RNA–Protein interactions for RNA: ENST00000546080.5

SRP54-202, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 2,187 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-202ENST00000546080 RSPH4AQ5TD94 716 aa18.37■□□□□ 0.53
SRP54-202ENST00000546080 FAM43AQ8N2R8 423 aa18.37■□□□□ 0.53
SRP54-202ENST00000546080 VIRMAQ69YN4 1812 aaKnown RBP18.37■□□□□ 0.53
SRP54-202ENST00000546080 EIF5BO60841 1220 aaKnown RBP18.37■□□□□ 0.53
SRP54-202ENST00000546080 NKTRP30414 1462 aaKnown RBP18.36■□□□□ 0.53
SRP54-202ENST00000546080 PREX2Q70Z35 1606 aa18.35■□□□□ 0.53
SRP54-202ENST00000546080 IQGAP3Q86VI3 1631 aa18.35■□□□□ 0.53
SRP54-202ENST00000546080 AMER1Q5JTC6 1135 aaPredicted RBP18.35■□□□□ 0.53
SRP54-202ENST00000546080 PIK3C2GO75747 1445 aa18.35■□□□□ 0.53
SRP54-202ENST00000546080 FBLN2P98095 1184 aa18.34■□□□□ 0.53
SRP54-202ENST00000546080 TRMT2AQ8IZ69 625 aaKnown RBP18.34■□□□□ 0.53
SRP54-202ENST00000546080 CDC42BPBQ9Y5S2 1711 aa18.34■□□□□ 0.53
SRP54-202ENST00000546080 SYNMO15061 1565 aa18.34■□□□□ 0.53
SRP54-202ENST00000546080 DNAJC5Q9H3Z4 198 aa18.34■□□□□ 0.53
SRP54-202ENST00000546080 ASXL1Q8IXJ9 1541 aa18.33■□□□□ 0.52
SRP54-202ENST00000546080 CCDC146Q8IYE0 955 aa18.32■□□□□ 0.52
SRP54-202ENST00000546080 MAST1Q9Y2H9 1570 aa18.32■□□□□ 0.52
SRP54-202ENST00000546080 RSPH6AQ9H0K4 717 aa18.32■□□□□ 0.52
SRP54-202ENST00000546080 SYCP2Q9BX26 1530 aa18.32■□□□□ 0.52
SRP54-202ENST00000546080 BCAR3O75815 825 aa18.31■□□□□ 0.52
SRP54-202ENST00000546080 BECN1Q14457 450 aa18.31■□□□□ 0.52
SRP54-202ENST00000546080 UBE2Q2Q8WVN8 375 aa18.31■□□□□ 0.52
SRP54-202ENST00000546080 ABCC2Q92887 1545 aa18.31■□□□□ 0.52
SRP54-202ENST00000546080 USP19O94966 1318 aa18.31■□□□□ 0.52
SRP54-202ENST00000546080 ATP10AO60312 1499 aa18.31■□□□□ 0.52
SRP54-202ENST00000546080 CDCA8Q53HL2 280 aa18.31■□□□□ 0.52
SRP54-202ENST00000546080 MAPK8IP3Q9UPT6 1336 aa18.3■□□□□ 0.52
SRP54-202ENST00000546080 E9PSI1 815 aa18.3■□□□□ 0.52
SRP54-202ENST00000546080 IGHDP01880 384 aa18.3■□□□□ 0.52
SRP54-202ENST00000546080 SPINK5Q9NQ38 1064 aaPredicted RBP18.3■□□□□ 0.52
SRP54-202ENST00000546080 IQGAP1P46940 1657 aa18.29■□□□□ 0.52
SRP54-202ENST00000546080 CGNL1Q0VF96 1302 aa18.29■□□□□ 0.52
SRP54-202ENST00000546080 APAF1O14727 1248 aa18.28■□□□□ 0.52
SRP54-202ENST00000546080 POGKQ9P215 609 aa18.28■□□□□ 0.52
SRP54-202ENST00000546080 PLXNC1O60486 1568 aa18.27■□□□□ 0.52
SRP54-202ENST00000546080 NINLQ9Y2I6 1382 aa18.26■□□□□ 0.51
SRP54-202ENST00000546080 MADDQ8WXG6 1647 aa18.26■□□□□ 0.51
SRP54-202ENST00000546080 NPC1L1Q9UHC9 1359 aa18.26■□□□□ 0.51
SRP54-202ENST00000546080 PDE3AQ14432 1141 aa18.25■□□□□ 0.51
SRP54-202ENST00000546080 SEC24BO95487 1268 aa18.25■□□□□ 0.51
SRP54-202ENST00000546080 CANXP27824 592 aaKnown RBP18.25■□□□□ 0.51
SRP54-202ENST00000546080 CLUAP1Q96AJ1 413 aa18.25■□□□□ 0.51
SRP54-202ENST00000546080 ARHGAP5Q13017 1502 aa18.25■□□□□ 0.51
SRP54-202ENST00000546080 L1TD1Q5T7N2 865 aaKnown RBP18.24■□□□□ 0.51
SRP54-202ENST00000546080 SLKQ9H2G2 1235 aaPredicted RBP18.24■□□□□ 0.51
SRP54-202ENST00000546080 SCAF11Q99590 1463 aaKnown RBP18.24■□□□□ 0.51
SRP54-202ENST00000546080 MYOM1P52179 1685 aa18.23■□□□□ 0.51
SRP54-202ENST00000546080 DUOX2Q9NRD8 1548 aa18.23■□□□□ 0.51
SRP54-202ENST00000546080 CENPJQ9HC77 1338 aaPredicted RBP18.23■□□□□ 0.51
SRP54-202ENST00000546080 NLRP1Q9C000 1473 aa18.22■□□□□ 0.51
SRP54-202ENST00000546080 NGEFQ8N5V2 710 aa18.22■□□□□ 0.51
SRP54-202ENST00000546080 UPF2Q9HAU5 1272 aaKnown RBP18.21■□□□□ 0.51
SRP54-202ENST00000546080 COG6Q9Y2V7 657 aa18.21■□□□□ 0.51
SRP54-202ENST00000546080 PANK1Q8TE04 598 aa18.2■□□□□ 0.5
SRP54-202ENST00000546080 DMRT2Q9Y5R5 561 aa18.19■□□□□ 0.5
SRP54-202ENST00000546080 TTC37Q6PGP7 1564 aa18.19■□□□□ 0.5
SRP54-202ENST00000546080 SCAPERQ9BY12 1400 aa18.18■□□□□ 0.5
SRP54-202ENST00000546080 KDM5AP29375 1690 aaKnown RBP18.18■□□□□ 0.5
SRP54-202ENST00000546080 SPHKAPQ2M3C7 1700 aa18.18■□□□□ 0.5
SRP54-202ENST00000546080 PMFBP1Q8TBY8 1022 aa18.17■□□□□ 0.5
SRP54-202ENST00000546080 ANTXR1Q9H6X2 564 aa18.17■□□□□ 0.5
SRP54-202ENST00000546080 RRAGDQ9NQL2 400 aaPredicted RBP18.15■□□□□ 0.5
SRP54-202ENST00000546080 ZMYM3Q14202 1370 aa18.15■□□□□ 0.5
SRP54-202ENST00000546080 TBC1D32Q96NH3 1257 aa18.15■□□□□ 0.5
SRP54-202ENST00000546080 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.15■□□□□ 0.51e-7■■□□□ 13.5
SRP54-202ENST00000546080 AAMPQ13685 434 aa18.14■□□□□ 0.49
SRP54-202ENST00000546080 WWC1Q8IX03 1113 aa18.14■□□□□ 0.49
SRP54-202ENST00000546080 STAC3Q96MF2 364 aa18.14■□□□□ 0.49
SRP54-202ENST00000546080 CEP152O94986 1710 aa18.13■□□□□ 0.49
SRP54-202ENST00000546080 TBC1D2Q9BYX2 928 aa18.13■□□□□ 0.49
SRP54-202ENST00000546080 TRPM2O94759 1503 aa18.12■□□□□ 0.49
SRP54-202ENST00000546080 GOLGA6L3A6NEY3 463 aa18.1■□□□□ 0.49
SRP54-202ENST00000546080 ARXQ96QS3 562 aa18.1■□□□□ 0.49
SRP54-202ENST00000546080 PDZRN3Q9UPQ7 1066 aa18.1■□□□□ 0.49
SRP54-202ENST00000546080 RARSP54136 660 aaKnown RBP18.09■□□□□ 0.49
SRP54-202ENST00000546080 PCDHB15Q9Y5E8 787 aa18.09■□□□□ 0.49
SRP54-202ENST00000546080 POLR3AO14802 1390 aaPredicted RBP18.09■□□□□ 0.49
SRP54-202ENST00000546080 SLC24A1O60721 1099 aa18.08■□□□□ 0.49
SRP54-202ENST00000546080 CHD1O14646 1710 aa18.08■□□□□ 0.49
SRP54-202ENST00000546080 CLTCL1P53675 1640 aa18.08■□□□□ 0.48
SRP54-202ENST00000546080 KIAA1210Q9ULL0 1709 aa18.07■□□□□ 0.48
SRP54-202ENST00000546080 ERVK-7P63135 1459 aa18.07■□□□□ 0.48
SRP54-202ENST00000546080 RWDD1Q9H446 243 aaPredicted RBP18.07■□□□□ 0.48
SRP54-202ENST00000546080 XRCC6P12956 609 aaKnown RBP eCLIP18.06■□□□□ 0.48
SRP54-202ENST00000546080 MCM4P33991 863 aa18.06■□□□□ 0.48
SRP54-202ENST00000546080 NEUROD2Q15784 382 aa18.06■□□□□ 0.48
SRP54-202ENST00000546080 CARD14Q9BXL6 1004 aa18.06■□□□□ 0.48
SRP54-202ENST00000546080 FSD2A1L4K1 749 aa18.05■□□□□ 0.48
SRP54-202ENST00000546080 RLBP1P12271 317 aa18.05■□□□□ 0.48
SRP54-202ENST00000546080 SPRYD3Q8NCJ5 442 aa18.05■□□□□ 0.48
SRP54-202ENST00000546080 RUNDC1Q96C34 613 aa18.04■□□□□ 0.48
SRP54-202ENST00000546080 PTPRTO14522 1441 aa18.04■□□□□ 0.48
SRP54-202ENST00000546080 TNNQ9UQP3 1299 aa18.04■□□□□ 0.48
SRP54-202ENST00000546080 RRP7AQ9Y3A4 280 aaKnown RBP18.04■□□□□ 0.48
SRP54-202ENST00000546080 SHPRHQ149N8 1683 aa18.03■□□□□ 0.48
SRP54-202ENST00000546080 BCL2L13Q9BXK5 485 aa18.03■□□□□ 0.48
SRP54-202ENST00000546080 GZF1Q9H116 711 aaPredicted RBP18.03■□□□□ 0.48
SRP54-202ENST00000546080 CHMP5Q9NZZ3 219 aa18.03■□□□□ 0.48
SRP54-202ENST00000546080 IQSEC2Q5JU85 1478 aa18.02■□□□□ 0.48
SRP54-202ENST00000546080 WDR63Q8IWG1 891 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 132.2 ms