RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 SETD1AO15047 1707 aaKnown RBP24.13■■□□□ 1.45
CHMP1A-206ENST00000549139 PHLPP1O60346 1717 aa24.13■■□□□ 1.45
CHMP1A-206ENST00000549139 SLC52A1Q9NWF4 448 aa24.13■■□□□ 1.45
CHMP1A-206ENST00000549139 JCADQ9P266 1359 aa24.13■■□□□ 1.45
CHMP1A-206ENST00000549139 ANKRD30AQ9BXX3 1397 aa24.12■■□□□ 1.45
CHMP1A-206ENST00000549139 CHD2O14647 1828 aaKnown RBP24.12■■□□□ 1.45
CHMP1A-206ENST00000549139 ZFYVE9O95405 1425 aa24.11■■□□□ 1.45
CHMP1A-206ENST00000549139 CHIC2Q9UKJ5 165 aa24.1■■□□□ 1.45
CHMP1A-206ENST00000549139 FAM50AQ14320 339 aaKnown RBP24.09■■□□□ 1.45
CHMP1A-206ENST00000549139 COL16A1Q07092 1604 aaPredicted RBP24.09■■□□□ 1.45
CHMP1A-206ENST00000549139 PLEKHG1Q9ULL1 1385 aa24.08■■□□□ 1.45
CHMP1A-206ENST00000549139 MYO5BQ9ULV0 1848 aa24.07■■□□□ 1.44
CHMP1A-206ENST00000549139 RPRD2Q5VT52 1461 aaKnown RBP24.06■■□□□ 1.44
CHMP1A-206ENST00000549139 BCANQ96GW7 911 aa24.05■■□□□ 1.44
CHMP1A-206ENST00000549139 NCOA3Q9Y6Q9 1424 aa24.04■■□□□ 1.44
CHMP1A-206ENST00000549139 LRP6O75581 1613 aa24.04■■□□□ 1.44
CHMP1A-206ENST00000549139 ADGRL2O95490 1459 aa24.04■■□□□ 1.44
CHMP1A-206ENST00000549139 RIMS2Q9UQ26 1411 aa24.02■■□□□ 1.44
CHMP1A-206ENST00000549139 TBX22Q9Y458 520 aa24.02■■□□□ 1.44
CHMP1A-206ENST00000549139 TMEM131LA2VDJ0 1609 aa24.02■■□□□ 1.44
CHMP1A-206ENST00000549139 GCC2Q8IWJ2 1684 aa24■■□□□ 1.43
CHMP1A-206ENST00000549139 SPATA31A6Q5VVP1 1343 aa24■■□□□ 1.43
CHMP1A-206ENST00000549139 ADAMTS13Q76LX8 1427 aa23.98■■□□□ 1.43
CHMP1A-206ENST00000549139 AHDC1Q5TGY3 1603 aaPredicted RBP23.98■■□□□ 1.43
CHMP1A-206ENST00000549139 HDGFP51858 240 aaKnown RBP23.97■■□□□ 1.43
CHMP1A-206ENST00000549139 UPF1Q92900 1129 aaKnown RBP eCLIP23.97■■□□□ 1.439e-16■■■■■ 41.3
CHMP1A-206ENST00000549139 RRBP1Q9P2E9 1410 aaKnown RBP23.96■■□□□ 1.43
CHMP1A-206ENST00000549139 ANKRD50Q9ULJ7 1429 aa23.96■■□□□ 1.43
CHMP1A-206ENST00000549139 PPP1R15AO75807 674 aaPredicted RBP23.96■■□□□ 1.43
CHMP1A-206ENST00000549139 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.96■■□□□ 1.43
CHMP1A-206ENST00000549139 ZNF772Q68DY9 489 aaPredicted RBP23.95■■□□□ 1.42
CHMP1A-206ENST00000549139 SHPRHQ149N8 1683 aa23.95■■□□□ 1.42
CHMP1A-206ENST00000549139 CADPS2Q86UW7 1296 aa23.93■■□□□ 1.42
CHMP1A-206ENST00000549139 C19orf44Q9H6X5 657 aa23.93■■□□□ 1.42
CHMP1A-206ENST00000549139 PIK3R4Q99570 1358 aa23.92■■□□□ 1.42
CHMP1A-206ENST00000549139 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.92■■□□□ 1.42
CHMP1A-206ENST00000549139 DIP2AQ14689 1571 aa23.91■■□□□ 1.42
CHMP1A-206ENST00000549139 MEX3CQ5U5Q3 659 aaKnown RBP23.9■■□□□ 1.42
CHMP1A-206ENST00000549139 C14orf37Q86TY3 774 aa23.9■■□□□ 1.42
CHMP1A-206ENST00000549139 TRIM52Q96A61 297 aa23.89■■□□□ 1.41
CHMP1A-206ENST00000549139 ATF3P18847 181 aa23.88■■□□□ 1.41
CHMP1A-206ENST00000549139 NUTM2DQ5VT03 806 aaPredicted RBP23.87■■□□□ 1.41
CHMP1A-206ENST00000549139 BRINP3Q76B58 766 aa23.87■■□□□ 1.41
CHMP1A-206ENST00000549139 UNC13BO14795 1591 aa23.86■■□□□ 1.41
CHMP1A-206ENST00000549139 PTPRUQ92729 1446 aa23.86■■□□□ 1.41
CHMP1A-206ENST00000549139 ROCK1Q13464 1354 aa23.86■■□□□ 1.41
CHMP1A-206ENST00000549139 E9PCH4 1651 aa23.86■■□□□ 1.41
CHMP1A-206ENST00000549139 CHGAP10645 457 aaKnown RBP23.85■■□□□ 1.41
CHMP1A-206ENST00000549139 ITGAEP38570 1179 aa23.85■■□□□ 1.41
CHMP1A-206ENST00000549139 CDK12Q9NYV4 1490 aaPredicted RBP23.84■■□□□ 1.41
CHMP1A-206ENST00000549139 RXRBP28702 533 aa23.84■■□□□ 1.41
CHMP1A-206ENST00000549139 AMOTL2Q9Y2J4 779 aa23.84■■□□□ 1.41
CHMP1A-206ENST00000549139 TRPM2O94759 1503 aa23.82■■□□□ 1.4
CHMP1A-206ENST00000549139 DCCP43146 1447 aa23.81■■□□□ 1.4
CHMP1A-206ENST00000549139 SRCAPQ6ZRS2 3230 aa23.81■■□□□ 1.4
CHMP1A-206ENST00000549139 SETD5Q9C0A6 1442 aa23.8■■□□□ 1.4
CHMP1A-206ENST00000549139 ASXL1Q8IXJ9 1541 aa23.79■■□□□ 1.4
CHMP1A-206ENST00000549139 NUTM2BA6NNL0 878 aaPredicted RBP23.78■■□□□ 1.4
CHMP1A-206ENST00000549139 NUTM2EB1AL46 878 aaPredicted RBP23.78■■□□□ 1.4
CHMP1A-206ENST00000549139 NUTM2AQ8IVF1 878 aaPredicted RBP23.78■■□□□ 1.4
CHMP1A-206ENST00000549139 AFF2P51816 1311 aa23.78■■□□□ 1.4
CHMP1A-206ENST00000549139 IQGAP3Q86VI3 1631 aa23.77■■□□□ 1.4
CHMP1A-206ENST00000549139 XRN1Q8IZH2 1706 aaKnown RBP23.77■■□□□ 1.4
CHMP1A-206ENST00000549139 NRXN3Q9Y4C0 1643 aa23.77■■□□□ 1.4
CHMP1A-206ENST00000549139 MST1RQ04912 1400 aa23.76■■□□□ 1.39
CHMP1A-206ENST00000549139 NHSL1Q5SYE7 1610 aa23.76■■□□□ 1.39
CHMP1A-206ENST00000549139 SETBP1Q9Y6X0 1596 aa23.73■■□□□ 1.39
CHMP1A-206ENST00000549139 RGS12O14924 1447 aa23.7■■□□□ 1.38
CHMP1A-206ENST00000549139 LRRC59Q96AG4 307 aaKnown RBP23.7■■□□□ 1.38
CHMP1A-206ENST00000549139 METP08581 1390 aa23.69■■□□□ 1.38
CHMP1A-206ENST00000549139 PNPLA6Q8IY17 1366 aa23.68■■□□□ 1.38
CHMP1A-206ENST00000549139 NUP155O75694 1391 aa23.67■■□□□ 1.38
CHMP1A-206ENST00000549139 RBM6P78332 1123 aaKnown RBP23.67■■□□□ 1.38
CHMP1A-206ENST00000549139 DDX17Q92841 729 aaKnown RBP23.67■■□□□ 1.38
CHMP1A-206ENST00000549139 QTRT2Q9H974 415 aaKnown RBP23.66■■□□□ 1.38
CHMP1A-206ENST00000549139 ADGRL3Q9HAR2 1447 aa23.66■■□□□ 1.38
CHMP1A-206ENST00000549139 C8orf37Q96NL8 207 aa23.65■■□□□ 1.38
CHMP1A-206ENST00000549139 NAIPQ13075 1403 aa23.64■■□□□ 1.37
CHMP1A-206ENST00000549139 NALCNQ8IZF0 1738 aa23.62■■□□□ 1.37
CHMP1A-206ENST00000549139 SPHKAPQ2M3C7 1700 aa23.61■■□□□ 1.37
CHMP1A-206ENST00000549139 HFM1A2PYH4 1435 aa23.6■■□□□ 1.37
CHMP1A-206ENST00000549139 LAMC1P11047 1609 aa23.6■■□□□ 1.37
CHMP1A-206ENST00000549139 C1orf167Q5SNV9 1468 aa23.58■■□□□ 1.37
CHMP1A-206ENST00000549139 ZNF326Q5BKZ1 582 aaKnown RBP23.57■■□□□ 1.36
CHMP1A-206ENST00000549139 NEXMIFQ5QGS0 1516 aa23.57■■□□□ 1.36
CHMP1A-206ENST00000549139 NGLY1Q96IV0 654 aa23.56■■□□□ 1.36
CHMP1A-206ENST00000549139 ADAMTS2O95450 1211 aa23.55■■□□□ 1.36
CHMP1A-206ENST00000549139 SOS2Q07890 1332 aaPredicted RBP23.55■■□□□ 1.36
CHMP1A-206ENST00000549139 EP400Q96L91 3159 aa23.53■■□□□ 1.36
CHMP1A-206ENST00000549139 CLTCL1P53675 1640 aa23.52■■□□□ 1.36
CHMP1A-206ENST00000549139 ATAD2Q6PL18 1390 aa23.52■■□□□ 1.36
CHMP1A-206ENST00000549139 PTCH1Q13635 1447 aa23.51■■□□□ 1.35
CHMP1A-206ENST00000549139 FNBP4Q8N3X1 1017 aaPredicted RBP23.5■■□□□ 1.35
CHMP1A-206ENST00000549139 ORAI2Q96SN7 254 aa23.5■■□□□ 1.35
CHMP1A-206ENST00000549139 USP21Q9UK80 565 aa23.49■■□□□ 1.35
CHMP1A-206ENST00000549139 ROBO2Q9HCK4 1378 aa23.49■■□□□ 1.35
CHMP1A-206ENST00000549139 TRPC5Q9UL62 973 aaPredicted RBP23.48■■□□□ 1.35
CHMP1A-206ENST00000549139 PRAG1Q86YV5 1406 aa23.48■■□□□ 1.35
CHMP1A-206ENST00000549139 ATRNO75882 1429 aa23.47■■□□□ 1.35
CHMP1A-206ENST00000549139 COL22A1Q8NFW1 1626 aaPredicted RBP23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms