.86■□□□□ 0.29
SNX1-204ENST00000559061 NRXN1Q9ULB1 1477 aa16.85■□□□□ 0.29
SNX1-204ENST00000559061 DIP2AQ14689 1571 aa16.85■□□□□ 0.29
SNX1-204ENST00000559061 CHD2O14647 1828 aaKnown RBP16.84■□□□□ 0.29
SNX1-204ENST00000559061 XIRP1Q702N8 1843 aaKnown RBP16.84■□□□□ 0.29
SNX1-204ENST00000559061 MYOM2P54296 1465 aa16.83■□□□□ 0.28
SNX1-204ENST00000559061 ZNF326Q5BKZ1 582 aaKnown RBP16.83■□□□□ 0.28
SNX1-204ENST00000559061 ASXL1Q8IXJ9 1541 aa16.82■□□□□ 0.28
SNX1-204ENST00000559061 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.82■□□□□ 0.28
SNX1-204ENST00000559061 SLC26A8Q96RN1 970 aa16.82■□□□□ 0.28
SNX1-204ENST00000559061 XRN1Q8IZH2 1706 aaKnown RBP16.82■□□□□ 0.28
SNX1-204ENST00000559061 ALKQ9UM73 1620 aa16.81■□□□□ 0.28
SNX1-204ENST00000559061 PTPRUQ92729 1446 aa16.81■□□□□ 0.28
SNX1-204ENST00000559061 RPGRIP1LQ68CZ1 1315 aa16.81■□□□□ 0.28
SNX1-204ENST00000559061 ADGRF5Q8IZF2 1346 aa16.81■□□□□ 0.28
SNX1-204ENST00000559061 RGL3Q3MIN7 710 aa16.81■□□□□ 0.28
SNX1-204ENST00000559061 PIK3C2GO75747 1445 aa16.8■□□□□ 0.28
SNX1-204ENST00000559061 PPP1R15AO75807 674 aaPredicted RBP16.79■□□□□ 0.28
SNX1-204ENST00000559061 SIN3AQ96ST3 1273 aa16.79■□□□□ 0.28
SNX1-204ENST00000559061 METP08581 1390 aa16.78■□□□□ 0.28
SNX1-204ENST00000559061 CPS1P31327 1500 aa16.78■□□□□ 0.28
SNX1-204ENST00000559061 LRRC7Q96NW7 1537 aa16.78■□□□□ 0.28
SNX1-204ENST00000559061 TBX22Q9Y458 520 aa16.76■□□□□ 0.27
SNX1-204ENST00000559061 HDGFP51858 240 aaKnown RBP16.75■□□□□ 0.27
SNX1-204ENST00000559061 NKTRP30414 1462 aaKnown RBP16.73■□□□□ 0.27
SNX1-204ENST00000559061 VGFO15240 615 aaPredicted RBP16.73■□□□□ 0.27
SNX1-204ENST00000559061 CERKQ8TCT0 537 aa16.73■□□□□ 0.27
SNX1-204ENST00000559061 LAMC1P11047 1609 aa16.73■□□□□ 0.27
SNX1-204ENST00000559061 PIK3R4Q99570 1358 aa16.73■□□□□ 0.27
SNX1-204ENST00000559061 ADGRB1O14514 1584 aa16.72■□□□□ 0.27
SNX1-204ENST00000559061 PRAG1Q86YV5 1406 aa16.72■□□□□ 0.27
SNX1-204ENST00000559061 KCNA6P17658 529 aa16.72■□□□□ 0.27
SNX1-204ENST00000559061 IQSEC2Q5JU85 1478 aa16.72■□□□□ 0.27
SNX1-204ENST00000559061 KNDC1Q76NI1 1749 aa16.7■□□□□ 0.26
SNX1-204ENST00000559061 BCANQ96GW7 911 aa16.69■□□□□ 0.26
SNX1-204ENST00000559061 DCAF11Q8TEB1 546 aa16.68■□□□□ 0.26
SNX1-204ENST00000559061 KIAA1210Q9ULL0 1709 aa16.67■□□□□ 0.26
SNX1-204ENST00000559061 L3MBTL2Q969R5 705 aa16.67■□□□□ 0.26
SNX1-204ENST00000559061 RBM33Q96EV2 1170 aaKnown RBP16.67■□□□□ 0.26
SNX1-204ENST00000559061 C14orf93Q9H972 538 aaKnown RBP16.67■□□□□ 0.26
SNX1-204ENST00000559061 NALCNQ8IZF0 1738 aa16.67■□□□□ 0.26
SNX1-204ENST00000559061 TMEM94Q12767 1356 aa16.66■□□□□ 0.26
SNX1-204ENST00000559061 TECPR2O15040 1411 aa16.66■□□□□ 0.26
SNX1-204ENST00000559061 NEUROD1Q13562 356 aa16.66■□□□□ 0.26
SNX1-204ENST00000559061 CFAP70Q5T0N1 1121 aa16.66■□□□□ 0.26
SNX1-204ENST00000559061 ROBO2Q9HCK4 1378 aa16.65■□□□□ 0.26
SNX1-204ENST00000559061 PTCH1Q13635 1447 aa16.65■□□□□ 0.26
SNX1-204ENST00000559061 AMOTL2Q9Y2J4 779 aa16.65■□□□□ 0.26
SNX1-204ENST00000559061 KDM2AQ9Y2K7 1162 aa16.65■□□□□ 0.26
SNX1-204ENST00000559061 TRPM1Q7Z4N2 1603 aa16.65■□□□□ 0.26
SNX1-204ENST00000559061 TMEM132EQ6IEE7 984 aa16.63■□□□□ 0.25
SNX1-204ENST00000559061 LRPPRCP42704 1394 aaKnown RBP16.63■□□□□ 0.25
SNX1-204ENST00000559061 YTHDC2Q9H6S0 1430 aaKnown RBP16.62■□□□□ 0.25
SNX1-204ENST00000559061 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.62■□□□□ 0.25
SNX1-204ENST00000559061 ARHGEF28Q8N1W1 1705 aaKnown RBP16.61■□□□□ 0.25
SNX1-204ENST00000559061 PLEKHH1Q9ULM0 1364 aa16.6■□□□□ 0.25
SNX1-204ENST00000559061 NBPF8Q3BBV2 869 aa16.59■□□□□ 0.25
SNX1-204ENST00000559061 PROSER2Q86WR7 435 aaPredicted RBP16.59■□□□□ 0.25
SNX1-204ENST00000559061 STAC3Q96MF2 364 aa16.59■□□□□ 0.25
SNX1-204ENST00000559061 ABCC11Q96J66 1382 aa16.59■□□□□ 0.25
SNX1-204ENST00000559061 DLC1Q96QB1 1528 aa16.59■□□□□ 0.25
SNX1-204ENST00000559061 NCOA3Q9Y6Q9 1424 aa16.58■□□□□ 0.24
SNX1-204ENST00000559061 CLSPNQ9HAW4 1339 aa16.57■□□□□ 0.24
SNX1-204ENST00000559061 NBPF1Q3BBV0 1214 aa16.57■□□□□ 0.24
SNX1-204ENST00000559061 ADGRL3Q9HAR2 1447 aa16.56■□□□□ 0.24
SNX1-204ENST00000559061 FAM135BQ49AJ0 1406 aa16.54■□□□□ 0.24
SNX1-204ENST00000559061 TONSLQ96HA7 1378 aa16.54■□□□□ 0.24
SNX1-204ENST00000559061 FBXO41Q8TF61 875 aa16.54■□□□□ 0.24
SNX1-204ENST00000559061 STK26Q9P289 416 aa16.54■□□□□ 0.24
SNX1-204ENST00000559061 WAPLQ7Z5K2 1190 aa16.53■□□□□ 0.24
SNX1-204ENST00000559061 RALGAPBQ86X10 1494 aa16.53■□□□□ 0.24
SNX1-204ENST00000559061 CDC42BPGQ6DT37 1551 aa16.52■□□□□ 0.24
SNX1-204ENST00000559061 ILDR1Q86SU0 546 aaPredicted RBP16.52■□□□□ 0.24
SNX1-204ENST00000559061 GPRASP1Q5JY77 1395 aa16.51■□□□□ 0.23
SNX1-204ENST00000559061 ADGRB2O60241 1585 aa16.51■□□□□ 0.23
SNX1-204ENST00000559061 CCER1Q8TC90 406 aaPredicted RBP16.51■□□□□ 0.23
SNX1-204ENST00000559061 DCCP43146 1447 aa16.51■□□□□ 0.23
SNX1-204ENST00000559061 MSH6P52701 1360 aa16.51■□□□□ 0.23
SNX1-204ENST00000559061 ROBO1Q9Y6N7 1651 aa16.5■□□□□ 0.23
SNX1-204ENST00000559061 UBAP1LF5GYI3 381 aa16.5■□□□□ 0.23
SNX1-204ENST00000559061 MST1RQ04912 1400 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms