RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 HFM1A2PYH4 1435 aa14.46□□□□□ -0.09
SPG11-214ENST00000558989 NOS1P29475 1434 aa14.46□□□□□ -0.09
SPG11-214ENST00000558989 CERKQ8TCT0 537 aa14.46□□□□□ -0.09
SPG11-214ENST00000558989 IQGAP1P46940 1657 aa14.45□□□□□ -0.1
SPG11-214ENST00000558989 RPRD2Q5VT52 1461 aaKnown RBP14.45□□□□□ -0.1
SPG11-214ENST00000558989 TXNDC2Q86VQ3 553 aa14.45□□□□□ -0.1
SPG11-214ENST00000558989 SPHKAPQ2M3C7 1700 aa14.44□□□□□ -0.1
SPG11-214ENST00000558989 NPHP4O75161 1426 aaPredicted RBP14.44□□□□□ -0.1
SPG11-214ENST00000558989 LTKP29376 864 aa14.43□□□□□ -0.1
SPG11-214ENST00000558989 ADGRB3O60242 1522 aa14.43□□□□□ -0.1
SPG11-214ENST00000558989 NUTM2DQ5VT03 806 aaPredicted RBP14.43□□□□□ -0.1
SPG11-214ENST00000558989 LTBP4Q8N2S1 1624 aa14.42□□□□□ -0.1
SPG11-214ENST00000558989 SLC52A1Q9NWF4 448 aa14.41□□□□□ -0.1
SPG11-214ENST00000558989 EID1Q9Y6B2 187 aa14.41□□□□□ -0.1
SPG11-214ENST00000558989 SCAF11Q99590 1463 aaKnown RBP14.41□□□□□ -0.1
SPG11-214ENST00000558989 TMEM2Q9UHN6 1383 aa14.4□□□□□ -0.1
SPG11-214ENST00000558989 TMEM131LA2VDJ0 1609 aa14.4□□□□□ -0.1
SPG11-214ENST00000558989 SLIT1O75093 1534 aa14.4□□□□□ -0.1
SPG11-214ENST00000558989 KDM5AP29375 1690 aaKnown RBP14.4□□□□□ -0.1
SPG11-214ENST00000558989 FBXO41Q8TF61 875 aa14.39□□□□□ -0.11
SPG11-214ENST00000558989 ARHGAP23Q9P227 1491 aa14.39□□□□□ -0.11
SPG11-214ENST00000558989 STRCP1A6NGW2 1772 aa14.38□□□□□ -0.11
SPG11-214ENST00000558989 MED14O60244 1454 aa14.38□□□□□ -0.11
SPG11-214ENST00000558989 PPP1R15AO75807 674 aaPredicted RBP14.38□□□□□ -0.11
SPG11-214ENST00000558989 GTF3C3Q9Y5Q9 886 aa14.38□□□□□ -0.11
SPG11-214ENST00000558989 KIF1BO60333 1816 aa14.37□□□□□ -0.11
SPG11-214ENST00000558989 CLTCL1P53675 1640 aa14.37□□□□□ -0.11
SPG11-214ENST00000558989 SLC26A8Q96RN1 970 aa14.36□□□□□ -0.11
SPG11-214ENST00000558989 ZNF326Q5BKZ1 582 aaKnown RBP14.36□□□□□ -0.11
SPG11-214ENST00000558989 SETD5Q9C0A6 1442 aa14.35□□□□□ -0.11
SPG11-214ENST00000558989 RIMS2Q9UQ26 1411 aa14.35□□□□□ -0.11
SPG11-214ENST00000558989 RAB3GAP2Q9H2M9 1393 aa14.33□□□□□ -0.12
SPG11-214ENST00000558989 TRPM2O94759 1503 aa14.32□□□□□ -0.12
SPG11-214ENST00000558989 MPHOSPH9Q99550 1183 aa14.32□□□□□ -0.12
SPG11-214ENST00000558989 ZFYVE9O95405 1425 aa14.31□□□□□ -0.12
SPG11-214ENST00000558989 UBAP1LF5GYI3 381 aa14.3□□□□□ -0.12
SPG11-214ENST00000558989 SCAF1Q9H7N4 1312 aaKnown RBP14.3□□□□□ -0.12
SPG11-214ENST00000558989 HDGFP51858 240 aaKnown RBP14.29□□□□□ -0.12
SPG11-214ENST00000558989 RBM33Q96EV2 1170 aaKnown RBP14.29□□□□□ -0.12
SPG11-214ENST00000558989 CPS1P31327 1500 aa14.29□□□□□ -0.12
SPG11-214ENST00000558989 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.27□□□□□ -0.12
SPG11-214ENST00000558989 XIRP1Q702N8 1843 aaKnown RBP14.27□□□□□ -0.12
SPG11-214ENST00000558989 PIP4K2BP78356 416 aa14.27□□□□□ -0.13
SPG11-214ENST00000558989 PLEKHG1Q9ULL1 1385 aa14.27□□□□□ -0.13
SPG11-214ENST00000558989 CHD2O14647 1828 aaKnown RBP14.25□□□□□ -0.13
SPG11-214ENST00000558989 RGL3Q3MIN7 710 aa14.25□□□□□ -0.13
SPG11-214ENST00000558989 LRRC7Q96NW7 1537 aa14.25□□□□□ -0.13
SPG11-214ENST00000558989 IQSEC2Q5JU85 1478 aa14.25□□□□□ -0.13
SPG11-214ENST00000558989 CCDC144AA2RUR9 1427 aa14.24□□□□□ -0.13
SPG11-214ENST00000558989 NEXMIFQ5QGS0 1516 aa14.23□□□□□ -0.13
SPG11-214ENST00000558989 PROSER2Q86WR7 435 aaPredicted RBP14.23□□□□□ -0.13
SPG11-214ENST00000558989 PPLO60437 1756 aa14.23□□□□□ -0.13
SPG11-214ENST00000558989 KCNA6P17658 529 aa14.22□□□□□ -0.13
SPG11-214ENST00000558989 ADAMTS13Q76LX8 1427 aa14.21□□□□□ -0.13
SPG11-214ENST00000558989 NRXN3Q9Y4C0 1643 aa14.21□□□□□ -0.13
SPG11-214ENST00000558989 TOM1O60784 492 aa14.2□□□□□ -0.14
SPG11-214ENST00000558989 TMEM94Q12767 1356 aa14.19□□□□□ -0.14
SPG11-214ENST00000558989 TBX22Q9Y458 520 aa14.19□□□□□ -0.14
SPG11-214ENST00000558989 NWD1Q149M9 1564 aa14.18□□□□□ -0.14
SPG11-214ENST00000558989 C14orf37Q86TY3 774 aa14.18□□□□□ -0.14
SPG11-214ENST00000558989 DIP2AQ14689 1571 aa14.17□□□□□ -0.14
SPG11-214ENST00000558989 AMOTL2Q9Y2J4 779 aa14.17□□□□□ -0.14
SPG11-214ENST00000558989 SETBP1Q9Y6X0 1596 aa14.16□□□□□ -0.14
SPG11-214ENST00000558989 IFT172Q9UG01 1749 aa14.16□□□□□ -0.14
SPG11-214ENST00000558989 ALKQ9UM73 1620 aa14.16□□□□□ -0.14
SPG11-214ENST00000558989 PTPRUQ92729 1446 aa14.16□□□□□ -0.14
SPG11-214ENST00000558989 ACIN1Q9UKV3 1341 aaKnown RBP14.16□□□□□ -0.14
SPG11-214ENST00000558989 METP08581 1390 aa14.15□□□□□ -0.14
SPG11-214ENST00000558989 VGFO15240 615 aaPredicted RBP14.15□□□□□ -0.14
SPG11-214ENST00000558989 ADGRF5Q8IZF2 1346 aa14.14□□□□□ -0.15
SPG11-214ENST00000558989 NKTRP30414 1462 aaKnown RBP14.14□□□□□ -0.15
SPG11-214ENST00000558989 SPATA31E1Q6ZUB1 1445 aa14.13□□□□□ -0.15
SPG11-214ENST00000558989 RPGRIP1LQ68CZ1 1315 aa14.13□□□□□ -0.15
SPG11-214ENST00000558989 SETD1AO15047 1707 aaKnown RBP14.13□□□□□ -0.15
SPG11-214ENST00000558989 HSPA1LP34931 641 aa14.12□□□□□ -0.15
SPG11-214ENST00000558989 ANKRD30BQ9BXX2 1392 aa14.12□□□□□ -0.15
SPG11-214ENST00000558989 XRN1Q8IZH2 1706 aaKnown RBP14.11□□□□□ -0.15
SPG11-214ENST00000558989 HRCP23327 699 aa14.11□□□□□ -0.15
SPG11-214ENST00000558989 MSH6P52701 1360 aa14.11□□□□□ -0.15
SPG11-214ENST00000558989 KDM2AQ9Y2K7 1162 aa14.11□□□□□ -0.15
SPG11-214ENST00000558989 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.1□□□□□ -0.15
SPG11-214ENST00000558989 PIK3R4Q99570 1358 aa14.1□□□□□ -0.15
SPG11-214ENST00000558989 STK26Q9P289 416 aa14.08□□□□□ -0.15
SPG11-214ENST00000558989 TMEM132AQ24JP5 1023 aa14.08□□□□□ -0.16
SPG11-214ENST00000558989 TMEM132EQ6IEE7 984 aa14.08□□□□□ -0.16
SPG11-214ENST00000558989 ROBO1Q9Y6N7 1651 aa14.08□□□□□ -0.16
SPG11-214ENST00000558989 TRIM26Q12899 539 aaPredicted RBP14.07□□□□□ -0.16
SPG11-214ENST00000558989 DCAF11Q8TEB1 546 aa14.06□□□□□ -0.16
SPG11-214ENST00000558989 NALCNQ8IZF0 1738 aa14.06□□□□□ -0.16
SPG11-214ENST00000558989 ATF3P18847 181 aa14.05□□□□□ -0.16
SPG11-214ENST00000558989 CFAP70Q5T0N1 1121 aa14.04□□□□□ -0.16
SPG11-214ENST00000558989 SLAIN2Q9P270 581 aa14.04□□□□□ -0.16
SPG11-214ENST00000558989 C19orf44Q9H6X5 657 aa14.04□□□□□ -0.16
SPG11-214ENST00000558989 PIK3C2GO75747 1445 aa14.03□□□□□ -0.16
SPG11-214ENST00000558989 ROBO2Q9HCK4 1378 aa14.03□□□□□ -0.16
SPG11-214ENST00000558989 ASXL1Q8IXJ9 1541 aa14.02□□□□□ -0.16
SPG11-214ENST00000558989 NEUROD1Q13562 356 aa14.02□□□□□ -0.16
SPG11-214ENST00000558989 SIN3AQ96ST3 1273 aa14.01□□□□□ -0.17
SPG11-214ENST00000558989 PHLPP1O60346 1717 aa14.01□□□□□ -0.17
SPG11-214ENST00000558989 WAPLQ7Z5K2 1190 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms