RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 CEBPAP49715 358 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-220ENST00000555634 RPGRIP1LQ68CZ1 1315 aa16.02■□□□□ 0.16
SHMT2-220ENST00000555634 RGL3Q3MIN7 710 aa16.02■□□□□ 0.16
SHMT2-220ENST00000555634 HDGFP51858 240 aaKnown RBP16.01■□□□□ 0.15
SHMT2-220ENST00000555634 IDI1Q13907 227 aa16.01■□□□□ 0.15
SHMT2-220ENST00000555634 TRPM1Q7Z4N2 1603 aa16.01■□□□□ 0.15
SHMT2-220ENST00000555634 DCAF11Q8TEB1 546 aa15.99■□□□□ 0.15
SHMT2-220ENST00000555634 L3MBTL2Q969R5 705 aa15.99■□□□□ 0.15
SHMT2-220ENST00000555634 SLIT1O75093 1534 aa15.98■□□□□ 0.15
SHMT2-220ENST00000555634 PPP1R15AO75807 674 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-220ENST00000555634 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.97■□□□□ 0.15
SHMT2-220ENST00000555634 RIMS2Q9UQ26 1411 aa15.96■□□□□ 0.15
SHMT2-220ENST00000555634 THEMISQ8N1K5 641 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-220ENST00000555634 IQGAP1P46940 1657 aa15.95■□□□□ 0.14
SHMT2-220ENST00000555634 PRAG1Q86YV5 1406 aa15.95■□□□□ 0.14
SHMT2-220ENST00000555634 VGFO15240 615 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-220ENST00000555634 EID1Q9Y6B2 187 aa15.95■□□□□ 0.14
SHMT2-220ENST00000555634 RALGAPBQ86X10 1494 aa15.95■□□□□ 0.14
SHMT2-220ENST00000555634 KDM2AQ9Y2K7 1162 aa15.94■□□□□ 0.14
SHMT2-220ENST00000555634 TMEM2Q9UHN6 1383 aa15.94■□□□□ 0.14
SHMT2-220ENST00000555634 ZFYVE9O95405 1425 aa15.94■□□□□ 0.14
SHMT2-220ENST00000555634 DIP2AQ14689 1571 aa15.93■□□□□ 0.14
SHMT2-220ENST00000555634 SETBP1Q9Y6X0 1596 aa15.92■□□□□ 0.14
SHMT2-220ENST00000555634 SCAF11Q99590 1463 aaKnown RBP15.92■□□□□ 0.14
SHMT2-220ENST00000555634 ARHGAP23Q9P227 1491 aa15.92■□□□□ 0.14
SHMT2-220ENST00000555634 NRXN1Q9ULB1 1477 aa15.92■□□□□ 0.14
SHMT2-220ENST00000555634 PIK3C2GO75747 1445 aa15.92■□□□□ 0.14
SHMT2-220ENST00000555634 ROCK2O75116 1388 aaKnown RBP15.89■□□□□ 0.13
SHMT2-220ENST00000555634 SETD1AO15047 1707 aaKnown RBP15.88■□□□□ 0.13
SHMT2-220ENST00000555634 NRXN3Q9Y4C0 1643 aa15.87■□□□□ 0.13
SHMT2-220ENST00000555634 BCANQ96GW7 911 aa15.87■□□□□ 0.13
SHMT2-220ENST00000555634 EIF3AQ14152 1382 aaKnown RBP15.87■□□□□ 0.13
SHMT2-220ENST00000555634 ALKQ9UM73 1620 aa15.86■□□□□ 0.13
SHMT2-220ENST00000555634 LMTK3Q96Q04 1460 aa15.86■□□□□ 0.13
SHMT2-220ENST00000555634 KNDC1Q76NI1 1749 aa15.86■□□□□ 0.13
SHMT2-220ENST00000555634 PLEKHG1Q9ULL1 1385 aa15.86■□□□□ 0.13
SHMT2-220ENST00000555634 FBXO41Q8TF61 875 aa15.85■□□□□ 0.13
SHMT2-220ENST00000555634 ANKLE2Q86XL3 938 aa15.84■□□□□ 0.13
SHMT2-220ENST00000555634 TXNDC2Q86VQ3 553 aa15.83■□□□□ 0.12
SHMT2-220ENST00000555634 ADGRF5Q8IZF2 1346 aa15.83■□□□□ 0.12
SHMT2-220ENST00000555634 ARHGEF28Q8N1W1 1705 aaKnown RBP15.82■□□□□ 0.12
SHMT2-220ENST00000555634 NUTM2DQ5VT03 806 aaPredicted RBP15.82■□□□□ 0.12
SHMT2-220ENST00000555634 CARD11Q9BXL7 1154 aa15.81■□□□□ 0.12
SHMT2-220ENST00000555634 QRICH2Q9H0J4 1663 aa15.81■□□□□ 0.12
SHMT2-220ENST00000555634 GPRASP1Q5JY77 1395 aa15.8■□□□□ 0.12
SHMT2-220ENST00000555634 MED14O60244 1454 aa15.79■□□□□ 0.12
SHMT2-220ENST00000555634 NPHP4O75161 1426 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-220ENST00000555634 NBPF8Q3BBV2 869 aa15.79■□□□□ 0.12
SHMT2-220ENST00000555634 ADGRB1O14514 1584 aa15.79■□□□□ 0.12
SHMT2-220ENST00000555634 USP47Q96K76 1375 aa15.78■□□□□ 0.12
SHMT2-220ENST00000555634 EIF4G2P78344 907 aaKnown RBP eCLIP15.77■□□□□ 0.12
SHMT2-220ENST00000555634 C14orf93Q9H972 538 aaKnown RBP15.77■□□□□ 0.12
SHMT2-220ENST00000555634 STRCQ7RTU9 1775 aa15.77■□□□□ 0.11
SHMT2-220ENST00000555634 CHD2O14647 1828 aaKnown RBP15.76■□□□□ 0.11
SHMT2-220ENST00000555634 CPS1P31327 1500 aa15.76■□□□□ 0.11
SHMT2-220ENST00000555634 ASXL1Q8IXJ9 1541 aa15.76■□□□□ 0.11
SHMT2-220ENST00000555634 CFAP70Q5T0N1 1121 aa15.75■□□□□ 0.11
SHMT2-220ENST00000555634 XRN1Q8IZH2 1706 aaKnown RBP15.74■□□□□ 0.11
SHMT2-220ENST00000555634 DLC1Q96QB1 1528 aa15.74■□□□□ 0.11
SHMT2-220ENST00000555634 LTKP29376 864 aa15.74■□□□□ 0.11
SHMT2-220ENST00000555634 YTHDC2Q9H6S0 1430 aaKnown RBP15.74■□□□□ 0.11
SHMT2-220ENST00000555634 PIK3R4Q99570 1358 aa15.74■□□□□ 0.11
SHMT2-220ENST00000555634 ADAMTS13Q76LX8 1427 aa15.73■□□□□ 0.11
SHMT2-220ENST00000555634 NWD1Q149M9 1564 aa15.72■□□□□ 0.11
SHMT2-220ENST00000555634 SENP3Q9H4L4 574 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-220ENST00000555634 SLC24A1O60721 1099 aa15.71■□□□□ 0.11
SHMT2-220ENST00000555634 NBPF1Q3BBV0 1214 aa15.7■□□□□ 0.1
SHMT2-220ENST00000555634 LRPPRCP42704 1394 aaKnown RBP15.7■□□□□ 0.1
SHMT2-220ENST00000555634 SOCS7O14512 581 aa15.69■□□□□ 0.1
SHMT2-220ENST00000555634 HSPA2P54652 639 aa15.69■□□□□ 0.1
SHMT2-220ENST00000555634 TBX22Q9Y458 520 aa15.69■□□□□ 0.1
SHMT2-220ENST00000555634 NCKAP5LQ9HCH0 1330 aa15.68■□□□□ 0.1
SHMT2-220ENST00000555634 PTCH1Q13635 1447 aa15.68■□□□□ 0.1
SHMT2-220ENST00000555634 NKTRP30414 1462 aaKnown RBP15.68■□□□□ 0.1
SHMT2-220ENST00000555634 SLC26A8Q96RN1 970 aa15.68■□□□□ 0.1
SHMT2-220ENST00000555634 DMRT2Q9Y5R5 561 aa15.68■□□□□ 0.1
SHMT2-220ENST00000555634 TECPR2O15040 1411 aa15.68■□□□□ 0.1
SHMT2-220ENST00000555634 CENPJQ9HC77 1338 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-220ENST00000555634 METP08581 1390 aa15.66■□□□□ 0.1
SHMT2-220ENST00000555634 HSPA5P11021 654 aaKnown RBP15.66■□□□□ 0.1
SHMT2-220ENST00000555634 TMEM132EQ6IEE7 984 aa15.66■□□□□ 0.1
SHMT2-220ENST00000555634 ILDR2Q71H61 639 aa15.66■□□□□ 0.1
SHMT2-220ENST00000555634 TRAK1Q9UPV9 953 aa15.66■□□□□ 0.1
SHMT2-220ENST00000555634 FAM135BQ49AJ0 1406 aa15.66■□□□□ 0.1
SHMT2-220ENST00000555634 ABCC11Q96J66 1382 aa15.65■□□□□ 0.1
SHMT2-220ENST00000555634 POGKQ9P215 609 aa15.65■□□□□ 0.1
SHMT2-220ENST00000555634 STK26Q9P289 416 aa15.65■□□□□ 0.1
SHMT2-220ENST00000555634 ITSN1Q15811 1721 aa15.65■□□□□ 0.1
SHMT2-220ENST00000555634 SBNO2Q9Y2G9 1366 aa15.64■□□□□ 0.09
SHMT2-220ENST00000555634 ADGRB2O60241 1585 aa15.64■□□□□ 0.09
SHMT2-220ENST00000555634 ZNF316A6NFI3 1004 aaPredicted RBP15.63■□□□□ 0.09
SHMT2-220ENST00000555634 CDCA8Q53HL2 280 aa15.63■□□□□ 0.09
SHMT2-220ENST00000555634 NALCNQ8IZF0 1738 aa15.63■□□□□ 0.09
SHMT2-220ENST00000555634 ST20-MTHFSA0A0A6YYL1 179 aa15.61■□□□□ 0.09
SHMT2-220ENST00000555634 TMF1P82094 1093 aa15.61■□□□□ 0.09
SHMT2-220ENST00000555634 PRAM1Q96QH2 718 aa15.59■□□□□ 0.09
SHMT2-220ENST00000555634 AMOTL2Q9Y2J4 779 aa15.59■□□□□ 0.09
SHMT2-220ENST00000555634 STRCP1A6NGW2 1772 aa15.59■□□□□ 0.09
SHMT2-220ENST00000555634 CDC42BPGQ6DT37 1551 aa15.58■□□□□ 0.09
SHMT2-220ENST00000555634 SIRT1Q96EB6 747 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 768.2 ms