RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TMEM2Q9UHN6 1383 aa10.92□□□□□ -0.66
LIMA1-216ENST00000552909 MPHOSPH9Q99550 1183 aa10.92□□□□□ -0.66
LIMA1-216ENST00000552909 SENP3Q9H4L4 574 aaPredicted RBP10.92□□□□□ -0.66
LIMA1-216ENST00000552909 ZNF335Q9H4Z2 1342 aaPredicted RBP10.92□□□□□ -0.66
LIMA1-216ENST00000552909 ARHGAP23Q9P227 1491 aa10.91□□□□□ -0.66
LIMA1-216ENST00000552909 SLIT1O75093 1534 aa10.91□□□□□ -0.66
LIMA1-216ENST00000552909 SPHKAPQ2M3C7 1700 aa10.91□□□□□ -0.66
LIMA1-216ENST00000552909 ADGRB3O60242 1522 aa10.9□□□□□ -0.66
LIMA1-216ENST00000552909 TMEM131LA2VDJ0 1609 aa10.9□□□□□ -0.66
LIMA1-216ENST00000552909 MED14O60244 1454 aa10.9□□□□□ -0.66
LIMA1-216ENST00000552909 NPHP4O75161 1426 aaPredicted RBP10.9□□□□□ -0.66
LIMA1-216ENST00000552909 NUTM2DQ5VT03 806 aaPredicted RBP10.9□□□□□ -0.66
LIMA1-216ENST00000552909 SCAF11Q99590 1463 aaKnown RBP10.89□□□□□ -0.67
LIMA1-216ENST00000552909 KDM5AP29375 1690 aaKnown RBP10.89□□□□□ -0.67
LIMA1-216ENST00000552909 EID1Q9Y6B2 187 aa10.89□□□□□ -0.67
LIMA1-216ENST00000552909 IQGAP1P46940 1657 aa10.87□□□□□ -0.67
LIMA1-216ENST00000552909 CERKQ8TCT0 537 aa10.87□□□□□ -0.67
LIMA1-216ENST00000552909 LTBP4Q8N2S1 1624 aa10.87□□□□□ -0.67
LIMA1-216ENST00000552909 CLTCL1P53675 1640 aa10.87□□□□□ -0.67
LIMA1-216ENST00000552909 ZFYVE9O95405 1425 aa10.87□□□□□ -0.67
LIMA1-216ENST00000552909 TRPM2O94759 1503 aa10.87□□□□□ -0.67
LIMA1-216ENST00000552909 SLC26A8Q96RN1 970 aa10.86□□□□□ -0.67
LIMA1-216ENST00000552909 RIMS2Q9UQ26 1411 aa10.86□□□□□ -0.67
LIMA1-216ENST00000552909 ZNF326Q5BKZ1 582 aaKnown RBP10.84□□□□□ -0.67
LIMA1-216ENST00000552909 ILDR1Q86SU0 546 aaPredicted RBP10.84□□□□□ -0.67
LIMA1-216ENST00000552909 PPP1R15AO75807 674 aaPredicted RBP10.83□□□□□ -0.68
LIMA1-216ENST00000552909 BCANQ96GW7 911 aa10.83□□□□□ -0.68
LIMA1-216ENST00000552909 PRKCSHP14314 528 aaPredicted RBP10.83□□□□□ -0.68
LIMA1-216ENST00000552909 STRCP1A6NGW2 1772 aa10.83□□□□□ -0.68
LIMA1-216ENST00000552909 KIF1BO60333 1816 aa10.82□□□□□ -0.68
LIMA1-216ENST00000552909 HDGFP51858 240 aaKnown RBP10.82□□□□□ -0.68
LIMA1-216ENST00000552909 PLEKHG1Q9ULL1 1385 aa10.81□□□□□ -0.68
LIMA1-216ENST00000552909 RGL3Q3MIN7 710 aa10.81□□□□□ -0.68
LIMA1-216ENST00000552909 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.81□□□□□ -0.68
LIMA1-216ENST00000552909 CCDC144AA2RUR9 1427 aa10.8□□□□□ -0.68
LIMA1-216ENST00000552909 FBXO41Q8TF61 875 aa10.8□□□□□ -0.68
LIMA1-216ENST00000552909 ADAMTS13Q76LX8 1427 aa10.79□□□□□ -0.68
LIMA1-216ENST00000552909 NEXMIFQ5QGS0 1516 aa10.79□□□□□ -0.68
LIMA1-216ENST00000552909 RBM33Q96EV2 1170 aaKnown RBP10.79□□□□□ -0.68
LIMA1-216ENST00000552909 ANKRD30BQ9BXX2 1392 aa10.78□□□□□ -0.68
LIMA1-216ENST00000552909 SPATA31E1Q6ZUB1 1445 aa10.78□□□□□ -0.68
LIMA1-216ENST00000552909 TBX22Q9Y458 520 aa10.77□□□□□ -0.68
LIMA1-216ENST00000552909 CPS1P31327 1500 aa10.77□□□□□ -0.69
LIMA1-216ENST00000552909 KCNA6P17658 529 aa10.76□□□□□ -0.69
LIMA1-216ENST00000552909 DHX57Q6P158 1386 aaKnown RBP10.76□□□□□ -0.69
LIMA1-216ENST00000552909 LRRC7Q96NW7 1537 aa10.76□□□□□ -0.69
LIMA1-216ENST00000552909 NRXN3Q9Y4C0 1643 aa10.76□□□□□ -0.69
LIMA1-216ENST00000552909 ADGRF5Q8IZF2 1346 aa10.75□□□□□ -0.69
LIMA1-216ENST00000552909 VGFO15240 615 aaPredicted RBP10.75□□□□□ -0.69
LIMA1-216ENST00000552909 RPGRIP1LQ68CZ1 1315 aa10.75□□□□□ -0.69
LIMA1-216ENST00000552909 CHD2O14647 1828 aaKnown RBP10.74□□□□□ -0.69
LIMA1-216ENST00000552909 PPLO60437 1756 aa10.74□□□□□ -0.69
LIMA1-216ENST00000552909 METP08581 1390 aa10.74□□□□□ -0.69
LIMA1-216ENST00000552909 UBAP1LF5GYI3 381 aa10.74□□□□□ -0.69
LIMA1-216ENST00000552909 PTPRUQ92729 1446 aa10.74□□□□□ -0.69
LIMA1-216ENST00000552909 SETBP1Q9Y6X0 1596 aa10.73□□□□□ -0.69
LIMA1-216ENST00000552909 PROSER2Q86WR7 435 aaPredicted RBP10.73□□□□□ -0.69
LIMA1-216ENST00000552909 IQSEC2Q5JU85 1478 aa10.73□□□□□ -0.69
LIMA1-216ENST00000552909 XIRP1Q702N8 1843 aaKnown RBP10.73□□□□□ -0.69
LIMA1-216ENST00000552909 AMOTL2Q9Y2J4 779 aa10.73□□□□□ -0.69
LIMA1-216ENST00000552909 TMEM94Q12767 1356 aa10.72□□□□□ -0.69
LIMA1-216ENST00000552909 NWD1Q149M9 1564 aa10.71□□□□□ -0.69
LIMA1-216ENST00000552909 IFT172Q9UG01 1749 aa10.71□□□□□ -0.7
LIMA1-216ENST00000552909 DIP2AQ14689 1571 aa10.71□□□□□ -0.7
LIMA1-216ENST00000552909 RBM19Q9Y4C8 960 aaKnown RBP10.7□□□□□ -0.7
LIMA1-216ENST00000552909 ALKQ9UM73 1620 aa10.7□□□□□ -0.7
LIMA1-216ENST00000552909 PIP4K2BP78356 416 aa10.7□□□□□ -0.7
LIMA1-216ENST00000552909 ERICH6Q7L0X2 663 aa10.7□□□□□ -0.7
LIMA1-216ENST00000552909 PIK3R4Q99570 1358 aa10.7□□□□□ -0.7
LIMA1-216ENST00000552909 KDM2AQ9Y2K7 1162 aa10.69□□□□□ -0.7
LIMA1-216ENST00000552909 SETD1AO15047 1707 aaKnown RBP10.69□□□□□ -0.7
LIMA1-216ENST00000552909 NKTRP30414 1462 aaKnown RBP10.69□□□□□ -0.7
LIMA1-216ENST00000552909 TOM1O60784 492 aa10.69□□□□□ -0.7
LIMA1-216ENST00000552909 TMEM132EQ6IEE7 984 aa10.69□□□□□ -0.7
LIMA1-216ENST00000552909 DCAF11Q8TEB1 546 aa10.69□□□□□ -0.7
LIMA1-216ENST00000552909 SIN3AQ96ST3 1273 aa10.69□□□□□ -0.7
LIMA1-216ENST00000552909 PIK3C2GO75747 1445 aa10.67□□□□□ -0.7
LIMA1-216ENST00000552909 CFAP70Q5T0N1 1121 aa10.67□□□□□ -0.7
LIMA1-216ENST00000552909 XRN1Q8IZH2 1706 aaKnown RBP10.66□□□□□ -0.7
LIMA1-216ENST00000552909 FKBP8Q14318 412 aa10.65□□□□□ -0.7
LIMA1-216ENST00000552909 C14orf37Q86TY3 774 aa10.65□□□□□ -0.7
LIMA1-216ENST00000552909 C14orf93Q9H972 538 aaKnown RBP10.65□□□□□ -0.7
LIMA1-216ENST00000552909 STK26Q9P289 416 aa10.65□□□□□ -0.7
LIMA1-216ENST00000552909 NRXN1Q9ULB1 1477 aa10.65□□□□□ -0.7
LIMA1-216ENST00000552909 ROBO2Q9HCK4 1378 aa10.65□□□□□ -0.7
LIMA1-216ENST00000552909 MYOM2P54296 1465 aa10.64□□□□□ -0.71
LIMA1-216ENST00000552909 ASXL1Q8IXJ9 1541 aa10.64□□□□□ -0.71
LIMA1-216ENST00000552909 MSH6P52701 1360 aa10.64□□□□□ -0.71
LIMA1-216ENST00000552909 C19orf44Q9H6X5 657 aa10.63□□□□□ -0.71
LIMA1-216ENST00000552909 HSPA1LP34931 641 aa10.63□□□□□ -0.71
LIMA1-216ENST00000552909 WAPLQ7Z5K2 1190 aa10.62□□□□□ -0.71
LIMA1-216ENST00000552909 L3MBTL2Q969R5 705 aa10.62□□□□□ -0.71
LIMA1-216ENST00000552909 SLAIN2Q9P270 581 aa10.62□□□□□ -0.71
LIMA1-216ENST00000552909 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.62□□□□□ -0.71
LIMA1-216ENST00000552909 NCOA3Q9Y6Q9 1424 aa10.62□□□□□ -0.71
LIMA1-216ENST00000552909 NEFLP07196 543 aa10.61□□□□□ -0.71
LIMA1-216ENST00000552909 PTCH1Q13635 1447 aa10.61□□□□□ -0.71
LIMA1-216ENST00000552909 YTHDC2Q9H6S0 1430 aaKnown RBP10.61□□□□□ -0.71
LIMA1-216ENST00000552909 MSH5O43196 834 aa10.6□□□□□ -0.71
LIMA1-216ENST00000552909 LRPPRCP42704 1394 aaKnown RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms