RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 NOS1P29475 1434 aa18.32■□□□□ 0.52
SRP54-203ENST00000553544 KDM5AP29375 1690 aaKnown RBP18.32■□□□□ 0.52
SRP54-203ENST00000553544 C14orf37Q86TY3 774 aa18.32■□□□□ 0.52
SRP54-203ENST00000553544 TBX22Q9Y458 520 aa18.32■□□□□ 0.52
SRP54-203ENST00000553544 MEX3CQ5U5Q3 659 aaKnown RBP18.31■□□□□ 0.52
SRP54-203ENST00000553544 ZNF772Q68DY9 489 aaPredicted RBP18.31■□□□□ 0.52
SRP54-203ENST00000553544 PTPN23Q9H3S7 1636 aa18.3■□□□□ 0.52
SRP54-203ENST00000553544 SPATA31A6Q5VVP1 1343 aa18.29■□□□□ 0.52
SRP54-203ENST00000553544 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.29■□□□□ 0.52
SRP54-203ENST00000553544 PLEKHG1Q9ULL1 1385 aa18.29■□□□□ 0.52
SRP54-203ENST00000553544 ATF3P18847 181 aa18.28■□□□□ 0.52
SRP54-203ENST00000553544 CADPS2Q86UW7 1296 aa18.28■□□□□ 0.52
SRP54-203ENST00000553544 C19orf44Q9H6X5 657 aa18.28■□□□□ 0.52
SRP54-203ENST00000553544 FGD6Q6ZV73 1430 aa18.28■□□□□ 0.52
SRP54-203ENST00000553544 NCOA3Q9Y6Q9 1424 aa18.28■□□□□ 0.52
SRP54-203ENST00000553544 CHGAP10645 457 aaKnown RBP18.26■□□□□ 0.51
SRP54-203ENST00000553544 UPF1Q92900 1129 aaKnown RBP eCLIP18.26■□□□□ 0.51
SRP54-203ENST00000553544 RIMS2Q9UQ26 1411 aa18.25■□□□□ 0.51
SRP54-203ENST00000553544 ADGRB3O60242 1522 aa18.25■□□□□ 0.51
SRP54-203ENST00000553544 NWD1Q149M9 1564 aa18.25■□□□□ 0.51
SRP54-203ENST00000553544 PHLPP1O60346 1717 aa18.24■□□□□ 0.51
SRP54-203ENST00000553544 TRIM52Q96A61 297 aa18.24■□□□□ 0.51
SRP54-203ENST00000553544 ZFYVE9O95405 1425 aa18.23■□□□□ 0.51
SRP54-203ENST00000553544 RXRBP28702 533 aa18.23■□□□□ 0.51
SRP54-203ENST00000553544 RPRD2Q5VT52 1461 aaKnown RBP18.22■□□□□ 0.51
SRP54-203ENST00000553544 FAM50AQ14320 339 aaKnown RBP18.21■□□□□ 0.51
SRP54-203ENST00000553544 NUTM2DQ5VT03 806 aaPredicted RBP18.21■□□□□ 0.51
SRP54-203ENST00000553544 ANKRD50Q9ULJ7 1429 aa18.2■□□□□ 0.5
SRP54-203ENST00000553544 AMOTL2Q9Y2J4 779 aa18.19■□□□□ 0.5
SRP54-203ENST00000553544 PIK3R4Q99570 1358 aa18.18■□□□□ 0.5
SRP54-203ENST00000553544 NUTM2BA6NNL0 878 aaPredicted RBP18.18■□□□□ 0.5
SRP54-203ENST00000553544 NUTM2EB1AL46 878 aaPredicted RBP18.18■□□□□ 0.5
SRP54-203ENST00000553544 NUTM2AQ8IVF1 878 aaPredicted RBP18.18■□□□□ 0.5
SRP54-203ENST00000553544 CHD2O14647 1828 aaKnown RBP18.18■□□□□ 0.5
SRP54-203ENST00000553544 ADGRL2O95490 1459 aa18.16■□□□□ 0.5
SRP54-203ENST00000553544 BRINP3Q76B58 766 aa18.16■□□□□ 0.5
SRP54-203ENST00000553544 LRP6O75581 1613 aa18.16■□□□□ 0.5
SRP54-203ENST00000553544 COL16A1Q07092 1604 aaPredicted RBP18.16■□□□□ 0.5
SRP54-203ENST00000553544 SETD1AO15047 1707 aaKnown RBP18.14■□□□□ 0.49
SRP54-203ENST00000553544 ADAMTS13Q76LX8 1427 aa18.14■□□□□ 0.49
SRP54-203ENST00000553544 LRRC59Q96AG4 307 aaKnown RBP18.13■□□□□ 0.49
SRP54-203ENST00000553544 TMEM131LA2VDJ0 1609 aa18.12■□□□□ 0.49
SRP54-203ENST00000553544 AFF2P51816 1311 aa18.11■□□□□ 0.49
SRP54-203ENST00000553544 AHDC1Q5TGY3 1603 aaPredicted RBP18.1■□□□□ 0.49
SRP54-203ENST00000553544 QTRT2Q9H974 415 aaKnown RBP18.1■□□□□ 0.49
SRP54-203ENST00000553544 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.09■□□□□ 0.49
SRP54-203ENST00000553544 MYO5BQ9ULV0 1848 aa18.07■□□□□ 0.48
SRP54-203ENST00000553544 RBM6P78332 1123 aaKnown RBP18.07■□□□□ 0.48
SRP54-203ENST00000553544 C8orf37Q96NL8 207 aa18.07■□□□□ 0.48
SRP54-203ENST00000553544 DIP2AQ14689 1571 aa18.07■□□□□ 0.48
SRP54-203ENST00000553544 CDK12Q9NYV4 1490 aaPredicted RBP18.07■□□□□ 0.48
SRP54-203ENST00000553544 GCC2Q8IWJ2 1684 aa18.06■□□□□ 0.48
SRP54-203ENST00000553544 PTPRUQ92729 1446 aa18.06■□□□□ 0.48
SRP54-203ENST00000553544 SETD5Q9C0A6 1442 aa18.06■□□□□ 0.48
SRP54-203ENST00000553544 SHPRHQ149N8 1683 aa18.06■□□□□ 0.48
SRP54-203ENST00000553544 DCCP43146 1447 aa18.05■□□□□ 0.48
SRP54-203ENST00000553544 NUP155O75694 1391 aa18.04■□□□□ 0.48
SRP54-203ENST00000553544 TRPM2O94759 1503 aa18.04■□□□□ 0.48
SRP54-203ENST00000553544 ZNF326Q5BKZ1 582 aaKnown RBP18.04■□□□□ 0.48
SRP54-203ENST00000553544 PPARGC1BQ86YN6 1023 aaKnown RBP18.03■□□□□ 0.48
SRP54-203ENST00000553544 NGLY1Q96IV0 654 aa18.03■□□□□ 0.48
SRP54-203ENST00000553544 DDX17Q92841 729 aaKnown RBP18.01■□□□□ 0.47
SRP54-203ENST00000553544 MST1RQ04912 1400 aa18■□□□□ 0.47
SRP54-203ENST00000553544 ASXL1Q8IXJ9 1541 aa18■□□□□ 0.47
SRP54-203ENST00000553544 ROCK1Q13464 1354 aa18■□□□□ 0.47
SRP54-203ENST00000553544 SRCAPQ6ZRS2 3230 aa17.99■□□□□ 0.47
SRP54-203ENST00000553544 ADAMTS2O95450 1211 aa17.99■□□□□ 0.47
SRP54-203ENST00000553544 FOXD1Q16676 465 aa17.98■□□□□ 0.47
SRP54-203ENST00000553544 METP08581 1390 aa17.98■□□□□ 0.47
SRP54-203ENST00000553544 E9PCH4 1651 aa17.97■□□□□ 0.47
SRP54-203ENST00000553544 UNC13BO14795 1591 aa17.97■□□□□ 0.47
SRP54-203ENST00000553544 PNPLA6Q8IY17 1366 aa17.97■□□□□ 0.47
SRP54-203ENST00000553544 ITGAEP38570 1179 aa17.96■□□□□ 0.47
SRP54-203ENST00000553544 USP21Q9UK80 565 aa17.95■□□□□ 0.46
SRP54-203ENST00000553544 TRPC5Q9UL62 973 aaPredicted RBP17.94■□□□□ 0.46
SRP54-203ENST00000553544 RGS12O14924 1447 aa17.94■□□□□ 0.46
SRP54-203ENST00000553544 RRBP1Q9P2E9 1410 aaKnown RBP17.93■□□□□ 0.46
SRP54-203ENST00000553544 ADGRL3Q9HAR2 1447 aa17.92■□□□□ 0.46
SRP54-203ENST00000553544 IQGAP3Q86VI3 1631 aa17.92■□□□□ 0.46
SRP54-203ENST00000553544 ATAD2Q6PL18 1390 aa17.91■□□□□ 0.46
SRP54-203ENST00000553544 SETBP1Q9Y6X0 1596 aa17.91■□□□□ 0.46
SRP54-203ENST00000553544 FNBP4Q8N3X1 1017 aaPredicted RBP17.91■□□□□ 0.46
SRP54-203ENST00000553544 ORAI2Q96SN7 254 aa17.91■□□□□ 0.46
SRP54-203ENST00000553544 ZRANB1Q9UGI0 708 aa17.91■□□□□ 0.46
SRP54-203ENST00000553544 SOS2Q07890 1332 aaPredicted RBP17.91■□□□□ 0.46
SRP54-203ENST00000553544 VGFO15240 615 aaPredicted RBP17.9■□□□□ 0.46
SRP54-203ENST00000553544 C1orf167Q5SNV9 1468 aa17.89■□□□□ 0.45
SRP54-203ENST00000553544 NHSL1Q5SYE7 1610 aa17.89■□□□□ 0.45
SRP54-203ENST00000553544 XRN1Q8IZH2 1706 aaKnown RBP17.89■□□□□ 0.45
SRP54-203ENST00000553544 CCDC125Q86Z20 511 aa17.88■□□□□ 0.45
SRP54-203ENST00000553544 NRXN3Q9Y4C0 1643 aa17.87■□□□□ 0.45
SRP54-203ENST00000553544 PTCH1Q13635 1447 aa17.84■□□□□ 0.45
SRP54-203ENST00000553544 ROBO2Q9HCK4 1378 aa17.82■□□□□ 0.44
SRP54-203ENST00000553544 ESCO1Q5FWF5 840 aa17.82■□□□□ 0.44
SRP54-203ENST00000553544 RPGRIP1LQ68CZ1 1315 aa17.81■□□□□ 0.44
SRP54-203ENST00000553544 NPHP3Q7Z494 1330 aa17.8■□□□□ 0.44
SRP54-203ENST00000553544 GJD4Q96KN9 370 aaPredicted RBP17.8■□□□□ 0.44
SRP54-203ENST00000553544 ATRNO75882 1429 aa17.8■□□□□ 0.44
SRP54-203ENST00000553544 NEXMIFQ5QGS0 1516 aa17.78■□□□□ 0.44
SRP54-203ENST00000553544 FOXO3O43524 673 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms