RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 NOS1P29475 1434 aa13.63□□□□□ -0.23
TDP1-208ENST00000553989 ANKRD50Q9ULJ7 1429 aa13.63□□□□□ -0.23
TDP1-208ENST00000553989 PPP1R15AO75807 674 aaPredicted RBP13.62□□□□□ -0.23
TDP1-208ENST00000553989 KCNA6P17658 529 aa13.62□□□□□ -0.23
TDP1-208ENST00000553989 PROSER2Q86WR7 435 aaPredicted RBP13.62□□□□□ -0.23
TDP1-208ENST00000553989 SLC52A1Q9NWF4 448 aa13.62□□□□□ -0.23
TDP1-208ENST00000553989 RBM33Q96EV2 1170 aaKnown RBP13.61□□□□□ -0.23
TDP1-208ENST00000553989 XIRP1Q702N8 1843 aaKnown RBP13.61□□□□□ -0.23
TDP1-208ENST00000553989 RPRD2Q5VT52 1461 aaKnown RBP13.6□□□□□ -0.23
TDP1-208ENST00000553989 CHGAP10645 457 aaKnown RBP13.59□□□□□ -0.23
TDP1-208ENST00000553989 FAM135BQ49AJ0 1406 aa13.58□□□□□ -0.24
TDP1-208ENST00000553989 HDGFP51858 240 aaKnown RBP13.58□□□□□ -0.24
TDP1-208ENST00000553989 NKTRP30414 1462 aaKnown RBP13.58□□□□□ -0.24
TDP1-208ENST00000553989 MSH6P52701 1360 aa13.58□□□□□ -0.24
TDP1-208ENST00000553989 TET3O43151 1660 aa13.57□□□□□ -0.24
TDP1-208ENST00000553989 RIMS2Q9UQ26 1411 aa13.56□□□□□ -0.24
TDP1-208ENST00000553989 NWD1Q149M9 1564 aa13.56□□□□□ -0.24
TDP1-208ENST00000553989 GCC2Q8IWJ2 1684 aa13.56□□□□□ -0.24
TDP1-208ENST00000553989 ROBO1Q9Y6N7 1651 aa13.56□□□□□ -0.24
TDP1-208ENST00000553989 C14orf37Q86TY3 774 aa13.55□□□□□ -0.24
TDP1-208ENST00000553989 PLEKHG1Q9ULL1 1385 aa13.55□□□□□ -0.24
TDP1-208ENST00000553989 ZFYVE9O95405 1425 aa13.54□□□□□ -0.24
TDP1-208ENST00000553989 UNC13BO14795 1591 aa13.54□□□□□ -0.24
TDP1-208ENST00000553989 MYO5BQ9ULV0 1848 aa13.53□□□□□ -0.24
TDP1-208ENST00000553989 ITGAEP38570 1179 aa13.53□□□□□ -0.24
TDP1-208ENST00000553989 NUTM2DQ5VT03 806 aaPredicted RBP13.53□□□□□ -0.24
TDP1-208ENST00000553989 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.52□□□□□ -0.25
TDP1-208ENST00000553989 TMEM131LA2VDJ0 1609 aa13.52□□□□□ -0.25
TDP1-208ENST00000553989 SLAIN2Q9P270 581 aa13.51□□□□□ -0.25
TDP1-208ENST00000553989 RGS17Q9UGC6 210 aaPredicted RBP13.51□□□□□ -0.25
TDP1-208ENST00000553989 ROCK1Q13464 1354 aa13.5□□□□□ -0.25
TDP1-208ENST00000553989 E9PCH4 1651 aa13.5□□□□□ -0.25
TDP1-208ENST00000553989 NUP155O75694 1391 aa13.49□□□□□ -0.25
TDP1-208ENST00000553989 ZBTB22O15209 634 aa13.49□□□□□ -0.25
TDP1-208ENST00000553989 PHLPP1O60346 1717 aa13.49□□□□□ -0.25
TDP1-208ENST00000553989 TBX22Q9Y458 520 aa13.48□□□□□ -0.25
TDP1-208ENST00000553989 IQGAP3Q86VI3 1631 aa13.48□□□□□ -0.25
TDP1-208ENST00000553989 CHD2O14647 1828 aaKnown RBP13.48□□□□□ -0.25
TDP1-208ENST00000553989 PPARGC1BQ86YN6 1023 aaKnown RBP13.47□□□□□ -0.25
TDP1-208ENST00000553989 JCADQ9P266 1359 aa13.46□□□□□ -0.25
TDP1-208ENST00000553989 DIP2AQ14689 1571 aa13.46□□□□□ -0.25
TDP1-208ENST00000553989 ATF3P18847 181 aa13.46□□□□□ -0.25
TDP1-208ENST00000553989 POTEAQ6S8J7 498 aa13.46□□□□□ -0.25
TDP1-208ENST00000553989 ADAMTS13Q76LX8 1427 aa13.46□□□□□ -0.26
TDP1-208ENST00000553989 CADPS2Q86UW7 1296 aa13.45□□□□□ -0.26
TDP1-208ENST00000553989 NCOA3Q9Y6Q9 1424 aa13.45□□□□□ -0.26
TDP1-208ENST00000553989 TRPM2O94759 1503 aa13.44□□□□□ -0.26
TDP1-208ENST00000553989 ZNF326Q5BKZ1 582 aaKnown RBP13.44□□□□□ -0.26
TDP1-208ENST00000553989 MEX3CQ5U5Q3 659 aaKnown RBP13.44□□□□□ -0.26
TDP1-208ENST00000553989 PIK3R4Q99570 1358 aa13.44□□□□□ -0.26
TDP1-208ENST00000553989 MAPK8IP2Q13387 824 aaPredicted RBP13.43□□□□□ -0.26
TDP1-208ENST00000553989 AMOTL2Q9Y2J4 779 aa13.43□□□□□ -0.26
TDP1-208ENST00000553989 C19orf44Q9H6X5 657 aa13.42□□□□□ -0.26
TDP1-208ENST00000553989 COL16A1Q07092 1604 aaPredicted RBP13.42□□□□□ -0.26
TDP1-208ENST00000553989 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.41□□□□□ -0.26
TDP1-208ENST00000553989 SPATA31A6Q5VVP1 1343 aa13.39□□□□□ -0.27
TDP1-208ENST00000553989 SPHKAPQ2M3C7 1700 aa13.39□□□□□ -0.27
TDP1-208ENST00000553989 PTPRUQ92729 1446 aa13.39□□□□□ -0.27
TDP1-208ENST00000553989 AHDC1Q5TGY3 1603 aaPredicted RBP13.38□□□□□ -0.27
TDP1-208ENST00000553989 SETD1AO15047 1707 aaKnown RBP13.37□□□□□ -0.27
TDP1-208ENST00000553989 RNF216Q9NWF9 866 aaPredicted RBP13.37□□□□□ -0.27
TDP1-208ENST00000553989 LRP6O75581 1613 aa13.37□□□□□ -0.27
TDP1-208ENST00000553989 NUTM2BA6NNL0 878 aaPredicted RBP13.36□□□□□ -0.27
TDP1-208ENST00000553989 NUTM2EB1AL46 878 aaPredicted RBP13.36□□□□□ -0.27
TDP1-208ENST00000553989 ZNF772Q68DY9 489 aaPredicted RBP13.36□□□□□ -0.27
TDP1-208ENST00000553989 BRINP3Q76B58 766 aa13.36□□□□□ -0.27
TDP1-208ENST00000553989 NUTM2AQ8IVF1 878 aaPredicted RBP13.36□□□□□ -0.27
TDP1-208ENST00000553989 DCCP43146 1447 aa13.36□□□□□ -0.27
TDP1-208ENST00000553989 SETBP1Q9Y6X0 1596 aa13.36□□□□□ -0.27
TDP1-208ENST00000553989 FOXD4L1Q9NU39 408 aa13.35□□□□□ -0.27
TDP1-208ENST00000553989 NRXN3Q9Y4C0 1643 aa13.35□□□□□ -0.27
TDP1-208ENST00000553989 SHPRHQ149N8 1683 aa13.34□□□□□ -0.27
TDP1-208ENST00000553989 ASXL1Q8IXJ9 1541 aa13.34□□□□□ -0.27
TDP1-208ENST00000553989 XRN1Q8IZH2 1706 aaKnown RBP13.34□□□□□ -0.27
TDP1-208ENST00000553989 TRIM52Q96A61 297 aa13.34□□□□□ -0.27
TDP1-208ENST00000553989 METP08581 1390 aa13.33□□□□□ -0.27
TDP1-208ENST00000553989 CLTCL1P53675 1640 aa13.33□□□□□ -0.28
TDP1-208ENST00000553989 MST1RQ04912 1400 aa13.31□□□□□ -0.28
TDP1-208ENST00000553989 NEXMIFQ5QGS0 1516 aa13.31□□□□□ -0.28
TDP1-208ENST00000553989 ADGRL3Q9HAR2 1447 aa13.3□□□□□ -0.28
TDP1-208ENST00000553989 KIF1BO60333 1816 aa13.3□□□□□ -0.28
TDP1-208ENST00000553989 RRBP1Q9P2E9 1410 aaKnown RBP13.3□□□□□ -0.28
TDP1-208ENST00000553989 RXRBP28702 533 aa13.29□□□□□ -0.28
TDP1-208ENST00000553989 LRRC59Q96AG4 307 aaKnown RBP13.29□□□□□ -0.28
TDP1-208ENST00000553989 NAIPQ13075 1403 aa13.29□□□□□ -0.28
TDP1-208ENST00000553989 DDX17Q92841 729 aaKnown RBP13.28□□□□□ -0.28
TDP1-208ENST00000553989 AFF2P51816 1311 aa13.28□□□□□ -0.28
TDP1-208ENST00000553989 SETD5Q9C0A6 1442 aa13.28□□□□□ -0.28
TDP1-208ENST00000553989 NHSL1Q5SYE7 1610 aa13.28□□□□□ -0.28
TDP1-208ENST00000553989 NALCNQ8IZF0 1738 aa13.27□□□□□ -0.28
TDP1-208ENST00000553989 VGFO15240 615 aaPredicted RBP13.27□□□□□ -0.29
TDP1-208ENST00000553989 C8orf37Q96NL8 207 aa13.27□□□□□ -0.29
TDP1-208ENST00000553989 PTCH1Q13635 1447 aa13.25□□□□□ -0.29
TDP1-208ENST00000553989 C1orf167Q5SNV9 1468 aa13.24□□□□□ -0.29
TDP1-208ENST00000553989 HFM1A2PYH4 1435 aa13.24□□□□□ -0.29
TDP1-208ENST00000553989 PNPLA6Q8IY17 1366 aa13.24□□□□□ -0.29
TDP1-208ENST00000553989 UPF1Q92900 1129 aaKnown RBP eCLIP13.24□□□□□ -0.29
TDP1-208ENST00000553989 ROBO2Q9HCK4 1378 aa13.23□□□□□ -0.29
TDP1-208ENST00000553989 RPGRIP1LQ68CZ1 1315 aa13.23□□□□□ -0.29
TDP1-208ENST00000553989 ADAMTS2O95450 1211 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms