RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 IFT140Q96RY7 1462 aa12.02□□□□□ -0.49
SIX4-202ENST00000554079 SLC20A2Q08357 652 aa12.01□□□□□ -0.49
SIX4-202ENST00000554079 USP47Q96K76 1375 aa12.01□□□□□ -0.49
SIX4-202ENST00000554079 PDLIM2Q96JY6 352 aa12.01□□□□□ -0.49
SIX4-202ENST00000554079 ZNF608Q9ULD9 1512 aaPredicted RBP12□□□□□ -0.49
SIX4-202ENST00000554079 SKOR2Q2VWA4 1001 aaPredicted RBP12□□□□□ -0.49
SIX4-202ENST00000554079 CGNQ9P2M7 1197 aaKnown RBP12□□□□□ -0.49
SIX4-202ENST00000554079 PARD3Q8TEW0 1356 aa12□□□□□ -0.49
SIX4-202ENST00000554079 CDK11BP21127 795 aaKnown RBP11.99□□□□□ -0.49
SIX4-202ENST00000554079 IRX5P78411 483 aaPredicted RBP11.99□□□□□ -0.49
SIX4-202ENST00000554079 MYRIPQ8NFW9 859 aa11.99□□□□□ -0.49
SIX4-202ENST00000554079 ZKSCAN5Q9Y2L8 839 aa11.99□□□□□ -0.49
SIX4-202ENST00000554079 ANKRD30BQ9BXX2 1392 aa11.99□□□□□ -0.49
SIX4-202ENST00000554079 MCM5P33992 734 aa11.99□□□□□ -0.49
SIX4-202ENST00000554079 NCBP3Q53F19 620 aaKnown RBP11.99□□□□□ -0.49
SIX4-202ENST00000554079 RGS22Q8NE09 1264 aa11.99□□□□□ -0.49
SIX4-202ENST00000554079 SHROOM2Q13796 1616 aa11.98□□□□□ -0.49
SIX4-202ENST00000554079 CASKIN1Q8WXD9 1431 aa11.98□□□□□ -0.49
SIX4-202ENST00000554079 IGHDP01880 384 aa11.98□□□□□ -0.49
SIX4-202ENST00000554079 DNTTIP2Q5QJE6 756 aaKnown RBP11.98□□□□□ -0.49
SIX4-202ENST00000554079 NLRP13Q86W25 1043 aa11.98□□□□□ -0.49
SIX4-202ENST00000554079 UPF2Q9HAU5 1272 aaKnown RBP11.98□□□□□ -0.49
SIX4-202ENST00000554079 SUPT6HQ7KZ85 1726 aaKnown RBP11.97□□□□□ -0.49
SIX4-202ENST00000554079 PTMSP20962 102 aa11.97□□□□□ -0.49
SIX4-202ENST00000554079 IRX3P78415 501 aaPredicted RBP11.97□□□□□ -0.49
SIX4-202ENST00000554079 TNPO1Q92973 898 aaKnown RBP11.97□□□□□ -0.49
SIX4-202ENST00000554079 POLR3GLQ9BT43 218 aa11.97□□□□□ -0.49
SIX4-202ENST00000554079 ARHGAP31Q2M1Z3 1444 aa11.97□□□□□ -0.49
SIX4-202ENST00000554079 GTF2F1P35269 517 aaKnown RBP eCLIP11.96□□□□□ -0.49
SIX4-202ENST00000554079 POLA1P09884 1462 aaPredicted RBP11.96□□□□□ -0.49
SIX4-202ENST00000554079 CLASP1Q7Z460 1538 aa11.96□□□□□ -0.49
SIX4-202ENST00000554079 MPHOSPH9Q99550 1183 aa11.96□□□□□ -0.5
SIX4-202ENST00000554079 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.95□□□□□ -0.5
SIX4-202ENST00000554079 JARID2Q92833 1246 aaPredicted RBP11.95□□□□□ -0.5
SIX4-202ENST00000554079 RNF216Q9NWF9 866 aaPredicted RBP11.95□□□□□ -0.5
SIX4-202ENST00000554079 HSP90AB1P08238 724 aaKnown RBP11.94□□□□□ -0.5
SIX4-202ENST00000554079 DUSP27Q5VZP5 1158 aa11.94□□□□□ -0.5
SIX4-202ENST00000554079 FGD5Q6ZNL6 1462 aa11.94□□□□□ -0.5
SIX4-202ENST00000554079 GBP4Q96PP9 640 aa11.94□□□□□ -0.5
SIX4-202ENST00000554079 DNAJC5Q9H3Z4 198 aa11.94□□□□□ -0.5
SIX4-202ENST00000554079 RAB3GAP1Q15042 981 aa11.93□□□□□ -0.5
SIX4-202ENST00000554079 CIZ1Q9ULV3 898 aaPredicted RBP11.93□□□□□ -0.5
SIX4-202ENST00000554079 AK9Q5TCS8 1911 aa11.93□□□□□ -0.5
SIX4-202ENST00000554079 RBM25P49756 843 aaKnown RBP11.93□□□□□ -0.5
SIX4-202ENST00000554079 ZNF445P59923 1031 aa11.93□□□□□ -0.5
SIX4-202ENST00000554079 NBPF1Q3BBV0 1214 aa11.93□□□□□ -0.5
SIX4-202ENST00000554079 DNAJC2Q99543 621 aaKnown RBP11.93□□□□□ -0.5
SIX4-202ENST00000554079 TCOF1Q13428 1488 aaKnown RBP11.92□□□□□ -0.5
SIX4-202ENST00000554079 TARBP1Q13395 1621 aaKnown RBP11.92□□□□□ -0.5
SIX4-202ENST00000554079 KIAA1107Q9UPP5 1409 aa11.92□□□□□ -0.5
SIX4-202ENST00000554079 DHX37Q8IY37 1157 aaKnown RBP11.92□□□□□ -0.5
SIX4-202ENST00000554079 TSC1Q92574 1164 aa11.92□□□□□ -0.5
SIX4-202ENST00000554079 EFCAB5A4FU69 1503 aa11.92□□□□□ -0.5
SIX4-202ENST00000554079 EPRSP07814 1512 aaKnown RBP11.92□□□□□ -0.5
SIX4-202ENST00000554079 RALGAPBQ86X10 1494 aa11.91□□□□□ -0.5
SIX4-202ENST00000554079 PRIMPOLQ96LW4 560 aa11.91□□□□□ -0.5
SIX4-202ENST00000554079 PLEKHH1Q9ULM0 1364 aa11.91□□□□□ -0.5
SIX4-202ENST00000554079 RAD54L2Q9Y4B4 1467 aa11.91□□□□□ -0.5
SIX4-202ENST00000554079 SMC5Q8IY18 1101 aa11.91□□□□□ -0.5
SIX4-202ENST00000554079 ARHGEF11O15085 1522 aa11.9□□□□□ -0.5
SIX4-202ENST00000554079 E9PSI1 815 aa11.9□□□□□ -0.5
SIX4-202ENST00000554079 HMGN5P82970 282 aaKnown RBP11.9□□□□□ -0.5
SIX4-202ENST00000554079 HSCBQ8IWL3 235 aa11.9□□□□□ -0.5
SIX4-202ENST00000554079 CHMP4AQ9BY43 222 aa11.9□□□□□ -0.5
SIX4-202ENST00000554079 ZNF521Q96K83 1311 aa11.9□□□□□ -0.5
SIX4-202ENST00000554079 GAPVD1Q14C86 1478 aa11.9□□□□□ -0.5
SIX4-202ENST00000554079 SNAPC4Q5SXM2 1469 aa11.9□□□□□ -0.5
SIX4-202ENST00000554079 UGGT2Q9NYU1 1516 aa11.9□□□□□ -0.5
SIX4-202ENST00000554079 IGSF3O75054 1194 aa11.89□□□□□ -0.51
SIX4-202ENST00000554079 KCNJ4P48050 445 aa11.89□□□□□ -0.51
SIX4-202ENST00000554079 KLHL40Q2TBA0 621 aa11.89□□□□□ -0.51
SIX4-202ENST00000554079 RRP7BPQ9NSQ0 103 aa11.89□□□□□ -0.51
SIX4-202ENST00000554079 CCDC39Q9UFE4 941 aa11.89□□□□□ -0.51
SIX4-202ENST00000554079 FHOD3Q2V2M9 1422 aa11.89□□□□□ -0.51
SIX4-202ENST00000554079 SPDYE4A6NLX3 237 aa11.89□□□□□ -0.51
SIX4-202ENST00000554079 AMER1Q5JTC6 1135 aaPredicted RBP11.89□□□□□ -0.51
SIX4-202ENST00000554079 ZNF771Q7L3S4 317 aaPredicted RBP11.89□□□□□ -0.51
SIX4-202ENST00000554079 C22orf23Q9BZE7 217 aa11.89□□□□□ -0.51
SIX4-202ENST00000554079 RBSNQ9H1K0 784 aa11.89□□□□□ -0.51
SIX4-202ENST00000554079 EIF4G3O43432 1585 aaKnown RBP11.88□□□□□ -0.51
SIX4-202ENST00000554079 MMP14P50281 582 aa11.88□□□□□ -0.51
SIX4-202ENST00000554079 NINLQ9Y2I6 1382 aa11.88□□□□□ -0.51
SIX4-202ENST00000554079 PLXNC1O60486 1568 aa11.88□□□□□ -0.51
SIX4-202ENST00000554079 MAPK8IP2Q13387 824 aaPredicted RBP11.87□□□□□ -0.51
SIX4-202ENST00000554079 EHBP1L1Q8N3D4 1523 aa11.87□□□□□ -0.51
SIX4-202ENST00000554079 TDRD9Q8NDG6 1382 aaKnown RBP11.87□□□□□ -0.51
SIX4-202ENST00000554079 TULP2O00295 520 aa11.87□□□□□ -0.51
SIX4-202ENST00000554079 GABPB1Q06547 395 aaPredicted RBP11.87□□□□□ -0.51
SIX4-202ENST00000554079 CLEC17AQ6ZS10 378 aa11.87□□□□□ -0.51
SIX4-202ENST00000554079 BCL2L12Q9HB09 334 aa11.87□□□□□ -0.51
SIX4-202ENST00000554079 CAPN2P17655 700 aa11.86□□□□□ -0.51
SIX4-202ENST00000554079 SNX21Q969T3 373 aa11.86□□□□□ -0.51
SIX4-202ENST00000554079 UHRF1BP1Q6BDS2 1440 aa11.86□□□□□ -0.51
SIX4-202ENST00000554079 CGNL1Q0VF96 1302 aa11.86□□□□□ -0.51
SIX4-202ENST00000554079 CERS3Q8IU89 383 aa11.86□□□□□ -0.51
SIX4-202ENST00000554079 PDCL2Q8N4E4 241 aa11.86□□□□□ -0.51
SIX4-202ENST00000554079 FAM135AQ9P2D6 1515 aa11.85□□□□□ -0.51
SIX4-202ENST00000554079 KIAA2012Q0VF49 1180 aa11.85□□□□□ -0.51
SIX4-202ENST00000554079 OSCARQ8IYS5 282 aa11.85□□□□□ -0.51
SIX4-202ENST00000554079 ANKRD7Q92527 254 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms