RNA–Protein interactions for RNA: ENST00000551269.1

PRPF40B-213, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 923 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-213ENST00000551269 RIMS2Q9UQ26 1411 aa16.97■□□□□ 0.31
PRPF40B-213ENST00000551269 THEMISQ8N1K5 641 aaPredicted RBP16.97■□□□□ 0.31
PRPF40B-213ENST00000551269 SIN3AQ96ST3 1273 aa16.96■□□□□ 0.31
PRPF40B-213ENST00000551269 TMEM2Q9UHN6 1383 aa16.96■□□□□ 0.31
PRPF40B-213ENST00000551269 MYOM2P54296 1465 aa16.96■□□□□ 0.31
PRPF40B-213ENST00000551269 SCAF11Q99590 1463 aaKnown RBP16.96■□□□□ 0.31
PRPF40B-213ENST00000551269 ZFYVE9O95405 1425 aa16.96■□□□□ 0.3
PRPF40B-213ENST00000551269 RGL3Q3MIN7 710 aa16.94■□□□□ 0.3
PRPF40B-213ENST00000551269 PPP1R15AO75807 674 aaPredicted RBP16.93■□□□□ 0.3
PRPF40B-213ENST00000551269 KIAA1210Q9ULL0 1709 aa16.93■□□□□ 0.3
PRPF40B-213ENST00000551269 EID1Q9Y6B2 187 aa16.92■□□□□ 0.3
PRPF40B-213ENST00000551269 DIP2AQ14689 1571 aa16.92■□□□□ 0.3
PRPF40B-213ENST00000551269 RPGRIP1LQ68CZ1 1315 aa16.92■□□□□ 0.3
PRPF40B-213ENST00000551269 NRXN3Q9Y4C0 1643 aa16.92■□□□□ 0.3
PRPF40B-213ENST00000551269 SETD1AO15047 1707 aaKnown RBP16.91■□□□□ 0.3
PRPF40B-213ENST00000551269 HDGFP51858 240 aaKnown RBP16.91■□□□□ 0.3
PRPF40B-213ENST00000551269 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.91■□□□□ 0.3
PRPF40B-213ENST00000551269 SETBP1Q9Y6X0 1596 aa16.9■□□□□ 0.3
PRPF40B-213ENST00000551269 HSPA2P54652 639 aa16.9■□□□□ 0.3
PRPF40B-213ENST00000551269 TRPM1Q7Z4N2 1603 aa16.89■□□□□ 0.29
PRPF40B-213ENST00000551269 ANKLE2Q86XL3 938 aa16.88■□□□□ 0.29
PRPF40B-213ENST00000551269 MED14O60244 1454 aa16.87■□□□□ 0.29
PRPF40B-213ENST00000551269 PLEKHG1Q9ULL1 1385 aa16.87■□□□□ 0.29
PRPF40B-213ENST00000551269 NPHP4O75161 1426 aaPredicted RBP16.87■□□□□ 0.29
PRPF40B-213ENST00000551269 NRXN1Q9ULB1 1477 aa16.86■□□□□ 0.29
PRPF40B-213ENST00000551269 NUTM2DQ5VT03 806 aaPredicted RBP16.86■□□□□ 0.29
PRPF40B-213ENST00000551269 TXNDC2Q86VQ3 553 aa16.86■□□□□ 0.29
PRPF40B-213ENST00000551269 DCAF11Q8TEB1 546 aa16.86■□□□□ 0.29
PRPF40B-213ENST00000551269 PIK3C2GO75747 1445 aa16.86■□□□□ 0.29
PRPF40B-213ENST00000551269 VGFO15240 615 aaPredicted RBP16.85■□□□□ 0.29
PRPF40B-213ENST00000551269 BCANQ96GW7 911 aa16.84■□□□□ 0.29
PRPF40B-213ENST00000551269 KDM2AQ9Y2K7 1162 aa16.84■□□□□ 0.29
PRPF40B-213ENST00000551269 ALKQ9UM73 1620 aa16.84■□□□□ 0.29
PRPF40B-213ENST00000551269 KNDC1Q76NI1 1749 aa16.84■□□□□ 0.29
PRPF40B-213ENST00000551269 PRAG1Q86YV5 1406 aa16.83■□□□□ 0.28
PRPF40B-213ENST00000551269 L3MBTL2Q969R5 705 aa16.83■□□□□ 0.28
PRPF40B-213ENST00000551269 STAC3Q96MF2 364 aa16.83■□□□□ 0.28
PRPF40B-213ENST00000551269 TIMELESSQ9UNS1 1208 aa16.83■□□□□ 0.28
PRPF40B-213ENST00000551269 CHD2O14647 1828 aaKnown RBP16.82■□□□□ 0.28
PRPF40B-213ENST00000551269 NCKAP5LQ9HCH0 1330 aa16.82■□□□□ 0.28
PRPF40B-213ENST00000551269 LTKP29376 864 aa16.82■□□□□ 0.28
PRPF40B-213ENST00000551269 ADGRF5Q8IZF2 1346 aa16.8■□□□□ 0.28
PRPF40B-213ENST00000551269 SENP3Q9H4L4 574 aaPredicted RBP16.79■□□□□ 0.28
PRPF40B-213ENST00000551269 XRN1Q8IZH2 1706 aaKnown RBP16.78■□□□□ 0.28
PRPF40B-213ENST00000551269 RALGAPBQ86X10 1494 aa16.78■□□□□ 0.28
PRPF40B-213ENST00000551269 ADAMTS13Q76LX8 1427 aa16.78■□□□□ 0.28
PRPF40B-213ENST00000551269 NWD1Q149M9 1564 aa16.77■□□□□ 0.28
PRPF40B-213ENST00000551269 ASXL1Q8IXJ9 1541 aa16.77■□□□□ 0.28
PRPF40B-213ENST00000551269 ARHGEF28Q8N1W1 1705 aaKnown RBP16.77■□□□□ 0.28
PRPF40B-213ENST00000551269 STRCP1A6NGW2 1772 aa16.75■□□□□ 0.27
PRPF40B-213ENST00000551269 DMRT2Q9Y5R5 561 aa16.75■□□□□ 0.27
PRPF40B-213ENST00000551269 ADGRB1O14514 1584 aa16.74■□□□□ 0.27
PRPF40B-213ENST00000551269 CPS1P31327 1500 aa16.72■□□□□ 0.27
PRPF40B-213ENST00000551269 ZEB1P37275 1124 aaPredicted RBP16.72■□□□□ 0.27
PRPF40B-213ENST00000551269 SLC26A8Q96RN1 970 aa16.72■□□□□ 0.27
PRPF40B-213ENST00000551269 ROCK2O75116 1388 aaKnown RBP16.72■□□□□ 0.27
PRPF40B-213ENST00000551269 PIK3R4Q99570 1358 aa16.72■□□□□ 0.27
PRPF40B-213ENST00000551269 QRICH2Q9H0J4 1663 aa16.71■□□□□ 0.27
PRPF40B-213ENST00000551269 NKTRP30414 1462 aaKnown RBP16.7■□□□□ 0.26
PRPF40B-213ENST00000551269 CFAP70Q5T0N1 1121 aa16.69■□□□□ 0.26
PRPF40B-213ENST00000551269 TBX22Q9Y458 520 aa16.69■□□□□ 0.26
PRPF40B-213ENST00000551269 C14orf93Q9H972 538 aaKnown RBP16.68■□□□□ 0.26
PRPF40B-213ENST00000551269 YTHDC2Q9H6S0 1430 aaKnown RBP16.68■□□□□ 0.26
PRPF40B-213ENST00000551269 XIRP1Q702N8 1843 aaKnown RBP16.68■□□□□ 0.26
PRPF40B-213ENST00000551269 METP08581 1390 aa16.67■□□□□ 0.26
PRPF40B-213ENST00000551269 DLC1Q96QB1 1528 aa16.67■□□□□ 0.26
PRPF40B-213ENST00000551269 NBPF8Q3BBV2 869 aa16.67■□□□□ 0.26
PRPF40B-213ENST00000551269 PTCH1Q13635 1447 aa16.66■□□□□ 0.26
PRPF40B-213ENST00000551269 NALCNQ8IZF0 1738 aa16.66■□□□□ 0.26
PRPF40B-213ENST00000551269 LRPPRCP42704 1394 aaKnown RBP16.64■□□□□ 0.26
PRPF40B-213ENST00000551269 EIF3AQ14152 1382 aaKnown RBP16.64■□□□□ 0.26
PRPF40B-213ENST00000551269 GPRASP1Q5JY77 1395 aa16.64■□□□□ 0.26
PRPF40B-213ENST00000551269 TECPR2O15040 1411 aa16.64■□□□□ 0.25
PRPF40B-213ENST00000551269 PTPRUQ92729 1446 aa16.64■□□□□ 0.25
PRPF40B-213ENST00000551269 TMEM132EQ6IEE7 984 aa16.63■□□□□ 0.25
PRPF40B-213ENST00000551269 CARD11Q9BXL7 1154 aa16.62■□□□□ 0.25
PRPF40B-213ENST00000551269 NBPF1Q3BBV0 1214 aa16.61■□□□□ 0.25
PRPF40B-213ENST00000551269 STK26Q9P289 416 aa16.61■□□□□ 0.25
PRPF40B-213ENST00000551269 ZNF335Q9H4Z2 1342 aaPredicted RBP16.61■□□□□ 0.25
PRPF40B-213ENST00000551269 KCNA6P17658 529 aa16.6■□□□□ 0.25
PRPF40B-213ENST00000551269 LTBP4Q8N2S1 1624 aa16.59■□□□□ 0.25
PRPF40B-213ENST00000551269 AMOTL2Q9Y2J4 779 aa16.59■□□□□ 0.25
PRPF40B-213ENST00000551269 ABCC11Q96J66 1382 aa16.59■□□□□ 0.25
PRPF40B-213ENST00000551269 ADGRB2O60241 1585 aa16.59■□□□□ 0.25
PRPF40B-213ENST00000551269 TRAK1Q9UPV9 953 aa16.58■□□□□ 0.24
PRPF40B-213ENST00000551269 USP47Q96K76 1375 aa16.58■□□□□ 0.24
PRPF40B-213ENST00000551269 FAM135BQ49AJ0 1406 aa16.58■□□□□ 0.24
PRPF40B-213ENST00000551269 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.58■□□□□ 0.24
PRPF40B-213ENST00000551269 ITSN1Q15811 1721 aa16.56■□□□□ 0.24
PRPF40B-213ENST00000551269 LRRC7Q96NW7 1537 aa16.56■□□□□ 0.24
PRPF40B-213ENST00000551269 ROBO2Q9HCK4 1378 aa16.56■□□□□ 0.24
PRPF40B-213ENST00000551269 CDC42BPGQ6DT37 1551 aa16.55■□□□□ 0.24
PRPF40B-213ENST00000551269 FMN2Q9NZ56 1722 aa16.55■□□□□ 0.24
PRPF40B-213ENST00000551269 POGKQ9P215 609 aa16.54■□□□□ 0.24
PRPF40B-213ENST00000551269 CENPJQ9HC77 1338 aaPredicted RBP16.53■□□□□ 0.24
PRPF40B-213ENST00000551269 ADGRL3Q9HAR2 1447 aa16.53■□□□□ 0.24
PRPF40B-213ENST00000551269 RGPD8O14715 1765 aaPredicted RBP16.52■□□□□ 0.24
PRPF40B-213ENST00000551269 C14orf37Q86TY3 774 aa16.52■□□□□ 0.24
PRPF40B-213ENST00000551269 PROSER2Q86WR7 435 aaPredicted RBP16.52■□□□□ 0.24
PRPF40B-213ENST00000551269 PRAM1Q96QH2 718 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms