RNA–Protein interactions for RNA: ENST00000550893.2

SCAF11-214, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 507 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-214ENST00000550893 PPP4CP60510 307 aa10.29□□□□□ -0.76
SCAF11-214ENST00000550893 BICRAQ9NZM4 1560 aa10.28□□□□□ -0.76
SCAF11-214ENST00000550893 RNF40O75150 1001 aa10.28□□□□□ -0.76
SCAF11-214ENST00000550893 METTL3Q86U44 580 aaKnown RBP10.28□□□□□ -0.76
SCAF11-214ENST00000550893 TMEM134Q9H6X4 195 aa10.27□□□□□ -0.77
SCAF11-214ENST00000550893 DCAF1Q9Y4B6 1507 aa10.27□□□□□ -0.77
SCAF11-214ENST00000550893 NYAP1Q6ZVC0 841 aa10.26□□□□□ -0.77
SCAF11-214ENST00000550893 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.25□□□□□ -0.77
SCAF11-214ENST00000550893 SLF2Q8IX21 1173 aa10.25□□□□□ -0.77
SCAF11-214ENST00000550893 MAP2K5Q13163 448 aa10.23□□□□□ -0.77
SCAF11-214ENST00000550893 PHOX2BQ99453 314 aa10.22□□□□□ -0.77
SCAF11-214ENST00000550893 IRF6O14896 467 aa10.21□□□□□ -0.77
SCAF11-214ENST00000550893 SLC4A3P48751 1232 aa10.21□□□□□ -0.77
SCAF11-214ENST00000550893 NLRP7Q8WX94 980 aa10.21□□□□□ -0.77
SCAF11-214ENST00000550893 APLP1P51693 650 aa10.2□□□□□ -0.78
SCAF11-214ENST00000550893 ZC3H15Q8WU90 426 aaKnown RBP10.2□□□□□ -0.78
SCAF11-214ENST00000550893 MINK1Q8N4C8 1332 aaPredicted RBP10.19□□□□□ -0.78
SCAF11-214ENST00000550893 NECTIN2Q92692 538 aa10.19□□□□□ -0.78
SCAF11-214ENST00000550893 ZMYND10O75800 440 aa10.17□□□□□ -0.78
SCAF11-214ENST00000550893 ITGBL1O95965 494 aaPredicted RBP10.17□□□□□ -0.78
SCAF11-214ENST00000550893 BCANQ96GW7 911 aa10.17□□□□□ -0.78
SCAF11-214ENST00000550893 SLC10A3P09131 477 aa10.16□□□□□ -0.78
SCAF11-214ENST00000550893 BARGINQ6ZT62 677 aa10.16□□□□□ -0.78
SCAF11-214ENST00000550893 CCDC102AQ96A19 550 aa10.16□□□□□ -0.78
SCAF11-214ENST00000550893 DAXXQ9UER7 740 aaPredicted RBP10.16□□□□□ -0.78
SCAF11-214ENST00000550893 RGS20O76081 388 aa10.15□□□□□ -0.78
SCAF11-214ENST00000550893 IFFO2Q5TF58 517 aa10.15□□□□□ -0.78
SCAF11-214ENST00000550893 KRI1Q8N9T8 703 aaKnown RBP10.14□□□□□ -0.79
SCAF11-214ENST00000550893 KCNC4Q03721 635 aa10.13□□□□□ -0.79
SCAF11-214ENST00000550893 TJAP1Q5JTD0 557 aa10.13□□□□□ -0.79
SCAF11-214ENST00000550893 CFHP08603 1231 aa10.12□□□□□ -0.79
SCAF11-214ENST00000550893 MTRQ99707 1265 aa10.12□□□□□ -0.79
SCAF11-214ENST00000550893 DDX11L8A8MPP1 907 aa10.11□□□□□ -0.79
SCAF11-214ENST00000550893 PRR14Q9BWN1 585 aa10.11□□□□□ -0.79
SCAF11-214ENST00000550893 RSPH4AQ5TD94 716 aa10.1□□□□□ -0.79
SCAF11-214ENST00000550893 SCRIBQ14160 1630 aa10.09□□□□□ -0.79
SCAF11-214ENST00000550893 COPS2P61201 443 aa10.09□□□□□ -0.79
SCAF11-214ENST00000550893 MDM2Q00987 491 aaPredicted RBP10.09□□□□□ -0.79
SCAF11-214ENST00000550893 KMT5BQ4FZB7 885 aa10.09□□□□□ -0.79
SCAF11-214ENST00000550893 RDH13Q8NBN7 331 aa10.09□□□□□ -0.79
SCAF11-214ENST00000550893 IL21Q9HBE4 155 aa10.09□□□□□ -0.79
SCAF11-214ENST00000550893 PCDHB3Q9Y5E6 796 aa10.09□□□□□ -0.79
SCAF11-214ENST00000550893 ACTN4O43707 911 aaKnown RBP10.08□□□□□ -0.8
SCAF11-214ENST00000550893 ZNF516Q92618 1163 aa10.08□□□□□ -0.8
SCAF11-214ENST00000550893 SULF1Q8IWU6 871 aa10.07□□□□□ -0.8
SCAF11-214ENST00000550893 IRX2Q9BZI1 471 aaPredicted RBP10.07□□□□□ -0.8
SCAF11-214ENST00000550893 A0A0G2JS52 829 aa10.06□□□□□ -0.8
SCAF11-214ENST00000550893 BLOC1S3Q6QNY0 202 aa10.06□□□□□ -0.8
SCAF11-214ENST00000550893 ZPR1O75312 459 aa10.03□□□□□ -0.8
SCAF11-214ENST00000550893 CLCN1P35523 988 aa10.03□□□□□ -0.8
SCAF11-214ENST00000550893 GCGRP47871 477 aa10.03□□□□□ -0.8
SCAF11-214ENST00000550893 TMUB1Q9BVT8 246 aa10.03□□□□□ -0.8
SCAF11-214ENST00000550893 REPIN1Q9BWE0 567 aaKnown RBP10.03□□□□□ -0.8
SCAF11-214ENST00000550893 GPCPD1Q9NPB8 672 aa10.03□□□□□ -0.8
SCAF11-214ENST00000550893 CD46P15529 392 aa10.02□□□□□ -0.81
SCAF11-214ENST00000550893 NKX2-3Q8TAU0 364 aa10.02□□□□□ -0.81
SCAF11-214ENST00000550893 PUS10Q3MIT2 529 aaKnown RBP10.01□□□□□ -0.81
SCAF11-214ENST00000550893 FUT2Q10981 343 aa10□□□□□ -0.81
SCAF11-214ENST00000550893 AMHR2Q16671 573 aa10□□□□□ -0.81
SCAF11-214ENST00000550893 AK7Q96M32 723 aa10□□□□□ -0.81
SCAF11-214ENST00000550893 FAM217BQ9NTX9 383 aaPredicted RBP10□□□□□ -0.81
SCAF11-214ENST00000550893 SHROOM4Q9ULL8 1493 aa9.99□□□□□ -0.81
SCAF11-214ENST00000550893 TRIM66O15016 1216 aa9.99□□□□□ -0.81
SCAF11-214ENST00000550893 SLC24A3Q9HC58 644 aa9.99□□□□□ -0.81
SCAF11-214ENST00000550893 TLL1O43897 1013 aa9.97□□□□□ -0.81
SCAF11-214ENST00000550893 NR1I2O75469 434 aa9.97□□□□□ -0.81
SCAF11-214ENST00000550893 ATP6V1AP38606 617 aa9.97□□□□□ -0.81
SCAF11-214ENST00000550893 TTLL12Q14166 644 aaPredicted RBP9.97□□□□□ -0.81
SCAF11-214ENST00000550893 SCUBE3Q8IX30 993 aa9.97□□□□□ -0.81
SCAF11-214ENST00000550893 MORN1Q5T089 497 aa9.96□□□□□ -0.82
SCAF11-214ENST00000550893 SSTR3P32745 418 aaPredicted RBP9.95□□□□□ -0.82
SCAF11-214ENST00000550893 PPP1R18Q6NYC8 613 aa9.95□□□□□ -0.82
SCAF11-214ENST00000550893 KDM4AO75164 1064 aa9.94□□□□□ -0.82
SCAF11-214ENST00000550893 GIGYF2Q6Y7W6 1299 aaKnown RBP9.94□□□□□ -0.82
SCAF11-214ENST00000550893 PARP9Q8IXQ6 854 aa9.94□□□□□ -0.82
SCAF11-214ENST00000550893 SLC27A5Q9Y2P5 690 aa9.93□□□□□ -0.82
SCAF11-214ENST00000550893 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.92□□□□□ -0.82
SCAF11-214ENST00000550893 ADH1BP00325 375 aa9.91□□□□□ -0.82
SCAF11-214ENST00000550893 GRIPAP1Q4V328 841 aa9.91□□□□□ -0.82
SCAF11-214ENST00000550893 EIF4G1Q04637 1599 aaKnown RBP9.9□□□□□ -0.82
SCAF11-214ENST00000550893 PDE4DQ08499 809 aa9.9□□□□□ -0.82
SCAF11-214ENST00000550893 USP46P62068 366 aa9.89□□□□□ -0.83
SCAF11-214ENST00000550893 HLA-CQ95604 372 aa9.89□□□□□ -0.83
SCAF11-214ENST00000550893 THAP11Q96EK4 314 aa9.89□□□□□ -0.83
SCAF11-214ENST00000550893 SPSB2Q99619 263 aa9.89□□□□□ -0.83
SCAF11-214ENST00000550893 CC2D2AQ9P2K1 1620 aa9.89□□□□□ -0.83
SCAF11-214ENST00000550893 HOXA2O43364 376 aa9.88□□□□□ -0.83
SCAF11-214ENST00000550893 MS4A1P11836 297 aa9.88□□□□□ -0.83
SCAF11-214ENST00000550893 GGCXP38435 758 aa9.88□□□□□ -0.83
SCAF11-214ENST00000550893 NUTM1Q86Y26 1132 aa9.88□□□□□ -0.83
SCAF11-214ENST00000550893 FMNL1O95466 1100 aaPredicted RBP9.87□□□□□ -0.83
SCAF11-214ENST00000550893 S1PR4O95977 384 aa9.87□□□□□ -0.83
SCAF11-214ENST00000550893 RNF223E7ERA6 249 aa9.86□□□□□ -0.83
SCAF11-214ENST00000550893 GUCA2AQ02747 115 aa9.86□□□□□ -0.83
SCAF11-214ENST00000550893 BRICD5Q6PL45 260 aa9.86□□□□□ -0.83
SCAF11-214ENST00000550893 RNF19BQ6ZMZ0 732 aa9.86□□□□□ -0.83
SCAF11-214ENST00000550893 BEGAINQ9BUH8 593 aa9.86□□□□□ -0.83
SCAF11-214ENST00000550893 SLC6A16Q9GZN6 736 aa9.86□□□□□ -0.83
SCAF11-214ENST00000550893 SALL2Q9Y467 1007 aaPredicted RBP9.86□□□□□ -0.83
SCAF11-214ENST00000550893 PPEF1O14829 653 aaPredicted RBP9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms