RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 UBR1Q8IWV7 1749 aa14.1□□□□□ -0.15
TMEM260-213ENST00000556929 TMEM131LA2VDJ0 1609 aa14.09□□□□□ -0.15
TMEM260-213ENST00000556929 CHGAP10645 457 aaKnown RBP14.09□□□□□ -0.15
TMEM260-213ENST00000556929 ADGRB3O60242 1522 aa14.09□□□□□ -0.15
TMEM260-213ENST00000556929 UHRF1BP1Q6BDS2 1440 aa14.08□□□□□ -0.15
TMEM260-213ENST00000556929 CEP170BQ9Y4F5 1589 aaPredicted RBP14.08□□□□□ -0.16
TMEM260-213ENST00000556929 A2ML1A8K2U0 1454 aa14.07□□□□□ -0.16
TMEM260-213ENST00000556929 TONSLQ96HA7 1378 aa14.06□□□□□ -0.16
TMEM260-213ENST00000556929 ZNF326Q5BKZ1 582 aaKnown RBP14.05□□□□□ -0.16
TMEM260-213ENST00000556929 TIMELESSQ9UNS1 1208 aa14.05□□□□□ -0.16
TMEM260-213ENST00000556929 SPATA31E1Q6ZUB1 1445 aa14.05□□□□□ -0.16
TMEM260-213ENST00000556929 IFT172Q9UG01 1749 aa14.04□□□□□ -0.16
TMEM260-213ENST00000556929 PPLO60437 1756 aa14.04□□□□□ -0.16
TMEM260-213ENST00000556929 RGL3Q3MIN7 710 aa14.04□□□□□ -0.16
TMEM260-213ENST00000556929 THEMISQ8N1K5 641 aaPredicted RBP14.03□□□□□ -0.16
TMEM260-213ENST00000556929 RPGRIP1LQ68CZ1 1315 aa14.02□□□□□ -0.17
TMEM260-213ENST00000556929 HDGFP51858 240 aaKnown RBP14.02□□□□□ -0.17
TMEM260-213ENST00000556929 ZEB1P37275 1124 aaPredicted RBP14□□□□□ -0.17
TMEM260-213ENST00000556929 STAC3Q96MF2 364 aa14□□□□□ -0.17
TMEM260-213ENST00000556929 NEXMIFQ5QGS0 1516 aa14□□□□□ -0.17
TMEM260-213ENST00000556929 C1QBPQ07021 282 aaKnown RBP13.99□□□□□ -0.17
TMEM260-213ENST00000556929 L3MBTL2Q969R5 705 aa13.99□□□□□ -0.17
TMEM260-213ENST00000556929 SLIT1O75093 1534 aa13.99□□□□□ -0.17
TMEM260-213ENST00000556929 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.98□□□□□ -0.17
TMEM260-213ENST00000556929 DCAF11Q8TEB1 546 aa13.98□□□□□ -0.17
TMEM260-213ENST00000556929 POLR1AO95602 1720 aaPredicted RBP13.98□□□□□ -0.17
TMEM260-213ENST00000556929 RIMS2Q9UQ26 1411 aa13.98□□□□□ -0.17
TMEM260-213ENST00000556929 TMEM2Q9UHN6 1383 aa13.97□□□□□ -0.17
TMEM260-213ENST00000556929 EID1Q9Y6B2 187 aa13.97□□□□□ -0.17
TMEM260-213ENST00000556929 ARHGAP23Q9P227 1491 aa13.97□□□□□ -0.17
TMEM260-213ENST00000556929 MYOM2P54296 1465 aa13.96□□□□□ -0.17
TMEM260-213ENST00000556929 LMTK3Q96Q04 1460 aa13.96□□□□□ -0.17
TMEM260-213ENST00000556929 VGFO15240 615 aaPredicted RBP13.96□□□□□ -0.17
TMEM260-213ENST00000556929 PPP1R15AO75807 674 aaPredicted RBP13.95□□□□□ -0.18
TMEM260-213ENST00000556929 KDM2AQ9Y2K7 1162 aa13.95□□□□□ -0.18
TMEM260-213ENST00000556929 ZFYVE9O95405 1425 aa13.95□□□□□ -0.18
TMEM260-213ENST00000556929 TXNDC2Q86VQ3 553 aa13.94□□□□□ -0.18
TMEM260-213ENST00000556929 ANKLE2Q86XL3 938 aa13.93□□□□□ -0.18
TMEM260-213ENST00000556929 NUTM2DQ5VT03 806 aaPredicted RBP13.92□□□□□ -0.18
TMEM260-213ENST00000556929 KIAA1210Q9ULL0 1709 aa13.92□□□□□ -0.18
TMEM260-213ENST00000556929 SCAF11Q99590 1463 aaKnown RBP13.92□□□□□ -0.18
TMEM260-213ENST00000556929 LAMC1P11047 1609 aa13.91□□□□□ -0.18
TMEM260-213ENST00000556929 NRXN1Q9ULB1 1477 aa13.91□□□□□ -0.18
TMEM260-213ENST00000556929 BCANQ96GW7 911 aa13.9□□□□□ -0.18
TMEM260-213ENST00000556929 IQGAP1P46940 1657 aa13.9□□□□□ -0.18
TMEM260-213ENST00000556929 TRPM1Q7Z4N2 1603 aa13.9□□□□□ -0.19
TMEM260-213ENST00000556929 PRAG1Q86YV5 1406 aa13.9□□□□□ -0.19
TMEM260-213ENST00000556929 ADGRF5Q8IZF2 1346 aa13.9□□□□□ -0.19
TMEM260-213ENST00000556929 PLEKHG1Q9ULL1 1385 aa13.89□□□□□ -0.19
TMEM260-213ENST00000556929 LTKP29376 864 aa13.89□□□□□ -0.19
TMEM260-213ENST00000556929 HSPA2P54652 639 aa13.89□□□□□ -0.19
TMEM260-213ENST00000556929 PIK3C2GO75747 1445 aa13.89□□□□□ -0.19
TMEM260-213ENST00000556929 SETBP1Q9Y6X0 1596 aa13.88□□□□□ -0.19
TMEM260-213ENST00000556929 STRCQ7RTU9 1775 aa13.88□□□□□ -0.19
TMEM260-213ENST00000556929 MED14O60244 1454 aa13.87□□□□□ -0.19
TMEM260-213ENST00000556929 NRXN3Q9Y4C0 1643 aa13.87□□□□□ -0.19
TMEM260-213ENST00000556929 NBPF8Q3BBV2 869 aa13.86□□□□□ -0.19
TMEM260-213ENST00000556929 NPHP4O75161 1426 aaPredicted RBP13.86□□□□□ -0.19
TMEM260-213ENST00000556929 DIP2AQ14689 1571 aa13.86□□□□□ -0.19
TMEM260-213ENST00000556929 NCKAP5LQ9HCH0 1330 aa13.86□□□□□ -0.19
TMEM260-213ENST00000556929 ALKQ9UM73 1620 aa13.86□□□□□ -0.19
TMEM260-213ENST00000556929 SETD1AO15047 1707 aaKnown RBP13.85□□□□□ -0.19
TMEM260-213ENST00000556929 C14orf93Q9H972 538 aaKnown RBP13.85□□□□□ -0.19
TMEM260-213ENST00000556929 RALGAPBQ86X10 1494 aa13.84□□□□□ -0.19
TMEM260-213ENST00000556929 CFAP70Q5T0N1 1121 aa13.83□□□□□ -0.2
TMEM260-213ENST00000556929 TBX22Q9Y458 520 aa13.82□□□□□ -0.2
TMEM260-213ENST00000556929 ROCK2O75116 1388 aaKnown RBP13.82□□□□□ -0.2
TMEM260-213ENST00000556929 ADAMTS13Q76LX8 1427 aa13.81□□□□□ -0.2
TMEM260-213ENST00000556929 CHD2O14647 1828 aaKnown RBP13.8□□□□□ -0.2
TMEM260-213ENST00000556929 SLC26A8Q96RN1 970 aa13.8□□□□□ -0.2
TMEM260-213ENST00000556929 KNDC1Q76NI1 1749 aa13.78□□□□□ -0.2
TMEM260-213ENST00000556929 NBPF1Q3BBV0 1214 aa13.78□□□□□ -0.2
TMEM260-213ENST00000556929 CARD11Q9BXL7 1154 aa13.78□□□□□ -0.2
TMEM260-213ENST00000556929 U3KPZ7 1027 aaPredicted RBP13.78□□□□□ -0.2
TMEM260-213ENST00000556929 GPRASP1Q5JY77 1395 aa13.78□□□□□ -0.2
TMEM260-213ENST00000556929 PIK3R4Q99570 1358 aa13.78□□□□□ -0.2
TMEM260-213ENST00000556929 ADGRB1O14514 1584 aa13.78□□□□□ -0.2
TMEM260-213ENST00000556929 TMEM132EQ6IEE7 984 aa13.77□□□□□ -0.21
TMEM260-213ENST00000556929 ASXL1Q8IXJ9 1541 aa13.77□□□□□ -0.21
TMEM260-213ENST00000556929 METP08581 1390 aa13.76□□□□□ -0.21
TMEM260-213ENST00000556929 SLC4A2P04920 1241 aa13.76□□□□□ -0.21
TMEM260-213ENST00000556929 YTHDC2Q9H6S0 1430 aaKnown RBP13.75□□□□□ -0.21
TMEM260-213ENST00000556929 ARHGEF28Q8N1W1 1705 aaKnown RBP13.75□□□□□ -0.21
TMEM260-213ENST00000556929 XRN1Q8IZH2 1706 aaKnown RBP13.73□□□□□ -0.21
TMEM260-213ENST00000556929 LRPPRCP42704 1394 aaKnown RBP13.73□□□□□ -0.21
TMEM260-213ENST00000556929 EIF3AQ14152 1382 aaKnown RBP13.73□□□□□ -0.21
TMEM260-213ENST00000556929 NWD1Q149M9 1564 aa13.73□□□□□ -0.21
TMEM260-213ENST00000556929 DLC1Q96QB1 1528 aa13.73□□□□□ -0.21
TMEM260-213ENST00000556929 ABCC11Q96J66 1382 aa13.72□□□□□ -0.21
TMEM260-213ENST00000556929 STK26Q9P289 416 aa13.72□□□□□ -0.21
TMEM260-213ENST00000556929 TRAK1Q9UPV9 953 aa13.72□□□□□ -0.21
TMEM260-213ENST00000556929 AMOTL2Q9Y2J4 779 aa13.72□□□□□ -0.21
TMEM260-213ENST00000556929 CPS1P31327 1500 aa13.72□□□□□ -0.21
TMEM260-213ENST00000556929 PTPRUQ92729 1446 aa13.72□□□□□ -0.21
TMEM260-213ENST00000556929 KCNA6P17658 529 aa13.71□□□□□ -0.21
TMEM260-213ENST00000556929 EIF4G2P78344 907 aaKnown RBP eCLIP13.71□□□□□ -0.21
TMEM260-213ENST00000556929 TECPR2O15040 1411 aa13.71□□□□□ -0.22
TMEM260-213ENST00000556929 STRCP1A6NGW2 1772 aa13.71□□□□□ -0.22
TMEM260-213ENST00000556929 USP47Q96K76 1375 aa13.71□□□□□ -0.22
TMEM260-213ENST00000556929 SIRT1Q96EB6 747 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms