RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 KANK1Q14678 1352 aa19.07■□□□□ 0.64
HOXC11-202ENST00000546378 RALBP1Q15311 655 aa19.06■□□□□ 0.64
HOXC11-202ENST00000546378 PANK1Q8TE04 598 aa19.05■□□□□ 0.64
HOXC11-202ENST00000546378 NUTM2DQ5VT03 806 aaPredicted RBP19.05■□□□□ 0.64
HOXC11-202ENST00000546378 FAM135AQ9P2D6 1515 aa19.04■□□□□ 0.64
HOXC11-202ENST00000546378 CROCC2H7BZ55 1655 aa19.04■□□□□ 0.64
HOXC11-202ENST00000546378 DDRGK1Q96HY6 314 aa19.03■□□□□ 0.64
HOXC11-202ENST00000546378 RIMBP3CA6NJZ7 1639 aa19.01■□□□□ 0.63
HOXC11-202ENST00000546378 RIMBP3BA6NNM3 1639 aa19.01■□□□□ 0.63
HOXC11-202ENST00000546378 RIMBP3Q9UFD9 1639 aa19.01■□□□□ 0.63
HOXC11-202ENST00000546378 SAFB2Q14151 953 aaKnown RBP eCLIP19.01■□□□□ 0.63
HOXC11-202ENST00000546378 DUOX2Q9NRD8 1548 aa19.01■□□□□ 0.63
HOXC11-202ENST00000546378 POGKQ9P215 609 aa19■□□□□ 0.63
HOXC11-202ENST00000546378 FOXD4L1Q9NU39 408 aa18.99■□□□□ 0.63
HOXC11-202ENST00000546378 SPINK5Q9NQ38 1064 aaPredicted RBP18.98■□□□□ 0.63
HOXC11-202ENST00000546378 ABCA9Q8IUA7 1624 aa18.97■□□□□ 0.63
HOXC11-202ENST00000546378 SEC24BO95487 1268 aa18.97■□□□□ 0.63
HOXC11-202ENST00000546378 ATP7AQ04656 1500 aa18.97■□□□□ 0.63
HOXC11-202ENST00000546378 TMF1P82094 1093 aa18.96■□□□□ 0.63
HOXC11-202ENST00000546378 ZNF518AQ6AHZ1 1483 aa18.96■□□□□ 0.63
HOXC11-202ENST00000546378 ERBINQ96RT1 1412 aa18.96■□□□□ 0.63
HOXC11-202ENST00000546378 GOLGA2Q08379 1002 aa18.96■□□□□ 0.63
HOXC11-202ENST00000546378 TNNQ9UQP3 1299 aa18.96■□□□□ 0.63
HOXC11-202ENST00000546378 TEX14Q8IWB6 1497 aa18.95■□□□□ 0.62
HOXC11-202ENST00000546378 ZBTB7CA1YPR0 619 aa18.95■□□□□ 0.62
HOXC11-202ENST00000546378 RTEL1-TNFRSF6BF6WH68 1400 aa18.95■□□□□ 0.62
HOXC11-202ENST00000546378 FAM161AQ3B820 660 aa18.94■□□□□ 0.62
HOXC11-202ENST00000546378 SPATA31E1Q6ZUB1 1445 aa18.94■□□□□ 0.62
HOXC11-202ENST00000546378 DMRT2Q9Y5R5 561 aa18.93■□□□□ 0.62
HOXC11-202ENST00000546378 TPRNQ4KMQ1 711 aa18.92■□□□□ 0.62
HOXC11-202ENST00000546378 ZFYVE16Q7Z3T8 1539 aa18.92■□□□□ 0.62
HOXC11-202ENST00000546378 PLA2R1Q13018 1463 aa18.92■□□□□ 0.62
HOXC11-202ENST00000546378 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.92■□□□□ 0.62
HOXC11-202ENST00000546378 ARID3AQ99856 593 aa18.92■□□□□ 0.62
HOXC11-202ENST00000546378 POGZQ7Z3K3 1410 aa18.91■□□□□ 0.62
HOXC11-202ENST00000546378 DISP3Q9P2K9 1392 aa18.91■□□□□ 0.62
HOXC11-202ENST00000546378 A2MP01023 1474 aa18.91■□□□□ 0.62
HOXC11-202ENST00000546378 IGHDP01880 384 aa18.91■□□□□ 0.62
HOXC11-202ENST00000546378 ESF1Q9H501 851 aaKnown RBP18.91■□□□□ 0.62
HOXC11-202ENST00000546378 YEATS2Q9ULM3 1422 aa18.91■□□□□ 0.62
HOXC11-202ENST00000546378 BRD4O60885 1362 aaPredicted RBP18.91■□□□□ 0.62
HOXC11-202ENST00000546378 NAP1L5Q96NT1 182 aaPredicted RBP18.91■□□□□ 0.62
HOXC11-202ENST00000546378 RNF123Q5XPI4 1314 aa18.9■□□□□ 0.62
HOXC11-202ENST00000546378 STAG3Q9UJ98 1225 aa18.9■□□□□ 0.62
HOXC11-202ENST00000546378 TSPOAP1O95153 1857 aa18.89■□□□□ 0.61
HOXC11-202ENST00000546378 MFAP1P55081 439 aaKnown RBP18.89■□□□□ 0.61
HOXC11-202ENST00000546378 ARAP3Q8WWN8 1544 aa18.88■□□□□ 0.61
HOXC11-202ENST00000546378 MS4A1P11836 297 aa18.87■□□□□ 0.61
HOXC11-202ENST00000546378 MAST1Q9Y2H9 1570 aa18.87■□□□□ 0.61
HOXC11-202ENST00000546378 PPP2R1AP30153 589 aa18.87■□□□□ 0.61
HOXC11-202ENST00000546378 FBXO31Q5XUX0 539 aaPredicted RBP18.87■□□□□ 0.61
HOXC11-202ENST00000546378 CENPQQ7L2Z9 268 aaPredicted RBP18.86■□□□□ 0.61
HOXC11-202ENST00000546378 C8orf34Q49A92 452 aa18.85■□□□□ 0.61
HOXC11-202ENST00000546378 CFAP65Q6ZU64 1925 aaKnown RBP18.85■□□□□ 0.61
HOXC11-202ENST00000546378 PDE3BQ13370 1112 aa18.85■□□□□ 0.61
HOXC11-202ENST00000546378 CFAP70Q5T0N1 1121 aa18.85■□□□□ 0.61
HOXC11-202ENST00000546378 PLXNC1O60486 1568 aa18.85■□□□□ 0.61
HOXC11-202ENST00000546378 BCORL1Q5H9F3 1711 aa18.84■□□□□ 0.61
HOXC11-202ENST00000546378 USP35Q9P2H5 1018 aa18.84■□□□□ 0.61
HOXC11-202ENST00000546378 PLEKHH1Q9ULM0 1364 aa18.84■□□□□ 0.61
HOXC11-202ENST00000546378 DUSP27Q5VZP5 1158 aa18.84■□□□□ 0.61
HOXC11-202ENST00000546378 PER1O15534 1290 aaPredicted RBP18.83■□□□□ 0.6
HOXC11-202ENST00000546378 UPF2Q9HAU5 1272 aaKnown RBP18.82■□□□□ 0.6
HOXC11-202ENST00000546378 HSP90AA1P07900 732 aaKnown RBP18.81■□□□□ 0.6
HOXC11-202ENST00000546378 NEO1Q92859 1461 aa18.81■□□□□ 0.6
HOXC11-202ENST00000546378 U2SURPO15042 1029 aaKnown RBP18.81■□□□□ 0.6
HOXC11-202ENST00000546378 KDM5DQ9BY66 1539 aa18.81■□□□□ 0.6
HOXC11-202ENST00000546378 TMEM132EQ6IEE7 984 aa18.8■□□□□ 0.6
HOXC11-202ENST00000546378 ADGRF5Q8IZF2 1346 aa18.79■□□□□ 0.6
HOXC11-202ENST00000546378 UGGT1Q9NYU2 1555 aa18.79■□□□□ 0.6
HOXC11-202ENST00000546378 TRAK1Q9UPV9 953 aa18.78■□□□□ 0.6
HOXC11-202ENST00000546378 PANK2Q9BZ23 570 aa18.78■□□□□ 0.6
HOXC11-202ENST00000546378 IDI1Q13907 227 aa18.77■□□□□ 0.6
HOXC11-202ENST00000546378 FTSJ3Q8IY81 847 aaKnown RBP18.76■□□□□ 0.59
HOXC11-202ENST00000546378 STK26Q9P289 416 aa18.76■□□□□ 0.59
HOXC11-202ENST00000546378 ATP10AO60312 1499 aa18.76■□□□□ 0.59
HOXC11-202ENST00000546378 MLH3Q9UHC1 1453 aa18.76■□□□□ 0.59
HOXC11-202ENST00000546378 KIDINS220Q9ULH0 1771 aa18.76■□□□□ 0.59
HOXC11-202ENST00000546378 CENPJQ9HC77 1338 aaPredicted RBP18.75■□□□□ 0.59
HOXC11-202ENST00000546378 ELL2O00472 640 aaPredicted RBP18.75■□□□□ 0.59
HOXC11-202ENST00000546378 BECN1Q14457 450 aa18.75■□□□□ 0.59
HOXC11-202ENST00000546378 UNC13BO14795 1591 aa18.75■□□□□ 0.59
HOXC11-202ENST00000546378 LRPPRCP42704 1394 aaKnown RBP18.75■□□□□ 0.59
HOXC11-202ENST00000546378 APBB1O00213 710 aa18.75■□□□□ 0.59
HOXC11-202ENST00000546378 TSR2Q969E8 191 aaKnown RBP18.75■□□□□ 0.59
HOXC11-202ENST00000546378 INO80Q9ULG1 1556 aaPredicted RBP18.75■□□□□ 0.59
HOXC11-202ENST00000546378 TESK2Q96S53 571 aa18.74■□□□□ 0.59
HOXC11-202ENST00000546378 PRAG1Q86YV5 1406 aa18.74■□□□□ 0.59
HOXC11-202ENST00000546378 U2AF1L5P0DN76 240 aaPredicted RBP18.73■□□□□ 0.59
HOXC11-202ENST00000546378 U2AF1Q01081 240 aaKnown RBP eCLIP18.73■□□□□ 0.59
HOXC11-202ENST00000546378 IQGAP3Q86VI3 1631 aa18.72■□□□□ 0.59
HOXC11-202ENST00000546378 MORC1Q86VD1 984 aa18.72■□□□□ 0.59
HOXC11-202ENST00000546378 NPATQ14207 1427 aa18.72■□□□□ 0.59
HOXC11-202ENST00000546378 NCLP19338 710 aaKnown RBP18.71■□□□□ 0.59
HOXC11-202ENST00000546378 COL17A1Q9UMD9 1497 aaPredicted RBP18.71■□□□□ 0.59
HOXC11-202ENST00000546378 ITPRIPQ8IWB1 547 aa18.71■□□□□ 0.59
HOXC11-202ENST00000546378 HECW2Q9P2P5 1572 aa18.7■□□□□ 0.58
HOXC11-202ENST00000546378 RLBP1P12271 317 aa18.7■□□□□ 0.58
HOXC11-202ENST00000546378 CEBPAP49715 358 aaPredicted RBP18.69■□□□□ 0.58
HOXC11-202ENST00000546378 SLFN5Q08AF3 891 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms