RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 PNMA3Q9UL41 463 aa11.87□□□□□ -0.51
LINC00643-204ENST00000555934 TIMELESSQ9UNS1 1208 aa11.87□□□□□ -0.51
LINC00643-204ENST00000555934 DAXXQ9UER7 740 aaPredicted RBP11.86□□□□□ -0.51
LINC00643-204ENST00000555934 RCCD1A6NED2 376 aa11.84□□□□□ -0.51
LINC00643-204ENST00000555934 EYA1Q99502 592 aa11.84□□□□□ -0.51
LINC00643-204ENST00000555934 BHMG1C9JSJ3 638 aaPredicted RBP11.83□□□□□ -0.52
LINC00643-204ENST00000555934 HRO43593 1189 aa11.83□□□□□ -0.52
LINC00643-204ENST00000555934 NBPF3Q9H094 633 aa11.83□□□□□ -0.52
LINC00643-204ENST00000555934 FAM217BQ9NTX9 383 aaPredicted RBP11.83□□□□□ -0.52
LINC00643-204ENST00000555934 SEPT9Q9UHD8 586 aaPredicted RBP11.82□□□□□ -0.52
LINC00643-204ENST00000555934 BEGAINQ9BUH8 593 aa11.81□□□□□ -0.52
LINC00643-204ENST00000555934 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.8□□□□□ -0.52
LINC00643-204ENST00000555934 FAM98CQ17RN3 349 aaKnown RBP11.78□□□□□ -0.52
LINC00643-204ENST00000555934 LAPTM4BQ86VI4 370 aa11.78□□□□□ -0.52
LINC00643-204ENST00000555934 MRPL50Q8N5N7 158 aaKnown RBP11.78□□□□□ -0.52
LINC00643-204ENST00000555934 DNAJB2P25686 324 aa11.77□□□□□ -0.53
LINC00643-204ENST00000555934 C14orf37Q86TY3 774 aa11.77□□□□□ -0.53
LINC00643-204ENST00000555934 HCSTQ9UBK5 93 aa11.76□□□□□ -0.53
LINC00643-204ENST00000555934 ATP1B4Q9UN42 357 aaPredicted RBP11.76□□□□□ -0.53
LINC00643-204ENST00000555934 DDX11L8A8MPP1 907 aa11.75□□□□□ -0.53
LINC00643-204ENST00000555934 STAC3Q96MF2 364 aa11.75□□□□□ -0.53
LINC00643-204ENST00000555934 TMEM134Q9H6X4 195 aa11.73□□□□□ -0.53
LINC00643-204ENST00000555934 ZFRQ96KR1 1074 aaKnown RBP11.72□□□□□ -0.53
LINC00643-204ENST00000555934 PCMTD1Q96MG8 357 aaPredicted RBP11.72□□□□□ -0.53
LINC00643-204ENST00000555934 POLR3EQ9NVU0 708 aa11.72□□□□□ -0.53
LINC00643-204ENST00000555934 PLA2G2EQ9NZK7 142 aa11.71□□□□□ -0.53
LINC00643-204ENST00000555934 SH3D19Q5HYK7 790 aa11.7□□□□□ -0.54
LINC00643-204ENST00000555934 GOLGA8CPA6NN73 597 aa11.69□□□□□ -0.54
LINC00643-204ENST00000555934 RDH13Q8NBN7 331 aa11.69□□□□□ -0.54
LINC00643-204ENST00000555934 CD46P15529 392 aa11.68□□□□□ -0.54
LINC00643-204ENST00000555934 SWT1Q5T5J6 900 aaKnown RBP11.68□□□□□ -0.54
LINC00643-204ENST00000555934 SAMD7Q7Z3H4 446 aa11.68□□□□□ -0.54
LINC00643-204ENST00000555934 SULF1Q8IWU6 871 aa11.68□□□□□ -0.54
LINC00643-204ENST00000555934 TBC1D2Q9BYX2 928 aa11.68□□□□□ -0.54
LINC00643-204ENST00000555934 RSPH6AQ9H0K4 717 aa11.68□□□□□ -0.54
LINC00643-204ENST00000555934 MYSM1Q5VVJ2 828 aa11.67□□□□□ -0.54
LINC00643-204ENST00000555934 PROCA1Q8NCQ7 364 aaPredicted RBP11.67□□□□□ -0.54
LINC00643-204ENST00000555934 GOPCQ9HD26 462 aa11.67□□□□□ -0.54
LINC00643-204ENST00000555934 HDGFP51858 240 aaKnown RBP11.66□□□□□ -0.54
LINC00643-204ENST00000555934 SKIV2LQ15477 1246 aaKnown RBP11.66□□□□□ -0.54
LINC00643-204ENST00000555934 ANKK1Q8NFD2 765 aa11.65□□□□□ -0.54
LINC00643-204ENST00000555934 SPIRE2Q8WWL2 714 aa11.65□□□□□ -0.54
LINC00643-204ENST00000555934 NUTM1Q86Y26 1132 aa11.64□□□□□ -0.55
LINC00643-204ENST00000555934 WNT2BQ93097 391 aa11.64□□□□□ -0.55
LINC00643-204ENST00000555934 LRCH3Q96II8 777 aa11.64□□□□□ -0.55
LINC00643-204ENST00000555934 RNF40O75150 1001 aa11.63□□□□□ -0.55
LINC00643-204ENST00000555934 ERICH6Q7L0X2 663 aa11.63□□□□□ -0.55
LINC00643-204ENST00000555934 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.63□□□□□ -0.55
LINC00643-204ENST00000555934 CLK2P49760 499 aaKnown RBP11.62□□□□□ -0.55
LINC00643-204ENST00000555934 SOWAHBA6NEL2 793 aa11.61□□□□□ -0.55
LINC00643-204ENST00000555934 SLC10A3P09131 477 aa11.61□□□□□ -0.55
LINC00643-204ENST00000555934 SLC4A3P48751 1232 aa11.61□□□□□ -0.55
LINC00643-204ENST00000555934 SLF2Q8IX21 1173 aa11.61□□□□□ -0.55
LINC00643-204ENST00000555934 BCAMP50895 628 aa11.6□□□□□ -0.55
LINC00643-204ENST00000555934 CSPP1Q1MSJ5 1256 aa11.6□□□□□ -0.55
LINC00643-204ENST00000555934 KCTD12Q96CX2 325 aaKnown RBP11.6□□□□□ -0.55
LINC00643-204ENST00000555934 LIMD1Q9UGP4 676 aa11.6□□□□□ -0.55
LINC00643-204ENST00000555934 NDUFV2P19404 249 aa11.59□□□□□ -0.55
LINC00643-204ENST00000555934 RIC3Q7Z5B4 369 aa11.59□□□□□ -0.55
LINC00643-204ENST00000555934 MOXD2PA6NHM9 499 aa11.58□□□□□ -0.56
LINC00643-204ENST00000555934 DIXDC1Q155Q3 683 aa11.58□□□□□ -0.56
LINC00643-204ENST00000555934 THSD4Q6ZMP0 1018 aa11.58□□□□□ -0.56
LINC00643-204ENST00000555934 RSPH4AQ5TD94 716 aa11.57□□□□□ -0.56
LINC00643-204ENST00000555934 KDM4AO75164 1064 aa11.56□□□□□ -0.56
LINC00643-204ENST00000555934 GCGRP47871 477 aa11.56□□□□□ -0.56
LINC00643-204ENST00000555934 HPS5Q9UPZ3 1129 aa11.56□□□□□ -0.56
LINC00643-204ENST00000555934 FBXO31Q5XUX0 539 aaPredicted RBP11.55□□□□□ -0.56
LINC00643-204ENST00000555934 RSBN1LQ6PCB5 846 aaPredicted RBP11.54□□□□□ -0.56
LINC00643-204ENST00000555934 NECTIN2Q92692 538 aa11.54□□□□□ -0.56
LINC00643-204ENST00000555934 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.54□□□□□ -0.56
LINC00643-204ENST00000555934 TSR3Q9UJK0 312 aaKnown RBP11.54□□□□□ -0.56
LINC00643-204ENST00000555934 HLA-CQ95604 372 aa11.53□□□□□ -0.56
LINC00643-204ENST00000555934 SPTLC1O15269 473 aa11.52□□□□□ -0.57
LINC00643-204ENST00000555934 CFHP08603 1231 aa11.52□□□□□ -0.57
LINC00643-204ENST00000555934 PPP4CP60510 307 aa11.52□□□□□ -0.57
LINC00643-204ENST00000555934 GUCA2AQ02747 115 aa11.52□□□□□ -0.57
LINC00643-204ENST00000555934 PCDHB15Q9Y5E8 787 aa11.52□□□□□ -0.57
LINC00643-204ENST00000555934 WBP1LQ9NX94 342 aa11.51□□□□□ -0.57
LINC00643-204ENST00000555934 HOXA2O43364 376 aa11.5□□□□□ -0.57
LINC00643-204ENST00000555934 SUPT5HO00267 1087 aaKnown RBP11.49□□□□□ -0.57
LINC00643-204ENST00000555934 RFC5P40937 340 aa11.49□□□□□ -0.57
LINC00643-204ENST00000555934 QPCTQ16769 361 aa11.49□□□□□ -0.57
LINC00643-204ENST00000555934 CABLES1Q8TDN4 633 aa11.49□□□□□ -0.57
LINC00643-204ENST00000555934 FUT2Q10981 343 aa11.48□□□□□ -0.57
LINC00643-204ENST00000555934 IFFO2Q5TF58 517 aa11.48□□□□□ -0.57
LINC00643-204ENST00000555934 FDX1P10109 184 aa11.47□□□□□ -0.57
LINC00643-204ENST00000555934 PTPN5P54829 565 aa11.47□□□□□ -0.57
LINC00643-204ENST00000555934 USP46P62068 366 aa11.47□□□□□ -0.57
LINC00643-204ENST00000555934 FLIIQ13045 1269 aa11.47□□□□□ -0.57
LINC00643-204ENST00000555934 KMT5BQ4FZB7 885 aa11.47□□□□□ -0.57
LINC00643-204ENST00000555934 NUTM2BA6NNL0 878 aaPredicted RBP11.46□□□□□ -0.57
LINC00643-204ENST00000555934 NUTM2EB1AL46 878 aaPredicted RBP11.46□□□□□ -0.57
LINC00643-204ENST00000555934 NUTM2DQ5VT03 806 aaPredicted RBP11.46□□□□□ -0.57
LINC00643-204ENST00000555934 NUTM2AQ8IVF1 878 aaPredicted RBP11.46□□□□□ -0.57
LINC00643-204ENST00000555934 PRR14Q9BWN1 585 aa11.46□□□□□ -0.57
LINC00643-204ENST00000555934 APLP1P51693 650 aa11.45□□□□□ -0.58
LINC00643-204ENST00000555934 RTL5Q5HYW3 569 aaPredicted RBP11.45□□□□□ -0.58
LINC00643-204ENST00000555934 ZMYND15Q9H091 742 aa11.45□□□□□ -0.58
LINC00643-204ENST00000555934 PCDHGC3Q9UN70 934 aa11.45□□□□□ -0.58
LINC00643-204ENST00000555934 NYAP1Q6ZVC0 841 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms