RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 CROCC2H7BZ55 1655 aa20.1■□□□□ 0.81
SCAF11-208ENST00000546534 LMTK2Q8IWU2 1503 aa20.1■□□□□ 0.81
SCAF11-208ENST00000546534 NKTRP30414 1462 aaKnown RBP20.1■□□□□ 0.81
SCAF11-208ENST00000546534 SLAIN2Q9P270 581 aa20.09■□□□□ 0.81
SCAF11-208ENST00000546534 DAPK1P53355 1430 aa20.09■□□□□ 0.81
SCAF11-208ENST00000546534 MSH6P52701 1360 aa20.08■□□□□ 0.81
SCAF11-208ENST00000546534 BCANQ96GW7 911 aa20.08■□□□□ 0.81
SCAF11-208ENST00000546534 NOS1P29475 1434 aa20.08■□□□□ 0.8
SCAF11-208ENST00000546534 NWD1Q149M9 1564 aa20.08■□□□□ 0.8
SCAF11-208ENST00000546534 LOC105371045A0A1W2PR82 267 aa20.07■□□□□ 0.8
SCAF11-208ENST00000546534 CHIC2Q9UKJ5 165 aa20.07■□□□□ 0.8
SCAF11-208ENST00000546534 JCADQ9P266 1359 aa20.07■□□□□ 0.8
SCAF11-208ENST00000546534 PTPN23Q9H3S7 1636 aa20.06■□□□□ 0.8
SCAF11-208ENST00000546534 ADGRB3O60242 1522 aa20.06■□□□□ 0.8
SCAF11-208ENST00000546534 SETD1AO15047 1707 aaKnown RBP20.05■□□□□ 0.8
SCAF11-208ENST00000546534 SLC52A1Q9NWF4 448 aa20.04■□□□□ 0.8
SCAF11-208ENST00000546534 ANKRD30AQ9BXX3 1397 aa20.04■□□□□ 0.8
SCAF11-208ENST00000546534 PHLPP1O60346 1717 aa20.04■□□□□ 0.8
SCAF11-208ENST00000546534 FGD6Q6ZV73 1430 aa20.01■□□□□ 0.79
SCAF11-208ENST00000546534 PLEKHG1Q9ULL1 1385 aa20■□□□□ 0.79
SCAF11-208ENST00000546534 ZFYVE9O95405 1425 aa20■□□□□ 0.79
SCAF11-208ENST00000546534 LRP6O75581 1613 aa19.98■□□□□ 0.79
SCAF11-208ENST00000546534 COL16A1Q07092 1604 aaPredicted RBP19.98■□□□□ 0.79
SCAF11-208ENST00000546534 PPP1R15AO75807 674 aaPredicted RBP19.97■□□□□ 0.79
SCAF11-208ENST00000546534 RIMS2Q9UQ26 1411 aa19.96■□□□□ 0.79
SCAF11-208ENST00000546534 TBX22Q9Y458 520 aa19.96■□□□□ 0.79
SCAF11-208ENST00000546534 CHD2O14647 1828 aaKnown RBP19.96■□□□□ 0.79
SCAF11-208ENST00000546534 SPATA31A6Q5VVP1 1343 aa19.96■□□□□ 0.79
SCAF11-208ENST00000546534 HDGFP51858 240 aaKnown RBP19.95■□□□□ 0.78
SCAF11-208ENST00000546534 APLP2Q06481 763 aa19.95■□□□□ 0.78
SCAF11-208ENST00000546534 MEX3CQ5U5Q3 659 aaKnown RBP19.95■□□□□ 0.78
SCAF11-208ENST00000546534 UPF1Q92900 1129 aaKnown RBP eCLIP19.95■□□□□ 0.78
SCAF11-208ENST00000546534 NCOA3Q9Y6Q9 1424 aa19.94■□□□□ 0.78
SCAF11-208ENST00000546534 RPRD2Q5VT52 1461 aaKnown RBP19.94■□□□□ 0.78
SCAF11-208ENST00000546534 C14orf37Q86TY3 774 aa19.94■□□□□ 0.78
SCAF11-208ENST00000546534 ZNF772Q68DY9 489 aaPredicted RBP19.93■□□□□ 0.78
SCAF11-208ENST00000546534 TRIM52Q96A61 297 aa19.93■□□□□ 0.78
SCAF11-208ENST00000546534 ADGRL2O95490 1459 aa19.92■□□□□ 0.78
SCAF11-208ENST00000546534 C19orf44Q9H6X5 657 aa19.91■□□□□ 0.78
SCAF11-208ENST00000546534 TMEM131LA2VDJ0 1609 aa19.91■□□□□ 0.78
SCAF11-208ENST00000546534 MYO5BQ9ULV0 1848 aa19.9■□□□□ 0.78
SCAF11-208ENST00000546534 CADPS2Q86UW7 1296 aa19.9■□□□□ 0.78
SCAF11-208ENST00000546534 GCC2Q8IWJ2 1684 aa19.9■□□□□ 0.78
SCAF11-208ENST00000546534 CHGAP10645 457 aaKnown RBP19.89■□□□□ 0.77
SCAF11-208ENST00000546534 AHDC1Q5TGY3 1603 aaPredicted RBP19.89■□□□□ 0.77
SCAF11-208ENST00000546534 NUTM2DQ5VT03 806 aaPredicted RBP19.89■□□□□ 0.77
SCAF11-208ENST00000546534 ADAMTS13Q76LX8 1427 aa19.89■□□□□ 0.77
SCAF11-208ENST00000546534 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.89■□□□□ 0.77
SCAF11-208ENST00000546534 ANKRD50Q9ULJ7 1429 aa19.89■□□□□ 0.77
SCAF11-208ENST00000546534 ATF3P18847 181 aa19.88■□□□□ 0.77
SCAF11-208ENST00000546534 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.87■□□□□ 0.77
SCAF11-208ENST00000546534 RXRBP28702 533 aa19.86■□□□□ 0.77
SCAF11-208ENST00000546534 SHPRHQ149N8 1683 aa19.85■□□□□ 0.77
SCAF11-208ENST00000546534 NUTM2BA6NNL0 878 aaPredicted RBP19.85■□□□□ 0.77
SCAF11-208ENST00000546534 NUTM2EB1AL46 878 aaPredicted RBP19.85■□□□□ 0.77
SCAF11-208ENST00000546534 BRINP3Q76B58 766 aa19.85■□□□□ 0.77
SCAF11-208ENST00000546534 NUTM2AQ8IVF1 878 aaPredicted RBP19.85■□□□□ 0.77
SCAF11-208ENST00000546534 PIK3R4Q99570 1358 aa19.84■□□□□ 0.77
SCAF11-208ENST00000546534 FAM50AQ14320 339 aaKnown RBP19.84■□□□□ 0.77
SCAF11-208ENST00000546534 AMOTL2Q9Y2J4 779 aa19.83■□□□□ 0.77
SCAF11-208ENST00000546534 DIP2AQ14689 1571 aa19.83■□□□□ 0.76
SCAF11-208ENST00000546534 PTPRUQ92729 1446 aa19.81■□□□□ 0.76
SCAF11-208ENST00000546534 CDK12Q9NYV4 1490 aaPredicted RBP19.79■□□□□ 0.76
SCAF11-208ENST00000546534 AFF2P51816 1311 aa19.79■□□□□ 0.76
SCAF11-208ENST00000546534 TRPM2O94759 1503 aa19.78■□□□□ 0.76
SCAF11-208ENST00000546534 UNC13BO14795 1591 aa19.77■□□□□ 0.76
SCAF11-208ENST00000546534 E9PCH4 1651 aa19.76■□□□□ 0.75
SCAF11-208ENST00000546534 ASXL1Q8IXJ9 1541 aa19.76■□□□□ 0.75
SCAF11-208ENST00000546534 DCCP43146 1447 aa19.76■□□□□ 0.75
SCAF11-208ENST00000546534 SETD5Q9C0A6 1442 aa19.76■□□□□ 0.75
SCAF11-208ENST00000546534 LRRC59Q96AG4 307 aaKnown RBP19.73■□□□□ 0.75
SCAF11-208ENST00000546534 MST1RQ04912 1400 aa19.73■□□□□ 0.75
SCAF11-208ENST00000546534 DCAF8L1A6NGE4 600 aa19.72■□□□□ 0.75
SCAF11-208ENST00000546534 QTRT2Q9H974 415 aaKnown RBP19.72■□□□□ 0.75
SCAF11-208ENST00000546534 RGS12O14924 1447 aa19.71■□□□□ 0.75
SCAF11-208ENST00000546534 DDX17Q92841 729 aaKnown RBP19.71■□□□□ 0.75
SCAF11-208ENST00000546534 C8orf37Q96NL8 207 aa19.71■□□□□ 0.75
SCAF11-208ENST00000546534 XRN1Q8IZH2 1706 aaKnown RBP19.7■□□□□ 0.74
SCAF11-208ENST00000546534 IQGAP3Q86VI3 1631 aa19.69■□□□□ 0.74
SCAF11-208ENST00000546534 RBM6P78332 1123 aaKnown RBP19.69■□□□□ 0.74
SCAF11-208ENST00000546534 NHSL1Q5SYE7 1610 aa19.69■□□□□ 0.74
SCAF11-208ENST00000546534 PNPLA6Q8IY17 1366 aa19.69■□□□□ 0.74
SCAF11-208ENST00000546534 NRXN3Q9Y4C0 1643 aa19.69■□□□□ 0.74
SCAF11-208ENST00000546534 NUP155O75694 1391 aa19.68■□□□□ 0.74
SCAF11-208ENST00000546534 METP08581 1390 aa19.68■□□□□ 0.74
SCAF11-208ENST00000546534 SETBP1Q9Y6X0 1596 aa19.66■□□□□ 0.74
SCAF11-208ENST00000546534 ROCK1Q13464 1354 aa19.66■□□□□ 0.74
SCAF11-208ENST00000546534 ADGRL3Q9HAR2 1447 aa19.65■□□□□ 0.74
SCAF11-208ENST00000546534 ADAMTS2O95450 1211 aa19.63■□□□□ 0.73
SCAF11-208ENST00000546534 ZNF326Q5BKZ1 582 aaKnown RBP19.63■□□□□ 0.73
SCAF11-208ENST00000546534 NGLY1Q96IV0 654 aa19.63■□□□□ 0.73
SCAF11-208ENST00000546534 C1orf167Q5SNV9 1468 aa19.59■□□□□ 0.73
SCAF11-208ENST00000546534 NALCNQ8IZF0 1738 aa19.58■□□□□ 0.72
SCAF11-208ENST00000546534 ATAD2Q6PL18 1390 aa19.57■□□□□ 0.72
SCAF11-208ENST00000546534 ITGAEP38570 1179 aa19.56■□□□□ 0.72
SCAF11-208ENST00000546534 ORAI2Q96SN7 254 aa19.56■□□□□ 0.72
SCAF11-208ENST00000546534 USP21Q9UK80 565 aa19.56■□□□□ 0.72
SCAF11-208ENST00000546534 SOS2Q07890 1332 aaPredicted RBP19.55■□□□□ 0.72
SCAF11-208ENST00000546534 SPHKAPQ2M3C7 1700 aa19.55■□□□□ 0.72
SCAF11-208ENST00000546534 TRPC5Q9UL62 973 aaPredicted RBP19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms