RNA–Protein interactions for RNA: ENST00000558400.1

TPM1-213, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-213ENST00000558400 LTKP29376 864 aa12.61□□□□□ -0.39
TPM1-213ENST00000558400 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.61□□□□□ -0.39
TPM1-213ENST00000558400 IQGAP3Q86VI3 1631 aa12.61□□□□□ -0.39
TPM1-213ENST00000558400 CHGAP10645 457 aaKnown RBP12.6□□□□□ -0.39
TPM1-213ENST00000558400 HRCP23327 699 aa12.6□□□□□ -0.39
TPM1-213ENST00000558400 STRCP1A6NGW2 1772 aa12.6□□□□□ -0.39
TPM1-213ENST00000558400 NPHP4O75161 1426 aaPredicted RBP12.6□□□□□ -0.39
TPM1-213ENST00000558400 SETD5Q9C0A6 1442 aa12.6□□□□□ -0.39
TPM1-213ENST00000558400 RGS17Q9UGC6 210 aaPredicted RBP12.59□□□□□ -0.39
TPM1-213ENST00000558400 ARHGAP23Q9P227 1491 aa12.59□□□□□ -0.39
TPM1-213ENST00000558400 SLIT1O75093 1534 aa12.58□□□□□ -0.4
TPM1-213ENST00000558400 GCC2Q8IWJ2 1684 aa12.58□□□□□ -0.4
TPM1-213ENST00000558400 MPHOSPH9Q99550 1183 aa12.58□□□□□ -0.4
TPM1-213ENST00000558400 SCAF11Q99590 1463 aaKnown RBP12.58□□□□□ -0.4
TPM1-213ENST00000558400 BCANQ96GW7 911 aa12.57□□□□□ -0.4
TPM1-213ENST00000558400 IQGAP1P46940 1657 aa12.57□□□□□ -0.4
TPM1-213ENST00000558400 PPP1R15AO75807 674 aaPredicted RBP12.56□□□□□ -0.4
TPM1-213ENST00000558400 KDM5AP29375 1690 aaKnown RBP12.56□□□□□ -0.4
TPM1-213ENST00000558400 UBR1Q8IWV7 1749 aa12.56□□□□□ -0.4
TPM1-213ENST00000558400 PIK3C2BO00750 1634 aa12.55□□□□□ -0.4
TPM1-213ENST00000558400 E9PCH4 1651 aa12.54□□□□□ -0.4
TPM1-213ENST00000558400 ZNF326Q5BKZ1 582 aaKnown RBP12.54□□□□□ -0.4
TPM1-213ENST00000558400 LRRC7Q96NW7 1537 aa12.53□□□□□ -0.4
TPM1-213ENST00000558400 TBX22Q9Y458 520 aa12.53□□□□□ -0.4
TPM1-213ENST00000558400 RIMS2Q9UQ26 1411 aa12.53□□□□□ -0.4
TPM1-213ENST00000558400 ADGRB3O60242 1522 aa12.52□□□□□ -0.4
TPM1-213ENST00000558400 XIRP1Q702N8 1843 aaKnown RBP12.52□□□□□ -0.41
TPM1-213ENST00000558400 KCNA6P17658 529 aa12.51□□□□□ -0.41
TPM1-213ENST00000558400 SLC26A8Q96RN1 970 aa12.51□□□□□ -0.41
TPM1-213ENST00000558400 RPGRIP1LQ68CZ1 1315 aa12.51□□□□□ -0.41
TPM1-213ENST00000558400 RAB3GAP2Q9H2M9 1393 aa12.51□□□□□ -0.41
TPM1-213ENST00000558400 PLEKHG1Q9ULL1 1385 aa12.51□□□□□ -0.41
TPM1-213ENST00000558400 VGFO15240 615 aaPredicted RBP12.5□□□□□ -0.41
TPM1-213ENST00000558400 POTEAQ6S8J7 498 aa12.5□□□□□ -0.41
TPM1-213ENST00000558400 ZFYVE9O95405 1425 aa12.5□□□□□ -0.41
TPM1-213ENST00000558400 TMEM131LA2VDJ0 1609 aa12.49□□□□□ -0.41
TPM1-213ENST00000558400 NUTM2DQ5VT03 806 aaPredicted RBP12.48□□□□□ -0.41
TPM1-213ENST00000558400 TRPM2O94759 1503 aa12.47□□□□□ -0.41
TPM1-213ENST00000558400 CCDC144AA2RUR9 1427 aa12.46□□□□□ -0.41
TPM1-213ENST00000558400 PROSER2Q86WR7 435 aaPredicted RBP12.46□□□□□ -0.41
TPM1-213ENST00000558400 SPHKAPQ2M3C7 1700 aa12.45□□□□□ -0.42
TPM1-213ENST00000558400 PIK3R4Q99570 1358 aa12.45□□□□□ -0.42
TPM1-213ENST00000558400 RGL3Q3MIN7 710 aa12.43□□□□□ -0.42
TPM1-213ENST00000558400 ROBO1Q9Y6N7 1651 aa12.42□□□□□ -0.42
TPM1-213ENST00000558400 TRIM26Q12899 539 aaPredicted RBP12.42□□□□□ -0.42
TPM1-213ENST00000558400 CNKSR2Q8WXI2 1034 aa12.41□□□□□ -0.42
TPM1-213ENST00000558400 STAC3Q96MF2 364 aa12.41□□□□□ -0.42
TPM1-213ENST00000558400 AMOTL2Q9Y2J4 779 aa12.41□□□□□ -0.42
TPM1-213ENST00000558400 ANKRD30BQ9BXX2 1392 aa12.41□□□□□ -0.42
TPM1-213ENST00000558400 CLTCL1P53675 1640 aa12.4□□□□□ -0.42
TPM1-213ENST00000558400 FAM135BQ49AJ0 1406 aa12.4□□□□□ -0.42
TPM1-213ENST00000558400 ADAMTS13Q76LX8 1427 aa12.4□□□□□ -0.42
TPM1-213ENST00000558400 HOXD11P31277 338 aaPredicted RBP12.4□□□□□ -0.42
TPM1-213ENST00000558400 NCOA3Q9Y6Q9 1424 aa12.39□□□□□ -0.43
TPM1-213ENST00000558400 KIF1BO60333 1816 aa12.39□□□□□ -0.43
TPM1-213ENST00000558400 MYO5BQ9ULV0 1848 aa12.39□□□□□ -0.43
TPM1-213ENST00000558400 TMEM94Q12767 1356 aa12.38□□□□□ -0.43
TPM1-213ENST00000558400 SPATA31E1Q6ZUB1 1445 aa12.37□□□□□ -0.43
TPM1-213ENST00000558400 PHLPP1O60346 1717 aa12.37□□□□□ -0.43
TPM1-213ENST00000558400 UPF1Q92900 1129 aaKnown RBP eCLIP12.37□□□□□ -0.43
TPM1-213ENST00000558400 C19orf44Q9H6X5 657 aa12.37□□□□□ -0.43
TPM1-213ENST00000558400 NKTRP30414 1462 aaKnown RBP12.37□□□□□ -0.43
TPM1-213ENST00000558400 DIP2AQ14689 1571 aa12.37□□□□□ -0.43
TPM1-213ENST00000558400 C14orf37Q86TY3 774 aa12.36□□□□□ -0.43
TPM1-213ENST00000558400 NEXMIFQ5QGS0 1516 aa12.36□□□□□ -0.43
TPM1-213ENST00000558400 MSH6P52701 1360 aa12.35□□□□□ -0.43
TPM1-213ENST00000558400 SETBP1Q9Y6X0 1596 aa12.35□□□□□ -0.43
TPM1-213ENST00000558400 METP08581 1390 aa12.34□□□□□ -0.43
TPM1-213ENST00000558400 CADPS2Q86UW7 1296 aa12.34□□□□□ -0.43
TPM1-213ENST00000558400 RBM33Q96EV2 1170 aaKnown RBP12.34□□□□□ -0.43
TPM1-213ENST00000558400 ADGRF5Q8IZF2 1346 aa12.34□□□□□ -0.43
TPM1-213ENST00000558400 ATF3P18847 181 aa12.33□□□□□ -0.44
TPM1-213ENST00000558400 NWD1Q149M9 1564 aa12.32□□□□□ -0.44
TPM1-213ENST00000558400 DCAF8L1A6NGE4 600 aa12.32□□□□□ -0.44
TPM1-213ENST00000558400 C14orf93Q9H972 538 aaKnown RBP12.32□□□□□ -0.44
TPM1-213ENST00000558400 SLAIN2Q9P270 581 aa12.32□□□□□ -0.44
TPM1-213ENST00000558400 CHD2O14647 1828 aaKnown RBP12.32□□□□□ -0.44
TPM1-213ENST00000558400 PTPRUQ92729 1446 aa12.31□□□□□ -0.44
TPM1-213ENST00000558400 DCAF11Q8TEB1 546 aa12.31□□□□□ -0.44
TPM1-213ENST00000558400 COL16A1Q07092 1604 aaPredicted RBP12.3□□□□□ -0.44
TPM1-213ENST00000558400 SIRT1Q96EB6 747 aa12.3□□□□□ -0.44
TPM1-213ENST00000558400 KDM2AQ9Y2K7 1162 aa12.3□□□□□ -0.44
TPM1-213ENST00000558400 RNF216Q9NWF9 866 aaPredicted RBP12.29□□□□□ -0.44
TPM1-213ENST00000558400 JCADQ9P266 1359 aa12.29□□□□□ -0.44
TPM1-213ENST00000558400 LRP6O75581 1613 aa12.28□□□□□ -0.44
TPM1-213ENST00000558400 CDK12Q9NYV4 1490 aaPredicted RBP12.27□□□□□ -0.44
TPM1-213ENST00000558400 NRXN3Q9Y4C0 1643 aa12.27□□□□□ -0.44
TPM1-213ENST00000558400 SHPRHQ149N8 1683 aa12.27□□□□□ -0.45
TPM1-213ENST00000558400 CFAP70Q5T0N1 1121 aa12.27□□□□□ -0.45
TPM1-213ENST00000558400 TMEM132EQ6IEE7 984 aa12.27□□□□□ -0.45
TPM1-213ENST00000558400 DHX57Q6P158 1386 aaKnown RBP12.27□□□□□ -0.45
TPM1-213ENST00000558400 ABCC11Q96J66 1382 aa12.27□□□□□ -0.45
TPM1-213ENST00000558400 PPLO60437 1756 aa12.26□□□□□ -0.45
TPM1-213ENST00000558400 STK26Q9P289 416 aa12.26□□□□□ -0.45
TPM1-213ENST00000558400 LRPPRCP42704 1394 aaKnown RBP12.26□□□□□ -0.45
TPM1-213ENST00000558400 PIK3C2GO75747 1445 aa12.26□□□□□ -0.45
TPM1-213ENST00000558400 DCCP43146 1447 aa12.25□□□□□ -0.45
TPM1-213ENST00000558400 PTCH1Q13635 1447 aa12.25□□□□□ -0.45
TPM1-213ENST00000558400 PRAG1Q86YV5 1406 aa12.25□□□□□ -0.45
TPM1-213ENST00000558400 MYOM2P54296 1465 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms