RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 NCKAP5LQ9HCH0 1330 aa30.86■■■□□ 2.53
CASC4-204ENST00000557945 NUTM2DQ5VT03 806 aaPredicted RBP30.85■■■□□ 2.53
CASC4-204ENST00000557945 CLSPNQ9HAW4 1339 aa30.84■■■□□ 2.53
CASC4-204ENST00000557945 PPP1R15AO75807 674 aaPredicted RBP30.83■■■□□ 2.53
CASC4-204ENST00000557945 LTKP29376 864 aa30.82■■■□□ 2.52
CASC4-204ENST00000557945 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.82■■■□□ 2.52
CASC4-204ENST00000557945 RPGRIP1LQ68CZ1 1315 aa30.82■■■□□ 2.52
CASC4-204ENST00000557945 NEURL4Q96JN8 1562 aa30.81■■■□□ 2.52
CASC4-204ENST00000557945 ZFYVE9O95405 1425 aa30.81■■■□□ 2.52
CASC4-204ENST00000557945 SCAF11Q99590 1463 aaKnown RBP30.8■■■□□ 2.52
CASC4-204ENST00000557945 NEXMIFQ5QGS0 1516 aa30.78■■■□□ 2.52
CASC4-204ENST00000557945 SENP3Q9H4L4 574 aaPredicted RBP30.76■■■□□ 2.51
CASC4-204ENST00000557945 BCANQ96GW7 911 aa30.75■■■□□ 2.51
CASC4-204ENST00000557945 POLR1AO95602 1720 aaPredicted RBP30.75■■■□□ 2.51
CASC4-204ENST00000557945 VGFO15240 615 aaPredicted RBP30.74■■■□□ 2.51
CASC4-204ENST00000557945 STRCQ7RTU9 1775 aa30.74■■■□□ 2.51
CASC4-204ENST00000557945 DCAF11Q8TEB1 546 aa30.74■■■□□ 2.51
CASC4-204ENST00000557945 KDM2AQ9Y2K7 1162 aa30.73■■■□□ 2.51
CASC4-204ENST00000557945 NPHP4O75161 1426 aaPredicted RBP30.71■■■□□ 2.51
CASC4-204ENST00000557945 PPLO60437 1756 aa30.71■■■□□ 2.51
CASC4-204ENST00000557945 TONSLQ96HA7 1378 aa30.7■■■□□ 2.51
CASC4-204ENST00000557945 L3MBTL2Q969R5 705 aa30.69■■■□□ 2.5
CASC4-204ENST00000557945 DMRT2Q9Y5R5 561 aa30.68■■■□□ 2.5
CASC4-204ENST00000557945 PLEKHG1Q9ULL1 1385 aa30.68■■■□□ 2.5
CASC4-204ENST00000557945 MED14O60244 1454 aa30.68■■■□□ 2.5
CASC4-204ENST00000557945 ADGRF5Q8IZF2 1346 aa30.67■■■□□ 2.5
CASC4-204ENST00000557945 IFT172Q9UG01 1749 aa30.66■■■□□ 2.5
CASC4-204ENST00000557945 IQGAP1P46940 1657 aa30.63■■■□□ 2.49
CASC4-204ENST00000557945 STAC3Q96MF2 364 aa30.63■■■□□ 2.49
CASC4-204ENST00000557945 MYOM2P54296 1465 aa30.63■■■□□ 2.49
CASC4-204ENST00000557945 SLC26A8Q96RN1 970 aa30.62■■■□□ 2.49
CASC4-204ENST00000557945 SETBP1Q9Y6X0 1596 aa30.55■■■□□ 2.48
CASC4-204ENST00000557945 ADAMTS13Q76LX8 1427 aa30.55■■■□□ 2.48
CASC4-204ENST00000557945 NRXN1Q9ULB1 1477 aa30.55■■■□□ 2.48
CASC4-204ENST00000557945 PIK3C2GO75747 1445 aa30.54■■■□□ 2.48
CASC4-204ENST00000557945 TIMELESSQ9UNS1 1208 aa30.54■■■□□ 2.48
CASC4-204ENST00000557945 TBX22Q9Y458 520 aa30.54■■■□□ 2.48
CASC4-204ENST00000557945 NRXN3Q9Y4C0 1643 aa30.52■■■□□ 2.48
CASC4-204ENST00000557945 PRAG1Q86YV5 1406 aa30.49■■■□□ 2.47
CASC4-204ENST00000557945 CFAP70Q5T0N1 1121 aa30.49■■■□□ 2.47
CASC4-204ENST00000557945 ALKQ9UM73 1620 aa30.48■■■□□ 2.47
CASC4-204ENST00000557945 DIP2AQ14689 1571 aa30.48■■■□□ 2.47
CASC4-204ENST00000557945 C14orf93Q9H972 538 aaKnown RBP30.47■■■□□ 2.47
CASC4-204ENST00000557945 METP08581 1390 aa30.44■■■□□ 2.46
CASC4-204ENST00000557945 ZNF335Q9H4Z2 1342 aaPredicted RBP30.42■■■□□ 2.46
CASC4-204ENST00000557945 NBPF8Q3BBV2 869 aa30.41■■■□□ 2.46
CASC4-204ENST00000557945 TMEM132EQ6IEE7 984 aa30.41■■■□□ 2.46
CASC4-204ENST00000557945 LAMC1P11047 1609 aa30.4■■■□□ 2.46
CASC4-204ENST00000557945 PIK3R4Q99570 1358 aa30.4■■■□□ 2.46
CASC4-204ENST00000557945 SETD1AO15047 1707 aaKnown RBP30.39■■■□□ 2.46
CASC4-204ENST00000557945 KCNA6P17658 529 aa30.38■■■□□ 2.45
CASC4-204ENST00000557945 AMOTL2Q9Y2J4 779 aa30.36■■■□□ 2.45
CASC4-204ENST00000557945 PTPRUQ92729 1446 aa30.34■■■□□ 2.45
CASC4-204ENST00000557945 NBPF1Q3BBV0 1214 aa30.34■■■□□ 2.45
CASC4-204ENST00000557945 STK26Q9P289 416 aa30.34■■■□□ 2.45
CASC4-204ENST00000557945 ASXL1Q8IXJ9 1541 aa30.33■■■□□ 2.45
CASC4-204ENST00000557945 KIAA1210Q9ULL0 1709 aa30.32■■■□□ 2.44
CASC4-204ENST00000557945 CHD2O14647 1828 aaKnown RBP30.31■■■□□ 2.44
CASC4-204ENST00000557945 ROCK2O75116 1388 aaKnown RBP30.3■■■□□ 2.44
CASC4-204ENST00000557945 TRPM1Q7Z4N2 1603 aa30.3■■■□□ 2.44
CASC4-204ENST00000557945 LRPPRCP42704 1394 aaKnown RBP30.29■■■□□ 2.44
CASC4-204ENST00000557945 YTHDC2Q9H6S0 1430 aaKnown RBP30.29■■■□□ 2.44
CASC4-204ENST00000557945 ADGRB1O14514 1584 aa30.29■■■□□ 2.44
CASC4-204ENST00000557945 NWD1Q149M9 1564 aa30.28■■■□□ 2.44
CASC4-204ENST00000557945 STRCP1A6NGW2 1772 aa30.27■■■□□ 2.44
CASC4-204ENST00000557945 RALGAPBQ86X10 1494 aa30.26■■■□□ 2.43
CASC4-204ENST00000557945 PROSER2Q86WR7 435 aaPredicted RBP30.25■■■□□ 2.43
CASC4-204ENST00000557945 TRAK1Q9UPV9 953 aa30.25■■■□□ 2.43
CASC4-204ENST00000557945 XRN1Q8IZH2 1706 aaKnown RBP30.24■■■□□ 2.43
CASC4-204ENST00000557945 NKTRP30414 1462 aaKnown RBP30.23■■■□□ 2.43
CASC4-204ENST00000557945 ABCC11Q96J66 1382 aa30.23■■■□□ 2.43
CASC4-204ENST00000557945 LTBP4Q8N2S1 1624 aa30.23■■■□□ 2.43
CASC4-204ENST00000557945 CPS1P31327 1500 aa30.23■■■□□ 2.43
CASC4-204ENST00000557945 CARD11Q9BXL7 1154 aa30.22■■■□□ 2.43
CASC4-204ENST00000557945 RBM33Q96EV2 1170 aaKnown RBP30.21■■■□□ 2.43
CASC4-204ENST00000557945 ROBO2Q9HCK4 1378 aa30.2■■■□□ 2.42
CASC4-204ENST00000557945 TECPR2O15040 1411 aa30.18■■■□□ 2.42
CASC4-204ENST00000557945 PTCH1Q13635 1447 aa30.18■■■□□ 2.42
CASC4-204ENST00000557945 GPRASP1Q5JY77 1395 aa30.18■■■□□ 2.42
CASC4-204ENST00000557945 LRRC7Q96NW7 1537 aa30.17■■■□□ 2.42
CASC4-204ENST00000557945 KNDC1Q76NI1 1749 aa30.16■■■□□ 2.42
CASC4-204ENST00000557945 WAPLQ7Z5K2 1190 aa30.15■■■□□ 2.42
CASC4-204ENST00000557945 TMEM94Q12767 1356 aa30.15■■■□□ 2.42
CASC4-204ENST00000557945 C14orf37Q86TY3 774 aa30.15■■■□□ 2.42
CASC4-204ENST00000557945 PRAM1Q96QH2 718 aa30.15■■■□□ 2.42
CASC4-204ENST00000557945 POGKQ9P215 609 aa30.15■■■□□ 2.42
CASC4-204ENST00000557945 SIRT1Q96EB6 747 aa30.14■■■□□ 2.41
CASC4-204ENST00000557945 ZEB1P37275 1124 aaPredicted RBP30.13■■■□□ 2.41
CASC4-204ENST00000557945 DLC1Q96QB1 1528 aa30.13■■■□□ 2.41
CASC4-204ENST00000557945 SAFB2Q14151 953 aaKnown RBP eCLIP30.12■■■□□ 2.41
CASC4-204ENST00000557945 PLEKHH1Q9ULM0 1364 aa30.11■■■□□ 2.41
CASC4-204ENST00000557945 FAM135BQ49AJ0 1406 aa30.11■■■□□ 2.41
CASC4-204ENST00000557945 CERKQ8TCT0 537 aa30.08■■■□□ 2.41
CASC4-204ENST00000557945 EIF3AQ14152 1382 aaKnown RBP30.07■■■□□ 2.4
CASC4-204ENST00000557945 ARHGEF28Q8N1W1 1705 aaKnown RBP30.07■■■□□ 2.4
CASC4-204ENST00000557945 NCOA3Q9Y6Q9 1424 aa30.05■■■□□ 2.4
CASC4-204ENST00000557945 CENPJQ9HC77 1338 aaPredicted RBP30.04■■■□□ 2.4
CASC4-204ENST00000557945 MSH6P52701 1360 aa30.03■■■□□ 2.4
CASC4-204ENST00000557945 XIRP1Q702N8 1843 aaKnown RBP30.02■■■□□ 2.4
CASC4-204ENST00000557945 USP47Q96K76 1375 aa30.02■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms