RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 SYNMO15061 1565 aa23.34■■□□□ 1.33
LDLR-206ENST00000557958 PREX1Q8TCU6 1659 aa23.33■■□□□ 1.33
LDLR-206ENST00000557958 KIF1BO60333 1816 aa23.31■■□□□ 1.32
LDLR-206ENST00000557958 NUTM2DQ5VT03 806 aaPredicted RBP23.31■■□□□ 1.32
LDLR-206ENST00000557958 MADDQ8WXG6 1647 aa23.29■■□□□ 1.32
LDLR-206ENST00000557958 ST20-MTHFSA0A0A6YYL1 179 aa23.28■■□□□ 1.32
LDLR-206ENST00000557958 SENP3Q9H4L4 574 aaPredicted RBP23.28■■□□□ 1.32
LDLR-206ENST00000557958 MROH2AA6NES4 1674 aa23.26■■□□□ 1.31
LDLR-206ENST00000557958 FER1L4A9Z1Z3 1794 aa23.26■■□□□ 1.31
LDLR-206ENST00000557958 MYOM2P54296 1465 aa23.25■■□□□ 1.31
LDLR-206ENST00000557958 NBPF1Q3BBV0 1214 aa23.24■■□□□ 1.31
LDLR-206ENST00000557958 TNRQ92752 1358 aa23.24■■□□□ 1.31
LDLR-206ENST00000557958 PIK3C2BO00750 1634 aa23.24■■□□□ 1.31
LDLR-206ENST00000557958 ADGRB3O60242 1522 aa23.24■■□□□ 1.31
LDLR-206ENST00000557958 SPATA31D1Q6ZQQ2 1576 aa23.24■■□□□ 1.31
LDLR-206ENST00000557958 ADGRF5Q8IZF2 1346 aa23.24■■□□□ 1.31
LDLR-206ENST00000557958 RPGRIP1LQ68CZ1 1315 aa23.2■■□□□ 1.3
LDLR-206ENST00000557958 KIAA1210Q9ULL0 1709 aa23.2■■□□□ 1.3
LDLR-206ENST00000557958 POLR3GLQ9BT43 218 aa23.19■■□□□ 1.3
LDLR-206ENST00000557958 VGFO15240 615 aaPredicted RBP23.17■■□□□ 1.3
LDLR-206ENST00000557958 C3P01024 1663 aa23.17■■□□□ 1.3
LDLR-206ENST00000557958 RIMS1Q86UR5 1692 aaKnown RBP23.16■■□□□ 1.3
LDLR-206ENST00000557958 CFAP70Q5T0N1 1121 aa23.16■■□□□ 1.3
LDLR-206ENST00000557958 IFT172Q9UG01 1749 aa23.16■■□□□ 1.3
LDLR-206ENST00000557958 PRKRIP1Q9H875 184 aaPredicted RBP23.15■■□□□ 1.3
LDLR-206ENST00000557958 EIF3AQ14152 1382 aaKnown RBP23.15■■□□□ 1.3
LDLR-206ENST00000557958 TMEM131LA2VDJ0 1609 aa23.15■■□□□ 1.3
LDLR-206ENST00000557958 SCAF11Q99590 1463 aaKnown RBP23.15■■□□□ 1.3
LDLR-206ENST00000557958 IQGAP1P46940 1657 aa23.13■■□□□ 1.29
LDLR-206ENST00000557958 MYO5BQ9ULV0 1848 aa23.13■■□□□ 1.29
LDLR-206ENST00000557958 NRXN1Q9ULB1 1477 aa23.12■■□□□ 1.29
LDLR-206ENST00000557958 TMF1P82094 1093 aa23.12■■□□□ 1.29
LDLR-206ENST00000557958 A2ML1A8K2U0 1454 aa23.11■■□□□ 1.29
LDLR-206ENST00000557958 ADAMTSL3P82987 1691 aa23.11■■□□□ 1.29
LDLR-206ENST00000557958 SLC24A1O60721 1099 aa23.1■■□□□ 1.29
LDLR-206ENST00000557958 TESK2Q96S53 571 aa23.1■■□□□ 1.29
LDLR-206ENST00000557958 PPLO60437 1756 aa23.09■■□□□ 1.29
LDLR-206ENST00000557958 NEXMIFQ5QGS0 1516 aa23.09■■□□□ 1.29
LDLR-206ENST00000557958 GTF3C3Q9Y5Q9 886 aa23.09■■□□□ 1.29
LDLR-206ENST00000557958 BCANQ96GW7 911 aa23.07■■□□□ 1.28
LDLR-206ENST00000557958 CDCA8Q53HL2 280 aa23.07■■□□□ 1.28
LDLR-206ENST00000557958 RIMS2Q9UQ26 1411 aa23.07■■□□□ 1.28
LDLR-206ENST00000557958 TMEM132EQ6IEE7 984 aa23.06■■□□□ 1.28
LDLR-206ENST00000557958 NLRP1Q9C000 1473 aa23.05■■□□□ 1.28
LDLR-206ENST00000557958 KTN1Q86UP2 1357 aaKnown RBP23.05■■□□□ 1.28
LDLR-206ENST00000557958 HDGFP51858 240 aaKnown RBP23.05■■□□□ 1.28
LDLR-206ENST00000557958 C14orf93Q9H972 538 aaKnown RBP23.05■■□□□ 1.28
LDLR-206ENST00000557958 SETBP1Q9Y6X0 1596 aa23.04■■□□□ 1.28
LDLR-206ENST00000557958 PIK3C2GO75747 1445 aa23.03■■□□□ 1.28
LDLR-206ENST00000557958 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.03■■□□□ 1.28
LDLR-206ENST00000557958 DISP3Q9P2K9 1392 aa23.03■■□□□ 1.28
LDLR-206ENST00000557958 THEMISQ8N1K5 641 aaPredicted RBP23■■□□□ 1.27
LDLR-206ENST00000557958 TXNDC2Q86VQ3 553 aa23■■□□□ 1.27
LDLR-206ENST00000557958 TMEM2Q9UHN6 1383 aa23■■□□□ 1.27
LDLR-206ENST00000557958 PTPRMP28827 1452 aa22.99■■□□□ 1.27
LDLR-206ENST00000557958 MRS2Q9HD23 443 aa22.99■■□□□ 1.27
LDLR-206ENST00000557958 ZFYVE9O95405 1425 aa22.99■■□□□ 1.27
LDLR-206ENST00000557958 UBR1Q8IWV7 1749 aa22.98■■□□□ 1.27
LDLR-206ENST00000557958 TRAK1Q9UPV9 953 aa22.98■■□□□ 1.27
LDLR-206ENST00000557958 EID1Q9Y6B2 187 aa22.98■■□□□ 1.27
LDLR-206ENST00000557958 STK26Q9P289 416 aa22.97■■□□□ 1.27
LDLR-206ENST00000557958 LTKP29376 864 aa22.96■■□□□ 1.27
LDLR-206ENST00000557958 RALBP1Q15311 655 aa22.96■■□□□ 1.27
LDLR-206ENST00000557958 MYO3AQ8NEV4 1616 aa22.95■■□□□ 1.26
LDLR-206ENST00000557958 SBNO2Q9Y2G9 1366 aa22.93■■□□□ 1.26
LDLR-206ENST00000557958 KDM4FA0A1W2PPD8 638 aa22.92■■□□□ 1.26
LDLR-206ENST00000557958 ADGRB1O14514 1584 aa22.9■■□□□ 1.26
LDLR-206ENST00000557958 CEP170BQ9Y4F5 1589 aaPredicted RBP22.9■■□□□ 1.26
LDLR-206ENST00000557958 KDM5AP29375 1690 aaKnown RBP22.9■■□□□ 1.26
LDLR-206ENST00000557958 MYBBP1AQ9BQG0 1328 aaKnown RBP22.89■■□□□ 1.25
LDLR-206ENST00000557958 CENPJQ9HC77 1338 aaPredicted RBP22.88■■□□□ 1.25
LDLR-206ENST00000557958 HNRNPUQ00839 825 aaKnown RBP eCLIP22.88■■□□□ 1.25
LDLR-206ENST00000557958 ALKQ9UM73 1620 aa22.87■■□□□ 1.25
LDLR-206ENST00000557958 SAFB2Q14151 953 aaKnown RBP eCLIP22.87■■□□□ 1.25
LDLR-206ENST00000557958 CCDC184Q52MB2 194 aa22.87■■□□□ 1.25
LDLR-206ENST00000557958 SLC26A8Q96RN1 970 aa22.87■■□□□ 1.25
LDLR-206ENST00000557958 PANK3Q9H999 370 aa22.87■■□□□ 1.25
LDLR-206ENST00000557958 PER1O15534 1290 aaPredicted RBP22.86■■□□□ 1.25
LDLR-206ENST00000557958 BRD4O60885 1362 aaPredicted RBP22.85■■□□□ 1.25
LDLR-206ENST00000557958 CNGB1Q14028 1251 aaPredicted RBP22.85■■□□□ 1.25
LDLR-206ENST00000557958 FAM9BQ8IZU0 186 aa22.85■■□□□ 1.25
LDLR-206ENST00000557958 PARD3Q8TEW0 1356 aa22.84■■□□□ 1.25
LDLR-206ENST00000557958 ANKLE2Q86XL3 938 aa22.84■■□□□ 1.25
LDLR-206ENST00000557958 SETD1BQ9UPS6 1966 aaKnown RBP22.84■■□□□ 1.25
LDLR-206ENST00000557958 TMC1Q8TDI8 760 aa22.83■■□□□ 1.25
LDLR-206ENST00000557958 SLIT1O75093 1534 aa22.83■■□□□ 1.24
LDLR-206ENST00000557958 PLEKHG1Q9ULL1 1385 aa22.83■■□□□ 1.24
LDLR-206ENST00000557958 ARHGAP23Q9P227 1491 aa22.82■■□□□ 1.24
LDLR-206ENST00000557958 POGKQ9P215 609 aa22.81■■□□□ 1.24
LDLR-206ENST00000557958 METP08581 1390 aa22.81■■□□□ 1.24
LDLR-206ENST00000557958 YTHDC2Q9H6S0 1430 aaKnown RBP22.81■■□□□ 1.24
LDLR-206ENST00000557958 KNSTRNQ9Y448 316 aa22.81■■□□□ 1.24
LDLR-206ENST00000557958 NLRP13Q86W25 1043 aa22.8■■□□□ 1.24
LDLR-206ENST00000557958 ASXL1Q8IXJ9 1541 aa22.8■■□□□ 1.24
LDLR-206ENST00000557958 PRAM1Q96QH2 718 aa22.79■■□□□ 1.24
LDLR-206ENST00000557958 QRICH2Q9H0J4 1663 aa22.79■■□□□ 1.24
LDLR-206ENST00000557958 NRXN3Q9Y4C0 1643 aa22.77■■□□□ 1.24
LDLR-206ENST00000557958 MYOM1P52179 1685 aa22.77■■□□□ 1.24
LDLR-206ENST00000557958 WAPLQ7Z5K2 1190 aa22.76■■□□□ 1.23
LDLR-206ENST00000557958 ZNF142P52746 1687 aaPredicted RBP22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms