RNA–Protein interactions for RNA: ENST00000554040.5

ATXN3-224, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 592 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-224ENST00000554040 LHX6Q9UPM6 363 aa11.77□□□□□ -0.53
ATXN3-224ENST00000554040 ARHGEF40Q8TER5 1519 aa11.76□□□□□ -0.53
ATXN3-224ENST00000554040 CEBPAP49715 358 aaPredicted RBP11.76□□□□□ -0.53
ATXN3-224ENST00000554040 PLPP6Q8IY26 295 aa11.76□□□□□ -0.53
ATXN3-224ENST00000554040 PTCD2Q8WV60 388 aaKnown RBP11.76□□□□□ -0.53
ATXN3-224ENST00000554040 POTEEQ6S8J3 1075 aa11.75□□□□□ -0.53
ATXN3-224ENST00000554040 PRXQ9BXM0 1461 aa11.75□□□□□ -0.53
ATXN3-224ENST00000554040 GTPBP6O43824 516 aaPredicted RBP11.74□□□□□ -0.53
ATXN3-224ENST00000554040 MAGI2Q86UL8 1455 aa11.74□□□□□ -0.53
ATXN3-224ENST00000554040 CTTNBP2Q8WZ74 1663 aa11.72□□□□□ -0.53
ATXN3-224ENST00000554040 CRISPLD2Q9H0B8 497 aa11.72□□□□□ -0.53
ATXN3-224ENST00000554040 SPATA31D1Q6ZQQ2 1576 aa11.71□□□□□ -0.53
ATXN3-224ENST00000554040 ZFYVE16Q7Z3T8 1539 aa11.7□□□□□ -0.54
ATXN3-224ENST00000554040 PTPRTO14522 1441 aa11.7□□□□□ -0.54
ATXN3-224ENST00000554040 RYDENQ9NUL5 291 aaKnown RBP11.7□□□□□ -0.54
ATXN3-224ENST00000554040 EFCAB5A4FU69 1503 aa11.7□□□□□ -0.54
ATXN3-224ENST00000554040 RICTORQ6R327 1708 aa11.69□□□□□ -0.54
ATXN3-224ENST00000554040 NCKAP5LQ9HCH0 1330 aa11.69□□□□□ -0.54
ATXN3-224ENST00000554040 TTC37Q6PGP7 1564 aa11.69□□□□□ -0.54
ATXN3-224ENST00000554040 ZMYM4Q5VZL5 1548 aa11.69□□□□□ -0.54
ATXN3-224ENST00000554040 NUP153P49790 1475 aaKnown RBP11.69□□□□□ -0.54
ATXN3-224ENST00000554040 ARHGEF12Q9NZN5 1544 aa11.68□□□□□ -0.54
ATXN3-224ENST00000554040 ATP10AO60312 1499 aa11.68□□□□□ -0.54
ATXN3-224ENST00000554040 UHRF1BP1Q6BDS2 1440 aa11.68□□□□□ -0.54
ATXN3-224ENST00000554040 SCAPERQ9BY12 1400 aa11.68□□□□□ -0.54
ATXN3-224ENST00000554040 LSM11P83369 360 aaKnown RBP eCLIP11.67□□□□□ -0.54
ATXN3-224ENST00000554040 RAPGEF6Q8TEU7 1601 aa11.67□□□□□ -0.54
ATXN3-224ENST00000554040 SIGLEC1Q9BZZ2 1709 aa11.66□□□□□ -0.54
ATXN3-224ENST00000554040 SETD1BQ9UPS6 1966 aaKnown RBP11.66□□□□□ -0.54
ATXN3-224ENST00000554040 STRCQ7RTU9 1775 aa11.66□□□□□ -0.54
ATXN3-224ENST00000554040 AXIN2Q9Y2T1 843 aa11.65□□□□□ -0.54
ATXN3-224ENST00000554040 C9orf84Q5VXU9 1444 aa11.65□□□□□ -0.54
ATXN3-224ENST00000554040 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.65□□□□□ -0.55
ATXN3-224ENST00000554040 HECW1Q76N89 1606 aa11.64□□□□□ -0.55
ATXN3-224ENST00000554040 IQSEC2Q5JU85 1478 aa11.64□□□□□ -0.55
ATXN3-224ENST00000554040 PBX2P40425 430 aa11.64□□□□□ -0.55
ATXN3-224ENST00000554040 EFCAB2Q5VUJ9 269 aa11.64□□□□□ -0.55
ATXN3-224ENST00000554040 ANKRD13DQ6ZTN6 518 aa11.64□□□□□ -0.55
ATXN3-224ENST00000554040 OXER1Q8TDS5 423 aa11.64□□□□□ -0.55
ATXN3-224ENST00000554040 RNF166Q96A37 237 aaPredicted RBP11.64□□□□□ -0.55
ATXN3-224ENST00000554040 MYT1LQ9UL68 1186 aa11.64□□□□□ -0.55
ATXN3-224ENST00000554040 FER1L4A9Z1Z3 1794 aa11.64□□□□□ -0.55
ATXN3-224ENST00000554040 PLCH2O75038 1416 aa11.63□□□□□ -0.55
ATXN3-224ENST00000554040 PREX1Q8TCU6 1659 aa11.63□□□□□ -0.55
ATXN3-224ENST00000554040 RANGAP1P46060 587 aaPredicted RBP11.63□□□□□ -0.55
ATXN3-224ENST00000554040 LTBP4Q8N2S1 1624 aa11.63□□□□□ -0.55
ATXN3-224ENST00000554040 SAMD9Q5K651 1589 aa11.62□□□□□ -0.55
ATXN3-224ENST00000554040 CFAP74Q9C0B2 1584 aa11.62□□□□□ -0.55
ATXN3-224ENST00000554040 UBAP1LF5GYI3 381 aa11.62□□□□□ -0.55
ATXN3-224ENST00000554040 PPP1R15BQ5SWA1 713 aa11.62□□□□□ -0.55
ATXN3-224ENST00000554040 AFAP1Q8N556 730 aa11.61□□□□□ -0.55
ATXN3-224ENST00000554040 TRAPPC8Q9Y2L5 1435 aa11.6□□□□□ -0.55
ATXN3-224ENST00000554040 ESF1Q9H501 851 aaKnown RBP11.59□□□□□ -0.55
ATXN3-224ENST00000554040 PSDA5PKW4 1024 aaPredicted RBP11.58□□□□□ -0.56
ATXN3-224ENST00000554040 PTGER2P43116 358 aa11.58□□□□□ -0.56
ATXN3-224ENST00000554040 NCOA1Q15788 1441 aa11.58□□□□□ -0.56
ATXN3-224ENST00000554040 PDE4AP27815 886 aa11.57□□□□□ -0.56
ATXN3-224ENST00000554040 UPF1Q92900 1129 aaKnown RBP eCLIP11.57□□□□□ -0.56
ATXN3-224ENST00000554040 ARHGAP33O14559 1287 aa11.56□□□□□ -0.56
ATXN3-224ENST00000554040 TBC1D12O60347 775 aa11.56□□□□□ -0.56
ATXN3-224ENST00000554040 CADPS2Q86UW7 1296 aa11.56□□□□□ -0.56
ATXN3-224ENST00000554040 ZNF335Q9H4Z2 1342 aaPredicted RBP11.56□□□□□ -0.56
ATXN3-224ENST00000554040 MFSD10Q14728 455 aa11.55□□□□□ -0.56
ATXN3-224ENST00000554040 DMRTA1Q5VZB9 504 aa11.54□□□□□ -0.56
ATXN3-224ENST00000554040 ZNF518AQ6AHZ1 1483 aa11.54□□□□□ -0.56
ATXN3-224ENST00000554040 PSEN2P49810 448 aa11.53□□□□□ -0.56
ATXN3-224ENST00000554040 LARP6Q9BRS8 491 aaKnown RBP11.53□□□□□ -0.56
ATXN3-224ENST00000554040 CDK11AQ9UQ88 783 aaPredicted RBP11.53□□□□□ -0.56
ATXN3-224ENST00000554040 HSPA1LP34931 641 aa11.52□□□□□ -0.57
ATXN3-224ENST00000554040 PPP4R3BQ5MIZ7 849 aa11.51□□□□□ -0.57
ATXN3-224ENST00000554040 ADGRD1Q6QNK2 874 aa11.51□□□□□ -0.57
ATXN3-224ENST00000554040 DDX27Q96GQ7 796 aaKnown RBP11.51□□□□□ -0.57
ATXN3-224ENST00000554040 ATP1B4Q9UN42 357 aaPredicted RBP11.51□□□□□ -0.57
ATXN3-224ENST00000554040 CNTLNQ9NXG0 1405 aa11.51□□□□□ -0.57
ATXN3-224ENST00000554040 CDK13Q14004 1512 aaKnown RBP11.5□□□□□ -0.57
ATXN3-224ENST00000554040 MLH3Q9UHC1 1453 aa11.5□□□□□ -0.57
ATXN3-224ENST00000554040 TOM1O60784 492 aa11.49□□□□□ -0.57
ATXN3-224ENST00000554040 ANO8Q9HCE9 1232 aaPredicted RBP11.49□□□□□ -0.57
ATXN3-224ENST00000554040 ZMYM3Q14202 1370 aa11.49□□□□□ -0.57
ATXN3-224ENST00000554040 AGLP35573 1532 aa11.49□□□□□ -0.57
ATXN3-224ENST00000554040 KDM5CP41229 1560 aa11.49□□□□□ -0.57
ATXN3-224ENST00000554040 HRO43593 1189 aa11.48□□□□□ -0.57
ATXN3-224ENST00000554040 PIP4K2BP78356 416 aa11.48□□□□□ -0.57
ATXN3-224ENST00000554040 EMILIN3Q9NT22 766 aa11.48□□□□□ -0.57
ATXN3-224ENST00000554040 NPATQ14207 1427 aa11.48□□□□□ -0.57
ATXN3-224ENST00000554040 REREQ9P2R6 1566 aa11.48□□□□□ -0.57
ATXN3-224ENST00000554040 CAMSAP1Q5T5Y3 1602 aa11.48□□□□□ -0.57
ATXN3-224ENST00000554040 C3P01024 1663 aa11.47□□□□□ -0.57
ATXN3-224ENST00000554040 DIP2CQ9Y2E4 1556 aa11.46□□□□□ -0.57
ATXN3-224ENST00000554040 TK2O00142 265 aa11.46□□□□□ -0.57
ATXN3-224ENST00000554040 FOSBP53539 338 aa11.46□□□□□ -0.57
ATXN3-224ENST00000554040 ARHGAP5Q13017 1502 aa11.45□□□□□ -0.58
ATXN3-224ENST00000554040 EVI5O60447 810 aa11.44□□□□□ -0.58
ATXN3-224ENST00000554040 ZNF454Q8N9F8 522 aa11.44□□□□□ -0.58
ATXN3-224ENST00000554040 KCNK17Q96T54 332 aa11.44□□□□□ -0.58
ATXN3-224ENST00000554040 PLA2R1Q13018 1463 aa11.44□□□□□ -0.58
ATXN3-224ENST00000554040 TROQ12816 1431 aaPredicted RBP11.43□□□□□ -0.58
ATXN3-224ENST00000554040 MED1Q15648 1581 aaPredicted RBP11.43□□□□□ -0.58
ATXN3-224ENST00000554040 TCOF1Q13428 1488 aaKnown RBP11.43□□□□□ -0.58
ATXN3-224ENST00000554040 BBXQ8WY36 941 aaPredicted RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms