RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-217	ENST00000555022	CCDC144A	A2RUR9	1427 aa		11.27	□□□□□ -0.61
SYNE2-217	ENST00000555022	HSCB	Q8IWL3	235 aa		11.27	□□□□□ -0.61
SYNE2-217	ENST00000555022	ERBIN	Q96RT1	1412 aa		11.26	□□□□□ -0.61
SYNE2-217	ENST00000555022	CHAMP1	Q96JM3	812 aa		11.26	□□□□□ -0.61
SYNE2-217	ENST00000555022	TBC1D32	Q96NH3	1257 aa		11.26	□□□□□ -0.61
SYNE2-217	ENST00000555022	URB2	Q14146	1524 aa	Known RBP	11.26	□□□□□ -0.61
SYNE2-217	ENST00000555022	PLEKHD1	A6NEE1	506 aa		11.26	□□□□□ -0.61
SYNE2-217	ENST00000555022	ITPRIP	Q8IWB1	547 aa		11.26	□□□□□ -0.61
SYNE2-217	ENST00000555022	RBM42	Q9BTD8	480 aa	Known RBP	11.26	□□□□□ -0.61
SYNE2-217	ENST00000555022	ARHGEF11	O15085	1522 aa		11.26	□□□□□ -0.61
SYNE2-217	ENST00000555022	LNPK	Q9C0E8	428 aa		11.25	□□□□□ -0.61
SYNE2-217	ENST00000555022	DNMBP	Q6XZF7	1577 aa		11.25	□□□□□ -0.61
SYNE2-217	ENST00000555022	KIF14	Q15058	1648 aa		11.25	□□□□□ -0.61
SYNE2-217	ENST00000555022	SAFB2	Q14151	953 aa	Known RBP eCLIP	11.25	□□□□□ -0.61
SYNE2-217	ENST00000555022	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	11.25	□□□□□ -0.61
SYNE2-217	ENST00000555022	FOXD4L3	Q6VB84	417 aa	Predicted RBP	11.25	□□□□□ -0.61
SYNE2-217	ENST00000555022	KIAA1211	Q6ZU35	1233 aa		11.25	□□□□□ -0.61
SYNE2-217	ENST00000555022	BLM	P54132	1417 aa	Predicted RBP	11.25	□□□□□ -0.61
SYNE2-217	ENST00000555022	SAMD9	Q5K651	1589 aa		11.25	□□□□□ -0.61
SYNE2-217	ENST00000555022	PLB1	Q6P1J6	1458 aa		11.24	□□□□□ -0.61
SYNE2-217	ENST00000555022	CLCN1	P35523	988 aa		11.24	□□□□□ -0.61
SYNE2-217	ENST00000555022	C1orf115	Q9H7X2	142 aa		11.24	□□□□□ -0.61
SYNE2-217	ENST00000555022	MAPK8IP3	Q9UPT6	1336 aa		11.24	□□□□□ -0.61
SYNE2-217	ENST00000555022	LAMC3	Q9Y6N6	1575 aa		11.24	□□□□□ -0.61
SYNE2-217	ENST00000555022	APBB1	O00213	710 aa		11.24	□□□□□ -0.61
SYNE2-217	ENST00000555022	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.24	□□□□□ -0.61
SYNE2-217	ENST00000555022	ZMYM4	Q5VZL5	1548 aa		11.23	□□□□□ -0.61
SYNE2-217	ENST00000555022		E9PSI1	815 aa		11.23	□□□□□ -0.61
SYNE2-217	ENST00000555022	CHMP5	Q9NZZ3	219 aa		11.23	□□□□□ -0.61
SYNE2-217	ENST00000555022	R3HCC1	Q9Y3T6	440 aa	Known RBP	11.23	□□□□□ -0.61
SYNE2-217	ENST00000555022	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.23	□□□□□ -0.61
SYNE2-217	ENST00000555022	CGNL1	Q0VF96	1302 aa		11.23	□□□□□ -0.61
SYNE2-217	ENST00000555022	WWC1	Q8IX03	1113 aa		11.22	□□□□□ -0.61
SYNE2-217	ENST00000555022	C9orf84	Q5VXU9	1444 aa		11.22	□□□□□ -0.61
SYNE2-217	ENST00000555022	U2SURP	O15042	1029 aa	Known RBP	11.22	□□□□□ -0.61
SYNE2-217	ENST00000555022	CUL7	Q14999	1698 aa		11.21	□□□□□ -0.61
SYNE2-217	ENST00000555022	MRE11	P49959	708 aa		11.21	□□□□□ -0.61
SYNE2-217	ENST00000555022	TCP11L2	Q8N4U5	519 aa		11.21	□□□□□ -0.61
SYNE2-217	ENST00000555022	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.21	□□□□□ -0.61
SYNE2-217	ENST00000555022	TNPO1	Q92973	898 aa	Known RBP	11.21	□□□□□ -0.61
SYNE2-217	ENST00000555022	SSFA2	P28290	1259 aa		11.2	□□□□□ -0.62
SYNE2-217	ENST00000555022	SMC4	Q9NTJ3	1288 aa		11.2	□□□□□ -0.62
SYNE2-217	ENST00000555022	DNMT1	P26358	1616 aa	Known RBP	11.2	□□□□□ -0.62
SYNE2-217	ENST00000555022	NUP153	P49790	1475 aa	Known RBP	11.2	□□□□□ -0.62
SYNE2-217	ENST00000555022	MAGI2	Q86UL8	1455 aa		11.2	□□□□□ -0.62
SYNE2-217	ENST00000555022	ELL2	O00472	640 aa	Predicted RBP	11.2	□□□□□ -0.62
SYNE2-217	ENST00000555022	CD2BP2	O95400	341 aa	Known RBP	11.2	□□□□□ -0.62
SYNE2-217	ENST00000555022	RARS	P54136	660 aa	Known RBP	11.2	□□□□□ -0.62
SYNE2-217	ENST00000555022	JARID2	Q92833	1246 aa	Predicted RBP	11.2	□□□□□ -0.62
SYNE2-217	ENST00000555022	ZNF521	Q96K83	1311 aa		11.2	□□□□□ -0.62
SYNE2-217	ENST00000555022	NKTR	P30414	1462 aa	Known RBP	11.2	□□□□□ -0.62
SYNE2-217	ENST00000555022	XPC	Q01831	940 aa	Predicted RBP	11.2	□□□□□ -0.62
SYNE2-217	ENST00000555022	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.2	□□□□□ -0.62
SYNE2-217	ENST00000555022	PRAG1	Q86YV5	1406 aa		11.19	□□□□□ -0.62
SYNE2-217	ENST00000555022	FSD2	A1L4K1	749 aa		11.19	□□□□□ -0.62
SYNE2-217	ENST00000555022	RRP9	O43818	475 aa	Known RBP	11.19	□□□□□ -0.62
SYNE2-217	ENST00000555022	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.19	□□□□□ -0.62
SYNE2-217	ENST00000555022	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.19	□□□□□ -0.62
SYNE2-217	ENST00000555022	RWDD1	Q9H446	243 aa	Predicted RBP	11.19	□□□□□ -0.62
SYNE2-217	ENST00000555022	POLR1A	O95602	1720 aa	Predicted RBP	11.19	□□□□□ -0.62
SYNE2-217	ENST00000555022	NOL8	Q76FK4	1167 aa	Known RBP	11.19	□□□□□ -0.62
SYNE2-217	ENST00000555022	MORC1	Q86VD1	984 aa		11.19	□□□□□ -0.62
SYNE2-217	ENST00000555022	WDR62	O43379	1518 aa		11.19	□□□□□ -0.62
SYNE2-217	ENST00000555022	GPATCH8	Q9UKJ3	1502 aa	Known RBP	11.19	□□□□□ -0.62
SYNE2-217	ENST00000555022	FAM177B	A6PVY3	158 aa		11.19	□□□□□ -0.62
SYNE2-217	ENST00000555022	EIF3A	Q14152	1382 aa	Known RBP	11.19	□□□□□ -0.62
SYNE2-217	ENST00000555022	RNF214	Q8ND24	703 aa		11.18	□□□□□ -0.62
SYNE2-217	ENST00000555022	PMFBP1	Q8TBY8	1022 aa		11.18	□□□□□ -0.62
SYNE2-217	ENST00000555022	TSC1	Q92574	1164 aa		11.18	□□□□□ -0.62
SYNE2-217	ENST00000555022	ZHX1	Q9UKY1	873 aa	Predicted RBP	11.18	□□□□□ -0.62
SYNE2-217	ENST00000555022	CFAP70	Q5T0N1	1121 aa		11.18	□□□□□ -0.62
SYNE2-217	ENST00000555022	DDX49	Q9Y6V7	483 aa	Known RBP	11.18	□□□□□ -0.62
SYNE2-217	ENST00000555022	UHRF1BP1	Q6BDS2	1440 aa		11.17	□□□□□ -0.62
SYNE2-217	ENST00000555022	CARD14	Q9BXL6	1004 aa		11.17	□□□□□ -0.62
SYNE2-217	ENST00000555022	RBM27	Q9P2N5	1060 aa	Known RBP	11.17	□□□□□ -0.62
SYNE2-217	ENST00000555022	ZNF608	Q9ULD9	1512 aa	Predicted RBP	11.17	□□□□□ -0.62
SYNE2-217	ENST00000555022	NASP	P49321	788 aa	Predicted RBP	11.16	□□□□□ -0.62
SYNE2-217	ENST00000555022	CAVIN1	Q6NZI2	390 aa	Known RBP	11.16	□□□□□ -0.62
SYNE2-217	ENST00000555022	IQGAP2	Q13576	1575 aa		11.16	□□□□□ -0.62
SYNE2-217	ENST00000555022	MSN	P26038	577 aa	Known RBP	11.16	□□□□□ -0.62
SYNE2-217	ENST00000555022	MCTP1	Q6DN14	999 aa		11.16	□□□□□ -0.62
SYNE2-217	ENST00000555022	SLC12A5	Q9H2X9	1139 aa		11.16	□□□□□ -0.62
SYNE2-217	ENST00000555022	TRAK1	Q9UPV9	953 aa		11.16	□□□□□ -0.62
SYNE2-217	ENST00000555022	COL17A1	Q9UMD9	1497 aa	Predicted RBP	11.16	□□□□□ -0.62
SYNE2-217	ENST00000555022	DTNB	O60941	627 aa		11.15	□□□□□ -0.62
SYNE2-217	ENST00000555022	EXOSC9	Q06265	439 aa	Known RBP	11.15	□□□□□ -0.62
SYNE2-217	ENST00000555022	PDE3A	Q14432	1141 aa		11.15	□□□□□ -0.62
SYNE2-217	ENST00000555022	PODXL2	Q9NZ53	605 aa		11.15	□□□□□ -0.62
SYNE2-217	ENST00000555022	KIF21A	Q7Z4S6	1674 aa		11.15	□□□□□ -0.62
SYNE2-217	ENST00000555022	TRO	Q12816	1431 aa	Predicted RBP	11.15	□□□□□ -0.62
SYNE2-217	ENST00000555022	A2M	P01023	1474 aa		11.15	□□□□□ -0.63
SYNE2-217	ENST00000555022	ANP32B	Q92688	251 aa	Known RBP	11.14	□□□□□ -0.63
SYNE2-217	ENST00000555022	ANKRD45	Q5TZF3	282 aa		11.14	□□□□□ -0.63
SYNE2-217	ENST00000555022	DZIP1L	Q8IYY4	767 aa	Known RBP	11.14	□□□□□ -0.63
SYNE2-217	ENST00000555022	DDX11L8	A8MPP1	907 aa		11.14	□□□□□ -0.63
SYNE2-217	ENST00000555022	MTHFS	P49914	203 aa		11.14	□□□□□ -0.63
SYNE2-217	ENST00000555022	NLRP1	Q9C000	1473 aa		11.14	□□□□□ -0.63
SYNE2-217	ENST00000555022	PKP1	Q13835	747 aa		11.13	□□□□□ -0.63
SYNE2-217	ENST00000555022	TMEM132E	Q6IEE7	984 aa		11.13	□□□□□ -0.63
SYNE2-217	ENST00000555022	GAS2L2	Q8NHY3	880 aa		11.13	□□□□□ -0.63

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