RNA–Protein interactions for RNA: ENST00000549347.1

RAPGEF3-220, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 4

Gene RAPGEF3, Length 573 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-220ENST00000549347 NEXMIFQ5QGS0 1516 aa26.08■■□□□ 1.77
RAPGEF3-220ENST00000549347 TXNDC2Q86VQ3 553 aa26.07■■□□□ 1.76
RAPGEF3-220ENST00000549347 ANKRD30BQ9BXX2 1392 aa26.07■■□□□ 1.76
RAPGEF3-220ENST00000549347 PPLO60437 1756 aa26.04■■□□□ 1.76
RAPGEF3-220ENST00000549347 SPATA31E1Q6ZUB1 1445 aa26.04■■□□□ 1.76
RAPGEF3-220ENST00000549347 IFT172Q9UG01 1749 aa26.03■■□□□ 1.76
RAPGEF3-220ENST00000549347 PLEKHG1Q9ULL1 1385 aa26.01■■□□□ 1.75
RAPGEF3-220ENST00000549347 HDGFP51858 240 aaKnown RBP26■■□□□ 1.75
RAPGEF3-220ENST00000549347 ABCF1Q8NE71 845 aaKnown RBP eCLIP26■■□□□ 1.75
RAPGEF3-220ENST00000549347 LTBP4Q8N2S1 1624 aa25.97■■□□□ 1.75
RAPGEF3-220ENST00000549347 NRXN3Q9Y4C0 1643 aa25.97■■□□□ 1.75
RAPGEF3-220ENST00000549347 ZNF326Q5BKZ1 582 aaKnown RBP25.97■■□□□ 1.75
RAPGEF3-220ENST00000549347 DIP2AQ14689 1571 aa25.97■■□□□ 1.75
RAPGEF3-220ENST00000549347 SETBP1Q9Y6X0 1596 aa25.97■■□□□ 1.75
RAPGEF3-220ENST00000549347 DHX57Q6P158 1386 aaKnown RBP25.96■■□□□ 1.75
RAPGEF3-220ENST00000549347 PPP1R15AO75807 674 aaPredicted RBP25.95■■□□□ 1.74
RAPGEF3-220ENST00000549347 RPGRIP1LQ68CZ1 1315 aa25.94■■□□□ 1.74
RAPGEF3-220ENST00000549347 STRCP1A6NGW2 1772 aa25.92■■□□□ 1.74
RAPGEF3-220ENST00000549347 ADAMTS13Q76LX8 1427 aa25.91■■□□□ 1.74
RAPGEF3-220ENST00000549347 PCGF6Q9BYE7 350 aa25.91■■□□□ 1.74
RAPGEF3-220ENST00000549347 ZNF335Q9H4Z2 1342 aaPredicted RBP25.9■■□□□ 1.74
RAPGEF3-220ENST00000549347 NUTM2DQ5VT03 806 aaPredicted RBP25.9■■□□□ 1.74
RAPGEF3-220ENST00000549347 NWD1Q149M9 1564 aa25.89■■□□□ 1.73
RAPGEF3-220ENST00000549347 CPS1P31327 1500 aa25.88■■□□□ 1.73
RAPGEF3-220ENST00000549347 SETD1AO15047 1707 aaKnown RBP25.88■■□□□ 1.73
RAPGEF3-220ENST00000549347 MYOM2P54296 1465 aa25.86■■□□□ 1.73
RAPGEF3-220ENST00000549347 CHD2O14647 1828 aaKnown RBP25.85■■□□□ 1.73
RAPGEF3-220ENST00000549347 VGFO15240 615 aaPredicted RBP25.84■■□□□ 1.73
RAPGEF3-220ENST00000549347 RGL3Q3MIN7 710 aa25.84■■□□□ 1.73
RAPGEF3-220ENST00000549347 SLC26A8Q96RN1 970 aa25.84■■□□□ 1.73
RAPGEF3-220ENST00000549347 BCANQ96GW7 911 aa25.82■■□□□ 1.72
RAPGEF3-220ENST00000549347 TBX22Q9Y458 520 aa25.82■■□□□ 1.72
RAPGEF3-220ENST00000549347 IQSEC2Q5JU85 1478 aa25.81■■□□□ 1.72
RAPGEF3-220ENST00000549347 NRXN1Q9ULB1 1477 aa25.81■■□□□ 1.72
RAPGEF3-220ENST00000549347 PIK3R4Q99570 1358 aa25.81■■□□□ 1.72
RAPGEF3-220ENST00000549347 ALKQ9UM73 1620 aa25.8■■□□□ 1.72
RAPGEF3-220ENST00000549347 NKTRP30414 1462 aaKnown RBP25.79■■□□□ 1.72
RAPGEF3-220ENST00000549347 PIK3C2GO75747 1445 aa25.79■■□□□ 1.72
RAPGEF3-220ENST00000549347 SENP3Q9H4L4 574 aaPredicted RBP25.78■■□□□ 1.72
RAPGEF3-220ENST00000549347 LAMC1P11047 1609 aa25.77■■□□□ 1.72
RAPGEF3-220ENST00000549347 XRN1Q8IZH2 1706 aaKnown RBP25.77■■□□□ 1.72
RAPGEF3-220ENST00000549347 ADGRF5Q8IZF2 1346 aa25.77■■□□□ 1.72
RAPGEF3-220ENST00000549347 CERKQ8TCT0 537 aa25.76■■□□□ 1.71
RAPGEF3-220ENST00000549347 LRRC7Q96NW7 1537 aa25.75■■□□□ 1.71
RAPGEF3-220ENST00000549347 KCNA6P17658 529 aa25.74■■□□□ 1.71
RAPGEF3-220ENST00000549347 XIRP1Q702N8 1843 aaKnown RBP25.74■■□□□ 1.71
RAPGEF3-220ENST00000549347 PTPRUQ92729 1446 aa25.72■■□□□ 1.71
RAPGEF3-220ENST00000549347 METP08581 1390 aa25.71■■□□□ 1.71
RAPGEF3-220ENST00000549347 ASXL1Q8IXJ9 1541 aa25.7■■□□□ 1.7
RAPGEF3-220ENST00000549347 STAC3Q96MF2 364 aa25.7■■□□□ 1.7
RAPGEF3-220ENST00000549347 SIN3AQ96ST3 1273 aa25.69■■□□□ 1.7
RAPGEF3-220ENST00000549347 PRAG1Q86YV5 1406 aa25.69■■□□□ 1.7
RAPGEF3-220ENST00000549347 DCAF11Q8TEB1 546 aa25.66■■□□□ 1.7
RAPGEF3-220ENST00000549347 KNDC1Q76NI1 1749 aa25.66■■□□□ 1.7
RAPGEF3-220ENST00000549347 KIAA1210Q9ULL0 1709 aa25.63■■□□□ 1.69
RAPGEF3-220ENST00000549347 PTCH1Q13635 1447 aa25.62■■□□□ 1.69
RAPGEF3-220ENST00000549347 TMEM94Q12767 1356 aa25.61■■□□□ 1.69
RAPGEF3-220ENST00000549347 C14orf93Q9H972 538 aaKnown RBP25.61■■□□□ 1.69
RAPGEF3-220ENST00000549347 AMOTL2Q9Y2J4 779 aa25.61■■□□□ 1.69
RAPGEF3-220ENST00000549347 ADGRB1O14514 1584 aa25.61■■□□□ 1.69
RAPGEF3-220ENST00000549347 NEUROD1Q13562 356 aa25.6■■□□□ 1.69
RAPGEF3-220ENST00000549347 KDM2AQ9Y2K7 1162 aa25.6■■□□□ 1.69
RAPGEF3-220ENST00000549347 CLSPNQ9HAW4 1339 aa25.6■■□□□ 1.69
RAPGEF3-220ENST00000549347 TECPR2O15040 1411 aa25.59■■□□□ 1.69
RAPGEF3-220ENST00000549347 NCOA3Q9Y6Q9 1424 aa25.59■■□□□ 1.69
RAPGEF3-220ENST00000549347 L3MBTL2Q969R5 705 aa25.58■■□□□ 1.69
RAPGEF3-220ENST00000549347 PROSER2Q86WR7 435 aaPredicted RBP25.57■■□□□ 1.68
RAPGEF3-220ENST00000549347 LRPPRCP42704 1394 aaKnown RBP25.56■■□□□ 1.68
RAPGEF3-220ENST00000549347 CFAP70Q5T0N1 1121 aa25.56■■□□□ 1.68
RAPGEF3-220ENST00000549347 YTHDC2Q9H6S0 1430 aaKnown RBP25.54■■□□□ 1.68
RAPGEF3-220ENST00000549347 NALCNQ8IZF0 1738 aa25.54■■□□□ 1.68
RAPGEF3-220ENST00000549347 FBXO41Q8TF61 875 aa25.53■■□□□ 1.68
RAPGEF3-220ENST00000549347 TONSLQ96HA7 1378 aa25.53■■□□□ 1.68
RAPGEF3-220ENST00000549347 TRPM1Q7Z4N2 1603 aa25.52■■□□□ 1.68
RAPGEF3-220ENST00000549347 ABCC11Q96J66 1382 aa25.52■■□□□ 1.68
RAPGEF3-220ENST00000549347 ROBO2Q9HCK4 1378 aa25.52■■□□□ 1.68
RAPGEF3-220ENST00000549347 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.51■■□□□ 1.67
RAPGEF3-220ENST00000549347 TMEM132EQ6IEE7 984 aa25.5■■□□□ 1.67
RAPGEF3-220ENST00000549347 DLC1Q96QB1 1528 aa25.5■■□□□ 1.67
RAPGEF3-220ENST00000549347 MSH6P52701 1360 aa25.49■■□□□ 1.67
RAPGEF3-220ENST00000549347 RBM33Q96EV2 1170 aaKnown RBP25.49■■□□□ 1.67
RAPGEF3-220ENST00000549347 ADGRL3Q9HAR2 1447 aa25.47■■□□□ 1.67
RAPGEF3-220ENST00000549347 DCCP43146 1447 aa25.46■■□□□ 1.67
RAPGEF3-220ENST00000549347 FAM135BQ49AJ0 1406 aa25.46■■□□□ 1.67
RAPGEF3-220ENST00000549347 ARHGEF28Q8N1W1 1705 aaKnown RBP25.46■■□□□ 1.67
RAPGEF3-220ENST00000549347 CCER1Q8TC90 406 aaPredicted RBP25.45■■□□□ 1.66
RAPGEF3-220ENST00000549347 UBAP1LF5GYI3 381 aa25.44■■□□□ 1.66
RAPGEF3-220ENST00000549347 TOM1O60784 492 aa25.43■■□□□ 1.66
RAPGEF3-220ENST00000549347 STK26Q9P289 416 aa25.43■■□□□ 1.66
RAPGEF3-220ENST00000549347 CDC42BPGQ6DT37 1551 aa25.41■■□□□ 1.66
RAPGEF3-220ENST00000549347 SIRT1Q96EB6 747 aa25.41■■□□□ 1.66
RAPGEF3-220ENST00000549347 C14orf37Q86TY3 774 aa25.4■■□□□ 1.66
RAPGEF3-220ENST00000549347 C19orf44Q9H6X5 657 aa25.4■■□□□ 1.66
RAPGEF3-220ENST00000549347 PLEKHH1Q9ULM0 1364 aa25.39■■□□□ 1.65
RAPGEF3-220ENST00000549347 RALGAPBQ86X10 1494 aa25.38■■□□□ 1.65
RAPGEF3-220ENST00000549347 ADGRB2O60241 1585 aa25.37■■□□□ 1.65
RAPGEF3-220ENST00000549347 NBPF1Q3BBV0 1214 aa25.36■■□□□ 1.65
RAPGEF3-220ENST00000549347 NBPF8Q3BBV2 869 aa25.36■■□□□ 1.65
RAPGEF3-220ENST00000549347 ILDR1Q86SU0 546 aaPredicted RBP25.36■■□□□ 1.65
RAPGEF3-220ENST00000549347 TIMELESSQ9UNS1 1208 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms