RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-222	ENST00000551425	RXRB	P28702	533 aa		19.01	■□□□□ 0.63
PTCH1-222	ENST00000551425	NOS1	P29475	1434 aa		19	■□□□□ 0.63
PTCH1-222	ENST00000551425	ADGRB3	O60242	1522 aa		19	■□□□□ 0.63
PTCH1-222	ENST00000551425	RRP7BP	Q9NSQ0	103 aa		19	■□□□□ 0.63
PTCH1-222	ENST00000551425	BCAN	Q96GW7	911 aa		18.99	■□□□□ 0.63
PTCH1-222	ENST00000551425	SLC52A1	Q9NWF4	448 aa		18.99	■□□□□ 0.63
PTCH1-222	ENST00000551425	AHDC1	Q5TGY3	1603 aa	Predicted RBP	18.98	■□□□□ 0.63
PTCH1-222	ENST00000551425	PLEKHG1	Q9ULL1	1385 aa		18.97	■□□□□ 0.63
PTCH1-222	ENST00000551425	SHPRH	Q149N8	1683 aa		18.97	■□□□□ 0.63
PTCH1-222	ENST00000551425	ABCC5	O15440	1437 aa		18.97	■□□□□ 0.63
PTCH1-222	ENST00000551425	ZFYVE9	O95405	1425 aa		18.96	■□□□□ 0.63
PTCH1-222	ENST00000551425	CHD2	O14647	1828 aa	Known RBP	18.95	■□□□□ 0.62
PTCH1-222	ENST00000551425	CADPS2	Q86UW7	1296 aa		18.95	■□□□□ 0.62
PTCH1-222	ENST00000551425	TBX22	Q9Y458	520 aa		18.94	■□□□□ 0.62
PTCH1-222	ENST00000551425	KANK4	Q5T7N3	995 aa	Predicted RBP	18.93	■□□□□ 0.62
PTCH1-222	ENST00000551425	C19orf44	Q9H6X5	657 aa		18.93	■□□□□ 0.62
PTCH1-222	ENST00000551425	SRCAP	Q6ZRS2	3230 aa		18.92	■□□□□ 0.62
PTCH1-222	ENST00000551425	HDGF	P51858	240 aa	Known RBP	18.92	■□□□□ 0.62
PTCH1-222	ENST00000551425	CROCC2	H7BZ55	1655 aa		18.92	■□□□□ 0.62
PTCH1-222	ENST00000551425	C14orf37	Q86TY3	774 aa		18.91	■□□□□ 0.62
PTCH1-222	ENST00000551425	DIP2A	Q14689	1571 aa		18.9	■□□□□ 0.62
PTCH1-222	ENST00000551425	ATF3	P18847	181 aa		18.9	■□□□□ 0.62
PTCH1-222	ENST00000551425	VPS8	Q8N3P4	1428 aa		18.9	■□□□□ 0.62
PTCH1-222	ENST00000551425	RIMS2	Q9UQ26	1411 aa		18.9	■□□□□ 0.62
PTCH1-222	ENST00000551425	PPP1R15A	O75807	674 aa	Predicted RBP	18.89	■□□□□ 0.61
PTCH1-222	ENST00000551425	AFF2	P51816	1311 aa		18.89	■□□□□ 0.61
PTCH1-222	ENST00000551425	DAPK1	P53355	1430 aa		18.89	■□□□□ 0.61
PTCH1-222	ENST00000551425	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	18.88	■□□□□ 0.61
PTCH1-222	ENST00000551425	NUTM2B	A6NNL0	878 aa	Predicted RBP	18.88	■□□□□ 0.61
PTCH1-222	ENST00000551425	NUTM2E	B1AL46	878 aa	Predicted RBP	18.88	■□□□□ 0.61
PTCH1-222	ENST00000551425	BRINP3	Q76B58	766 aa		18.88	■□□□□ 0.61
PTCH1-222	ENST00000551425	NUTM2A	Q8IVF1	878 aa	Predicted RBP	18.88	■□□□□ 0.61
PTCH1-222	ENST00000551425	RPRD2	Q5VT52	1461 aa	Known RBP	18.88	■□□□□ 0.61
PTCH1-222	ENST00000551425	PIK3R4	Q99570	1358 aa		18.87	■□□□□ 0.61
PTCH1-222	ENST00000551425	ANKRD30A	Q9BXX3	1397 aa		18.87	■□□□□ 0.61
PTCH1-222	ENST00000551425	RGS12	O14924	1447 aa		18.86	■□□□□ 0.61
PTCH1-222	ENST00000551425	ADAMTS13	Q76LX8	1427 aa		18.85	■□□□□ 0.61
PTCH1-222	ENST00000551425	SETD5	Q9C0A6	1442 aa		18.85	■□□□□ 0.61
PTCH1-222	ENST00000551425	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	18.85	■□□□□ 0.61
PTCH1-222	ENST00000551425	RBM6	P78332	1123 aa	Known RBP	18.84	■□□□□ 0.61
PTCH1-222	ENST00000551425	TMEM131L	A2VDJ0	1609 aa		18.83	■□□□□ 0.61
PTCH1-222	ENST00000551425	PTPN23	Q9H3S7	1636 aa		18.83	■□□□□ 0.61
PTCH1-222	ENST00000551425	DCC	P43146	1447 aa		18.83	■□□□□ 0.6
PTCH1-222	ENST00000551425	QTRT2	Q9H974	415 aa	Known RBP	18.82	■□□□□ 0.6
PTCH1-222	ENST00000551425	CHIC2	Q9UKJ5	165 aa		18.81	■□□□□ 0.6
PTCH1-222	ENST00000551425	ASXL1	Q8IXJ9	1541 aa		18.8	■□□□□ 0.6
PTCH1-222	ENST00000551425	GCC2	Q8IWJ2	1684 aa		18.8	■□□□□ 0.6
PTCH1-222	ENST00000551425	LRRC59	Q96AG4	307 aa	Known RBP	18.8	■□□□□ 0.6
PTCH1-222	ENST00000551425	MYO5B	Q9ULV0	1848 aa		18.79	■□□□□ 0.6
PTCH1-222	ENST00000551425	C8orf37	Q96NL8	207 aa		18.79	■□□□□ 0.6
PTCH1-222	ENST00000551425	NUTM2D	Q5VT03	806 aa	Predicted RBP	18.78	■□□□□ 0.6
PTCH1-222	ENST00000551425	AMOTL2	Q9Y2J4	779 aa		18.78	■□□□□ 0.6
PTCH1-222	ENST00000551425	ATAD2	Q6PL18	1390 aa		18.77	■□□□□ 0.6
PTCH1-222	ENST00000551425	PTPRU	Q92729	1446 aa		18.76	■□□□□ 0.59
PTCH1-222	ENST00000551425	TRPM2	O94759	1503 aa		18.76	■□□□□ 0.59
PTCH1-222	ENST00000551425	FOXD1	Q16676	465 aa		18.76	■□□□□ 0.59
PTCH1-222	ENST00000551425	NGLY1	Q96IV0	654 aa		18.76	■□□□□ 0.59
PTCH1-222	ENST00000551425	MST1R	Q04912	1400 aa		18.75	■□□□□ 0.59
PTCH1-222	ENST00000551425	NHSL1	Q5SYE7	1610 aa		18.75	■□□□□ 0.59
PTCH1-222	ENST00000551425	PNPLA6	Q8IY17	1366 aa		18.75	■□□□□ 0.59
PTCH1-222	ENST00000551425	ADGRL2	O95490	1459 aa		18.75	■□□□□ 0.59
PTCH1-222	ENST00000551425	ZRANB1	Q9UGI0	708 aa		18.74	■□□□□ 0.59
PTCH1-222	ENST00000551425	CHGA	P10645	457 aa	Known RBP	18.73	■□□□□ 0.59
PTCH1-222	ENST00000551425	ANKRD50	Q9ULJ7	1429 aa		18.72	■□□□□ 0.59
PTCH1-222	ENST00000551425	XRN1	Q8IZH2	1706 aa	Known RBP	18.69	■□□□□ 0.58
PTCH1-222	ENST00000551425	UNC13B	O14795	1591 aa		18.68	■□□□□ 0.58
PTCH1-222	ENST00000551425	DDX17	Q92841	729 aa	Known RBP	18.68	■□□□□ 0.58
PTCH1-222	ENST00000551425	ADAMTS2	O95450	1211 aa		18.67	■□□□□ 0.58
PTCH1-222	ENST00000551425	CCDC125	Q86Z20	511 aa		18.66	■□□□□ 0.58
PTCH1-222	ENST00000551425	USP21	Q9UK80	565 aa		18.66	■□□□□ 0.58
PTCH1-222	ENST00000551425	TRPC5	Q9UL62	973 aa	Predicted RBP	18.66	■□□□□ 0.58
PTCH1-222	ENST00000551425	SETBP1	Q9Y6X0	1596 aa		18.66	■□□□□ 0.58
PTCH1-222	ENST00000551425	ADGRL3	Q9HAR2	1447 aa		18.65	■□□□□ 0.58
PTCH1-222	ENST00000551425	FNBP4	Q8N3X1	1017 aa	Predicted RBP	18.64	■□□□□ 0.57
PTCH1-222	ENST00000551425	ATRN	O75882	1429 aa		18.63	■□□□□ 0.57
PTCH1-222	ENST00000551425	NRXN3	Q9Y4C0	1643 aa		18.63	■□□□□ 0.57
PTCH1-222	ENST00000551425	PTCH1	Q13635	1447 aa		18.62	■□□□□ 0.57
PTCH1-222	ENST00000551425		E9PCH4	1651 aa		18.62	■□□□□ 0.57
PTCH1-222	ENST00000551425	LAMC1	P11047	1609 aa		18.61	■□□□□ 0.57
PTCH1-222	ENST00000551425	MET	P08581	1390 aa		18.61	■□□□□ 0.57
PTCH1-222	ENST00000551425	SOS2	Q07890	1332 aa	Predicted RBP	18.61	■□□□□ 0.57
PTCH1-222	ENST00000551425	APLP2	Q06481	763 aa		18.61	■□□□□ 0.57
PTCH1-222	ENST00000551425	EP400	Q96L91	3159 aa		18.61	■□□□□ 0.57
PTCH1-222	ENST00000551425	C1orf167	Q5SNV9	1468 aa		18.6	■□□□□ 0.57
PTCH1-222	ENST00000551425	LOC105371045	A0A1W2PR82	267 aa		18.56	■□□□□ 0.56
PTCH1-222	ENST00000551425	NALCN	Q8IZF0	1738 aa		18.56	■□□□□ 0.56
PTCH1-222	ENST00000551425	IQGAP3	Q86VI3	1631 aa		18.55	■□□□□ 0.56
PTCH1-222	ENST00000551425	FAM50A	Q14320	339 aa	Known RBP	18.54	■□□□□ 0.56
PTCH1-222	ENST00000551425	BCL9L	Q86UU0	1499 aa		18.53	■□□□□ 0.56
PTCH1-222	ENST00000551425	ORAI2	Q96SN7	254 aa		18.53	■□□□□ 0.56
PTCH1-222	ENST00000551425	COL22A1	Q8NFW1	1626 aa	Predicted RBP	18.52	■□□□□ 0.56
PTCH1-222	ENST00000551425	MYOM2	P54296	1465 aa		18.52	■□□□□ 0.55
PTCH1-222	ENST00000551425	GJD4	Q96KN9	370 aa	Predicted RBP	18.51	■□□□□ 0.55
PTCH1-222	ENST00000551425	BLM	P54132	1417 aa	Predicted RBP	18.5	■□□□□ 0.55
PTCH1-222	ENST00000551425	ZNF326	Q5BKZ1	582 aa	Known RBP	18.5	■□□□□ 0.55
PTCH1-222	ENST00000551425	NUP155	O75694	1391 aa		18.5	■□□□□ 0.55
PTCH1-222	ENST00000551425	ROCK1	Q13464	1354 aa		18.48	■□□□□ 0.55
PTCH1-222	ENST00000551425	LRP5	O75197	1615 aa		18.45	■□□□□ 0.54
PTCH1-222	ENST00000551425	ROBO2	Q9HCK4	1378 aa		18.45	■□□□□ 0.54
PTCH1-222	ENST00000551425	PRAG1	Q86YV5	1406 aa		18.45	■□□□□ 0.54

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