RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 YEATS2Q9ULM3 1422 aa13.8□□□□□ -0.2
TMEM260-211ENST00000556648 MYBBP1AQ9BQG0 1328 aaKnown RBP13.8□□□□□ -0.2
TMEM260-211ENST00000556648 PER1O15534 1290 aaPredicted RBP13.8□□□□□ -0.2
TMEM260-211ENST00000556648 TMF1P82094 1093 aa13.8□□□□□ -0.2
TMEM260-211ENST00000556648 PARD3Q8TEW0 1356 aa13.8□□□□□ -0.2
TMEM260-211ENST00000556648 GLI2P10070 1586 aa13.79□□□□□ -0.2
TMEM260-211ENST00000556648 IRX6P78412 446 aaPredicted RBP13.79□□□□□ -0.2
TMEM260-211ENST00000556648 CFAP70Q5T0N1 1121 aa13.79□□□□□ -0.2
TMEM260-211ENST00000556648 PNISRQ8TF01 805 aaKnown RBP13.79□□□□□ -0.2
TMEM260-211ENST00000556648 PANK3Q9H999 370 aa13.79□□□□□ -0.2
TMEM260-211ENST00000556648 KTN1Q86UP2 1357 aaKnown RBP13.78□□□□□ -0.2
TMEM260-211ENST00000556648 RALBP1Q15311 655 aa13.78□□□□□ -0.2
TMEM260-211ENST00000556648 PELP1Q8IZL8 1130 aaKnown RBP13.78□□□□□ -0.2
TMEM260-211ENST00000556648 TMC1Q8TDI8 760 aa13.78□□□□□ -0.2
TMEM260-211ENST00000556648 NRXN1Q9ULB1 1477 aa13.78□□□□□ -0.2
TMEM260-211ENST00000556648 NOS1P29475 1434 aa13.77□□□□□ -0.2
TMEM260-211ENST00000556648 DIP2BQ9P265 1576 aa13.77□□□□□ -0.2
TMEM260-211ENST00000556648 PPLO60437 1756 aa13.77□□□□□ -0.2
TMEM260-211ENST00000556648 CHGAP10645 457 aaKnown RBP13.77□□□□□ -0.21
TMEM260-211ENST00000556648 MYOM1P52179 1685 aa13.77□□□□□ -0.21
TMEM260-211ENST00000556648 BRD4O60885 1362 aaPredicted RBP13.77□□□□□ -0.21
TMEM260-211ENST00000556648 SYNMO15061 1565 aa13.76□□□□□ -0.21
TMEM260-211ENST00000556648 WASHC2CQ9Y4E1 1318 aa13.76□□□□□ -0.21
TMEM260-211ENST00000556648 CC2D1BQ5T0F9 858 aaKnown RBP13.76□□□□□ -0.21
TMEM260-211ENST00000556648 STAC3Q96MF2 364 aa13.76□□□□□ -0.21
TMEM260-211ENST00000556648 LRPPRCP42704 1394 aaKnown RBP13.76□□□□□ -0.21
TMEM260-211ENST00000556648 TSPOAP1O95153 1857 aa13.75□□□□□ -0.21
TMEM260-211ENST00000556648 PIK3C2BO00750 1634 aa13.73□□□□□ -0.21
TMEM260-211ENST00000556648 FAM69CQ0P6D2 419 aa13.73□□□□□ -0.21
TMEM260-211ENST00000556648 KDM5AP29375 1690 aaKnown RBP13.72□□□□□ -0.21
TMEM260-211ENST00000556648 EIF3AQ14152 1382 aaKnown RBP13.72□□□□□ -0.21
TMEM260-211ENST00000556648 ERVK-7P63135 1459 aa13.72□□□□□ -0.21
TMEM260-211ENST00000556648 NLRP13Q86W25 1043 aa13.71□□□□□ -0.21
TMEM260-211ENST00000556648 ZC3H13Q5T200 1668 aaKnown RBP13.71□□□□□ -0.21
TMEM260-211ENST00000556648 MYO3AQ8NEV4 1616 aa13.71□□□□□ -0.21
TMEM260-211ENST00000556648 ZMYM4Q5VZL5 1548 aa13.71□□□□□ -0.22
TMEM260-211ENST00000556648 PIK3C2GO75747 1445 aa13.71□□□□□ -0.22
TMEM260-211ENST00000556648 SMG6Q86US8 1419 aaKnown RBP13.71□□□□□ -0.22
TMEM260-211ENST00000556648 SETBP1Q9Y6X0 1596 aa13.7□□□□□ -0.22
TMEM260-211ENST00000556648 ADGRB1O14514 1584 aa13.69□□□□□ -0.22
TMEM260-211ENST00000556648 NUTM2DQ5VT03 806 aaPredicted RBP13.69□□□□□ -0.22
TMEM260-211ENST00000556648 NEXMIFQ5QGS0 1516 aa13.69□□□□□ -0.22
TMEM260-211ENST00000556648 TSHZ2Q9NRE2 1034 aa13.68□□□□□ -0.22
TMEM260-211ENST00000556648 MYO5BQ9ULV0 1848 aa13.68□□□□□ -0.22
TMEM260-211ENST00000556648 PREX1Q8TCU6 1659 aa13.67□□□□□ -0.22
TMEM260-211ENST00000556648 ARHGAP31Q2M1Z3 1444 aa13.67□□□□□ -0.22
TMEM260-211ENST00000556648 QRICH2Q9H0J4 1663 aa13.66□□□□□ -0.22
TMEM260-211ENST00000556648 AMER1Q5JTC6 1135 aaPredicted RBP13.66□□□□□ -0.22
TMEM260-211ENST00000556648 NUDCQ9Y266 331 aa13.66□□□□□ -0.22
TMEM260-211ENST00000556648 ASXL1Q8IXJ9 1541 aa13.66□□□□□ -0.22
TMEM260-211ENST00000556648 CDCA8Q53HL2 280 aa13.65□□□□□ -0.22
TMEM260-211ENST00000556648 TMEM132EQ6IEE7 984 aa13.65□□□□□ -0.22
TMEM260-211ENST00000556648 C14orf93Q9H972 538 aaKnown RBP13.64□□□□□ -0.23
TMEM260-211ENST00000556648 TRAK1Q9UPV9 953 aa13.64□□□□□ -0.23
TMEM260-211ENST00000556648 KNSTRNQ9Y448 316 aa13.64□□□□□ -0.23
TMEM260-211ENST00000556648 IDI1Q13907 227 aa13.64□□□□□ -0.23
TMEM260-211ENST00000556648 SALL2Q9Y467 1007 aaPredicted RBP13.63□□□□□ -0.23
TMEM260-211ENST00000556648 BLMP54132 1417 aaPredicted RBP13.63□□□□□ -0.23
TMEM260-211ENST00000556648 RPGRIP1LQ68CZ1 1315 aa13.63□□□□□ -0.23
TMEM260-211ENST00000556648 CENPJQ9HC77 1338 aaPredicted RBP13.63□□□□□ -0.23
TMEM260-211ENST00000556648 TMEM131LA2VDJ0 1609 aa13.62□□□□□ -0.23
TMEM260-211ENST00000556648 PPP2R1AP30153 589 aa13.62□□□□□ -0.23
TMEM260-211ENST00000556648 KIF13AQ9H1H9 1805 aa13.62□□□□□ -0.23
TMEM260-211ENST00000556648 ARHGEF28Q8N1W1 1705 aaKnown RBP13.62□□□□□ -0.23
TMEM260-211ENST00000556648 FBXO31Q5XUX0 539 aaPredicted RBP13.61□□□□□ -0.23
TMEM260-211ENST00000556648 SBNO2Q9Y2G9 1366 aa13.61□□□□□ -0.23
TMEM260-211ENST00000556648 CARD14Q9BXL6 1004 aa13.61□□□□□ -0.23
TMEM260-211ENST00000556648 CLTCQ00610 1675 aaKnown RBP13.6□□□□□ -0.23
TMEM260-211ENST00000556648 REREQ9P2R6 1566 aa13.59□□□□□ -0.23
TMEM260-211ENST00000556648 RNF123Q5XPI4 1314 aa13.58□□□□□ -0.24
TMEM260-211ENST00000556648 AGLP35573 1532 aa13.58□□□□□ -0.24
TMEM260-211ENST00000556648 TULP4Q9NRJ4 1543 aa13.58□□□□□ -0.24
TMEM260-211ENST00000556648 PPP4R2Q9NY27 417 aa13.57□□□□□ -0.24
TMEM260-211ENST00000556648 NPC1L1Q9UHC9 1359 aa13.57□□□□□ -0.24
TMEM260-211ENST00000556648 VGFO15240 615 aaPredicted RBP13.56□□□□□ -0.24
TMEM260-211ENST00000556648 ARHGEF40Q8TER5 1519 aa13.56□□□□□ -0.24
TMEM260-211ENST00000556648 ERICH6BQ5W0A0 696 aa13.56□□□□□ -0.24
TMEM260-211ENST00000556648 CDCA7LQ96GN5 454 aa13.56□□□□□ -0.24
TMEM260-211ENST00000556648 SLC52A1Q9NWF4 448 aa13.56□□□□□ -0.24
TMEM260-211ENST00000556648 ADAMTS8Q9UP79 889 aa13.56□□□□□ -0.24
TMEM260-211ENST00000556648 INSRP06213 1382 aa13.55□□□□□ -0.24
TMEM260-211ENST00000556648 B4GALNT3Q6L9W6 998 aa13.55□□□□□ -0.24
TMEM260-211ENST00000556648 MLECQ14165 292 aa13.54□□□□□ -0.24
TMEM260-211ENST00000556648 ZFYVE9O95405 1425 aa13.54□□□□□ -0.24
TMEM260-211ENST00000556648 NSD3Q9BZ95 1437 aa13.54□□□□□ -0.24
TMEM260-211ENST00000556648 SLC12A5Q9H2X9 1139 aa13.54□□□□□ -0.24
TMEM260-211ENST00000556648 SLC24A1O60721 1099 aa13.53□□□□□ -0.24
TMEM260-211ENST00000556648 SAFB2Q14151 953 aaKnown RBP eCLIP13.52□□□□□ -0.24
TMEM260-211ENST00000556648 STK26Q9P289 416 aa13.52□□□□□ -0.24
TMEM260-211ENST00000556648 PLPPR3Q6T4P5 718 aa13.52□□□□□ -0.25
TMEM260-211ENST00000556648 SPATA31D1Q6ZQQ2 1576 aa13.51□□□□□ -0.25
TMEM260-211ENST00000556648 PLEKHH1Q9ULM0 1364 aa13.51□□□□□ -0.25
TMEM260-211ENST00000556648 PTPRMP28827 1452 aa13.51□□□□□ -0.25
TMEM260-211ENST00000556648 WDR43Q15061 677 aaKnown RBP eCLIP13.51□□□□□ -0.25
TMEM260-211ENST00000556648 ALKQ9UM73 1620 aa13.5□□□□□ -0.25
TMEM260-211ENST00000556648 A2ML1A8K2U0 1454 aa13.49□□□□□ -0.25
TMEM260-211ENST00000556648 PDE3BQ13370 1112 aa13.49□□□□□ -0.25
TMEM260-211ENST00000556648 CCDC146Q8IYE0 955 aa13.49□□□□□ -0.25
TMEM260-211ENST00000556648 USP32Q8NFA0 1604 aa13.49□□□□□ -0.25
TMEM260-211ENST00000556648 CABP2Q9NPB3 220 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms