RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	PPP1R15A	O75807	674 aa	Predicted RBP	19.67	■□□□□ 0.74
SHMT2-223	ENST00000556689	FAM50A	Q14320	339 aa	Known RBP	19.66	■□□□□ 0.74
SHMT2-223	ENST00000556689	NKTR	P30414	1462 aa	Known RBP	19.65	■□□□□ 0.74
SHMT2-223	ENST00000556689	ADGRB3	O60242	1522 aa		19.65	■□□□□ 0.74
SHMT2-223	ENST00000556689	TBX22	Q9Y458	520 aa		19.64	■□□□□ 0.73
SHMT2-223	ENST00000556689	ROBO1	Q9Y6N7	1651 aa		19.64	■□□□□ 0.73
SHMT2-223	ENST00000556689	RPRD2	Q5VT52	1461 aa	Known RBP	19.63	■□□□□ 0.73
SHMT2-223	ENST00000556689	ANKRD50	Q9ULJ7	1429 aa		19.63	■□□□□ 0.73
SHMT2-223	ENST00000556689	PLEKHG1	Q9ULL1	1385 aa		19.63	■□□□□ 0.73
SHMT2-223	ENST00000556689	ADGRL2	O95490	1459 aa		19.62	■□□□□ 0.73
SHMT2-223	ENST00000556689	CHGA	P10645	457 aa	Known RBP	19.62	■□□□□ 0.73
SHMT2-223	ENST00000556689	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	19.62	■□□□□ 0.73
SHMT2-223	ENST00000556689	JCAD	Q9P266	1359 aa		19.61	■□□□□ 0.73
SHMT2-223	ENST00000556689	ZFYVE9	O95405	1425 aa		19.6	■□□□□ 0.73
SHMT2-223	ENST00000556689	RIMS2	Q9UQ26	1411 aa		19.6	■□□□□ 0.73
SHMT2-223	ENST00000556689	NWD1	Q149M9	1564 aa		19.6	■□□□□ 0.73
SHMT2-223	ENST00000556689	C14orf37	Q86TY3	774 aa		19.59	■□□□□ 0.73
SHMT2-223	ENST00000556689	NCOA3	Q9Y6Q9	1424 aa		19.58	■□□□□ 0.72
SHMT2-223	ENST00000556689	NUTM2D	Q5VT03	806 aa	Predicted RBP	19.56	■□□□□ 0.72
SHMT2-223	ENST00000556689	CADPS2	Q86UW7	1296 aa		19.56	■□□□□ 0.72
SHMT2-223	ENST00000556689	C19orf44	Q9H6X5	657 aa		19.56	■□□□□ 0.72
SHMT2-223	ENST00000556689	ATF3	P18847	181 aa		19.55	■□□□□ 0.72
SHMT2-223	ENST00000556689	SPATA31A6	Q5VVP1	1343 aa		19.53	■□□□□ 0.72
SHMT2-223	ENST00000556689	MEX3C	Q5U5Q3	659 aa	Known RBP	19.53	■□□□□ 0.72
SHMT2-223	ENST00000556689	PHLPP1	O60346	1717 aa		19.52	■□□□□ 0.72
SHMT2-223	ENST00000556689	TMEM131L	A2VDJ0	1609 aa		19.51	■□□□□ 0.71
SHMT2-223	ENST00000556689	CHD2	O14647	1828 aa	Known RBP	19.51	■□□□□ 0.71
SHMT2-223	ENST00000556689	ZNF772	Q68DY9	489 aa	Predicted RBP	19.51	■□□□□ 0.71
SHMT2-223	ENST00000556689	PIK3R4	Q99570	1358 aa		19.51	■□□□□ 0.71
SHMT2-223	ENST00000556689	AMOTL2	Q9Y2J4	779 aa		19.5	■□□□□ 0.71
SHMT2-223	ENST00000556689	ADAMTS13	Q76LX8	1427 aa		19.5	■□□□□ 0.71
SHMT2-223	ENST00000556689	GCC2	Q8IWJ2	1684 aa		19.46	■□□□□ 0.71
SHMT2-223	ENST00000556689	MYO5B	Q9ULV0	1848 aa		19.46	■□□□□ 0.71
SHMT2-223	ENST00000556689	ROCK1	Q13464	1354 aa		19.45	■□□□□ 0.7
SHMT2-223	ENST00000556689	COL16A1	Q07092	1604 aa	Predicted RBP	19.45	■□□□□ 0.7
SHMT2-223	ENST00000556689	BRINP3	Q76B58	766 aa		19.45	■□□□□ 0.7
SHMT2-223	ENST00000556689	NUP155	O75694	1391 aa		19.44	■□□□□ 0.7
SHMT2-223	ENST00000556689	TRIM52	Q96A61	297 aa		19.44	■□□□□ 0.7
SHMT2-223	ENST00000556689	UPF1	Q92900	1129 aa	Known RBP eCLIP	19.43	■□□□□ 0.7
SHMT2-223	ENST00000556689	LRP6	O75581	1613 aa		19.43	■□□□□ 0.7
SHMT2-223	ENST00000556689	DIP2A	Q14689	1571 aa		19.42	■□□□□ 0.7
SHMT2-223	ENST00000556689	NUTM2B	A6NNL0	878 aa	Predicted RBP	19.42	■□□□□ 0.7
SHMT2-223	ENST00000556689	NUTM2E	B1AL46	878 aa	Predicted RBP	19.42	■□□□□ 0.7
SHMT2-223	ENST00000556689	RXRB	P28702	533 aa		19.42	■□□□□ 0.7
SHMT2-223	ENST00000556689	NUTM2A	Q8IVF1	878 aa	Predicted RBP	19.42	■□□□□ 0.7
SHMT2-223	ENST00000556689	PTPRU	Q92729	1446 aa		19.42	■□□□□ 0.7
SHMT2-223	ENST00000556689	UNC13B	O14795	1591 aa		19.41	■□□□□ 0.7
SHMT2-223	ENST00000556689	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	19.41	■□□□□ 0.7
SHMT2-223	ENST00000556689	ITGAE	P38570	1179 aa		19.4	■□□□□ 0.7
SHMT2-223	ENST00000556689	AHDC1	Q5TGY3	1603 aa	Predicted RBP	19.4	■□□□□ 0.7
SHMT2-223	ENST00000556689		E9PCH4	1651 aa		19.4	■□□□□ 0.7
SHMT2-223	ENST00000556689	ZNF326	Q5BKZ1	582 aa	Known RBP	19.39	■□□□□ 0.69
SHMT2-223	ENST00000556689	TRPM2	O94759	1503 aa		19.39	■□□□□ 0.69
SHMT2-223	ENST00000556689	LRRC59	Q96AG4	307 aa	Known RBP	19.37	■□□□□ 0.69
SHMT2-223	ENST00000556689	SETD1A	O15047	1707 aa	Known RBP	19.37	■□□□□ 0.69
SHMT2-223	ENST00000556689	DCC	P43146	1447 aa		19.36	■□□□□ 0.69
SHMT2-223	ENST00000556689	IQGAP3	Q86VI3	1631 aa		19.36	■□□□□ 0.69
SHMT2-223	ENST00000556689	AFF2	P51816	1311 aa		19.34	■□□□□ 0.69
SHMT2-223	ENST00000556689	SETD5	Q9C0A6	1442 aa		19.34	■□□□□ 0.69
SHMT2-223	ENST00000556689	SHPRH	Q149N8	1683 aa		19.33	■□□□□ 0.69
SHMT2-223	ENST00000556689	MET	P08581	1390 aa		19.33	■□□□□ 0.69
SHMT2-223	ENST00000556689	MST1R	Q04912	1400 aa		19.31	■□□□□ 0.68
SHMT2-223	ENST00000556689	ASXL1	Q8IXJ9	1541 aa		19.3	■□□□□ 0.68
SHMT2-223	ENST00000556689	DDX17	Q92841	729 aa	Known RBP	19.3	■□□□□ 0.68
SHMT2-223	ENST00000556689	C8orf37	Q96NL8	207 aa		19.3	■□□□□ 0.68
SHMT2-223	ENST00000556689	QTRT2	Q9H974	415 aa	Known RBP	19.3	■□□□□ 0.68
SHMT2-223	ENST00000556689	SETBP1	Q9Y6X0	1596 aa		19.29	■□□□□ 0.68
SHMT2-223	ENST00000556689	CDK12	Q9NYV4	1490 aa	Predicted RBP	19.28	■□□□□ 0.68
SHMT2-223	ENST00000556689	RBM6	P78332	1123 aa	Known RBP	19.27	■□□□□ 0.68
SHMT2-223	ENST00000556689	PPARGC1B	Q86YN6	1023 aa	Known RBP	19.26	■□□□□ 0.67
SHMT2-223	ENST00000556689	NGLY1	Q96IV0	654 aa		19.25	■□□□□ 0.67
SHMT2-223	ENST00000556689	XRN1	Q8IZH2	1706 aa	Known RBP	19.25	■□□□□ 0.67
SHMT2-223	ENST00000556689	NRXN3	Q9Y4C0	1643 aa		19.25	■□□□□ 0.67
SHMT2-223	ENST00000556689	ADGRL3	Q9HAR2	1447 aa		19.25	■□□□□ 0.67
SHMT2-223	ENST00000556689	PNPLA6	Q8IY17	1366 aa		19.24	■□□□□ 0.67
SHMT2-223	ENST00000556689	VGF	O15240	615 aa	Predicted RBP	19.23	■□□□□ 0.67
SHMT2-223	ENST00000556689	ADAMTS2	O95450	1211 aa		19.23	■□□□□ 0.67
SHMT2-223	ENST00000556689	ORAI2	Q96SN7	254 aa		19.2	■□□□□ 0.66
SHMT2-223	ENST00000556689	NHSL1	Q5SYE7	1610 aa		19.2	■□□□□ 0.66
SHMT2-223	ENST00000556689	C1orf167	Q5SNV9	1468 aa		19.2	■□□□□ 0.66
SHMT2-223	ENST00000556689	SPHKAP	Q2M3C7	1700 aa		19.2	■□□□□ 0.66
SHMT2-223	ENST00000556689	SOS2	Q07890	1332 aa	Predicted RBP	19.18	■□□□□ 0.66
SHMT2-223	ENST00000556689	NEXMIF	Q5QGS0	1516 aa		19.17	■□□□□ 0.66
SHMT2-223	ENST00000556689	USP21	Q9UK80	565 aa		19.17	■□□□□ 0.66
SHMT2-223	ENST00000556689	RGS12	O14924	1447 aa		19.17	■□□□□ 0.66
SHMT2-223	ENST00000556689	RPGRIP1L	Q68CZ1	1315 aa		19.16	■□□□□ 0.66
SHMT2-223	ENST00000556689	ROBO2	Q9HCK4	1378 aa		19.16	■□□□□ 0.66
SHMT2-223	ENST00000556689	TRPC5	Q9UL62	973 aa	Predicted RBP	19.15	■□□□□ 0.66
SHMT2-223	ENST00000556689	CLTCL1	P53675	1640 aa		19.14	■□□□□ 0.66
SHMT2-223	ENST00000556689	FNBP4	Q8N3X1	1017 aa	Predicted RBP	19.14	■□□□□ 0.65
SHMT2-223	ENST00000556689	PTCH1	Q13635	1447 aa		19.13	■□□□□ 0.65
SHMT2-223	ENST00000556689	NALCN	Q8IZF0	1738 aa		19.11	■□□□□ 0.65
SHMT2-223	ENST00000556689	NAIP	Q13075	1403 aa		19.11	■□□□□ 0.65
SHMT2-223	ENST00000556689	ATAD2	Q6PL18	1390 aa		19.1	■□□□□ 0.65
SHMT2-223	ENST00000556689	ESCO1	Q5FWF5	840 aa		19.1	■□□□□ 0.65
SHMT2-223	ENST00000556689	SLC4A1AP	Q9BWU0	796 aa	Known RBP	19.1	■□□□□ 0.65
SHMT2-223	ENST00000556689	HFM1	A2PYH4	1435 aa		19.09	■□□□□ 0.65
SHMT2-223	ENST00000556689	NPHP3	Q7Z494	1330 aa		19.08	■□□□□ 0.65
SHMT2-223	ENST00000556689	KIF1B	O60333	1816 aa		19.07	■□□□□ 0.64
SHMT2-223	ENST00000556689	FOXD1	Q16676	465 aa		19.07	■□□□□ 0.64

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