RNA–Protein interactions for RNA: ENST00000544272.1

USP28-211, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 656 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-211ENST00000544272 PNMA3Q9UL41 463 aa9.03□□□□□ -0.96
USP28-211ENST00000544272 SPDYE5A6NIY4 337 aa9.02□□□□□ -0.97
USP28-211ENST00000544272 SPTLC1O15269 473 aa9.02□□□□□ -0.97
USP28-211ENST00000544272 RFC5P40937 340 aa9.02□□□□□ -0.97
USP28-211ENST00000544272 RIC3Q7Z5B4 369 aa9.02□□□□□ -0.97
USP28-211ENST00000544272 GJA5P36382 358 aa9.01□□□□□ -0.97
USP28-211ENST00000544272 PROX2Q3B8N5 592 aa9.01□□□□□ -0.97
USP28-211ENST00000544272 ARID3CA6NKF2 412 aa9□□□□□ -0.97
USP28-211ENST00000544272 DDX11L8A8MPP1 907 aa9□□□□□ -0.97
USP28-211ENST00000544272 APBB1O00213 710 aa9□□□□□ -0.97
USP28-211ENST00000544272 RSBN1LQ6PCB5 846 aaPredicted RBP9□□□□□ -0.97
USP28-211ENST00000544272 FNBP4Q8N3X1 1017 aaPredicted RBP9□□□□□ -0.97
USP28-211ENST00000544272 TMEM259Q4ZIN3 620 aa8.99□□□□□ -0.97
USP28-211ENST00000544272 POM121Q96HA1 1249 aa8.99□□□□□ -0.97
USP28-211ENST00000544272 ZBED2Q9BTP6 218 aa8.99□□□□□ -0.97
USP28-211ENST00000544272 ATP1B4Q9UN42 357 aaPredicted RBP8.99□□□□□ -0.97
USP28-211ENST00000544272 MOXD2PA6NHM9 499 aa8.98□□□□□ -0.97
USP28-211ENST00000544272 PROSER2Q86WR7 435 aaPredicted RBP8.98□□□□□ -0.97
USP28-211ENST00000544272 KCNK17Q96T54 332 aa8.98□□□□□ -0.97
USP28-211ENST00000544272 SMAPO00193 183 aa8.97□□□□□ -0.97
USP28-211ENST00000544272 NUTM1Q86Y26 1132 aa8.97□□□□□ -0.97
USP28-211ENST00000544272 SNRKQ9NRH2 765 aa8.97□□□□□ -0.97
USP28-211ENST00000544272 SLC4A5Q9BY07 1137 aa8.96□□□□□ -0.98
USP28-211ENST00000544272 KIAA1468Q9P260 1216 aa8.96□□□□□ -0.98
USP28-211ENST00000544272 COG6Q9Y2V7 657 aa8.96□□□□□ -0.98
USP28-211ENST00000544272 SOCS7O14512 581 aa8.95□□□□□ -0.98
USP28-211ENST00000544272 LILRB3O75022 631 aa8.95□□□□□ -0.98
USP28-211ENST00000544272 OTUD5Q96G74 571 aa8.95□□□□□ -0.98
USP28-211ENST00000544272 RAD21O60216 631 aa8.94□□□□□ -0.98
USP28-211ENST00000544272 NDUFV2P19404 249 aa8.94□□□□□ -0.98
USP28-211ENST00000544272 KCNH8Q96L42 1107 aa8.94□□□□□ -0.98
USP28-211ENST00000544272 ARID3AQ99856 593 aa8.94□□□□□ -0.98
USP28-211ENST00000544272 KDM4AO75164 1064 aa8.93□□□□□ -0.98
USP28-211ENST00000544272 GCGRP47871 477 aa8.93□□□□□ -0.98
USP28-211ENST00000544272 USP46P62068 366 aa8.93□□□□□ -0.98
USP28-211ENST00000544272 QPCTQ16769 361 aa8.93□□□□□ -0.98
USP28-211ENST00000544272 POTEEQ6S8J3 1075 aa8.93□□□□□ -0.98
USP28-211ENST00000544272 RABGEF1Q9UJ41 708 aa8.93□□□□□ -0.98
USP28-211ENST00000544272 PCDHB15Q9Y5E8 787 aa8.93□□□□□ -0.98
USP28-211ENST00000544272 PSEN2P49810 448 aa8.92□□□□□ -0.98
USP28-211ENST00000544272 PRPF38BQ5VTL8 546 aaKnown RBP8.92□□□□□ -0.98
USP28-211ENST00000544272 RDH13Q8NBN7 331 aa8.92□□□□□ -0.98
USP28-211ENST00000544272 MTMR14Q8NCE2 650 aa8.92□□□□□ -0.98
USP28-211ENST00000544272 ARHGAP33O14559 1287 aa8.91□□□□□ -0.98
USP28-211ENST00000544272 SLC10A3P09131 477 aa8.91□□□□□ -0.98
USP28-211ENST00000544272 CCDC82Q8N4S0 544 aa8.91□□□□□ -0.98
USP28-211ENST00000544272 HOXA2O43364 376 aa8.9□□□□□ -0.98
USP28-211ENST00000544272 RTL5Q5HYW3 569 aaPredicted RBP8.9□□□□□ -0.98
USP28-211ENST00000544272 SWT1Q5T5J6 900 aaKnown RBP8.9□□□□□ -0.98
USP28-211ENST00000544272 CSPP1Q1MSJ5 1256 aa8.89□□□□□ -0.99
USP28-211ENST00000544272 RSPH4AQ5TD94 716 aa8.89□□□□□ -0.99
USP28-211ENST00000544272 ZNF777Q9ULD5 760 aaPredicted RBP8.89□□□□□ -0.99
USP28-211ENST00000544272 DMRTA1Q5VZB9 504 aa8.88□□□□□ -0.99
USP28-211ENST00000544272 HRCP23327 699 aa8.87□□□□□ -0.99
USP28-211ENST00000544272 VARS2Q5ST30 1063 aaKnown RBP8.87□□□□□ -0.99
USP28-211ENST00000544272 CABLES1Q8TDN4 633 aa8.87□□□□□ -0.99
USP28-211ENST00000544272 SEPT9Q9UHD8 586 aaPredicted RBP8.87□□□□□ -0.99
USP28-211ENST00000544272 PCDHGC3Q9UN70 934 aa8.87□□□□□ -0.99
USP28-211ENST00000544272 ERBB3P21860 1342 aa8.86□□□□□ -0.99
USP28-211ENST00000544272 FDX1P10109 184 aa8.86□□□□□ -0.99
USP28-211ENST00000544272 PBX2P40425 430 aa8.86□□□□□ -0.99
USP28-211ENST00000544272 FAM98CQ17RN3 349 aaKnown RBP8.86□□□□□ -0.99
USP28-211ENST00000544272 ZBTB3Q9H5J0 574 aa8.86□□□□□ -0.99
USP28-211ENST00000544272 AP1G2O75843 785 aa8.85□□□□□ -0.99
USP28-211ENST00000544272 USP17L8P0C7I0 530 aa8.85□□□□□ -0.99
USP28-211ENST00000544272 GDPD2Q9HCC8 539 aa8.85□□□□□ -0.99
USP28-211ENST00000544272 PLSCR2Q9NRY7 297 aa8.85□□□□□ -0.99
USP28-211ENST00000544272 VPS9D1Q9Y2B5 631 aa8.85□□□□□ -0.99
USP28-211ENST00000544272 NUTM2BA6NNL0 878 aaPredicted RBP8.84□□□□□ -0.99
USP28-211ENST00000544272 NUTM2EB1AL46 878 aaPredicted RBP8.84□□□□□ -0.99
USP28-211ENST00000544272 NUTM2DQ5VT03 806 aaPredicted RBP8.84□□□□□ -0.99
USP28-211ENST00000544272 NUTM2AQ8IVF1 878 aaPredicted RBP8.84□□□□□ -0.99
USP28-211ENST00000544272 AXIN2Q9Y2T1 843 aa8.84□□□□□ -0.99
USP28-211ENST00000544272 GUCA2AQ02747 115 aa8.83□□□□□ -1
USP28-211ENST00000544272 LAPTM4BQ86VI4 370 aa8.83□□□□□ -1
USP28-211ENST00000544272 HLA-CQ95604 372 aa8.83□□□□□ -1
USP28-211ENST00000544272 GJD4Q96KN9 370 aaPredicted RBP8.83□□□□□ -1
USP28-211ENST00000544272 SERPINA10Q9UK55 444 aa8.83□□□□□ -1
USP28-211ENST00000544272 ZNF330Q9Y3S2 320 aaPredicted RBP8.83□□□□□ -1
USP28-211ENST00000544272 BHMG1C9JSJ3 638 aaPredicted RBP8.82□□□□□ -1
USP28-211ENST00000544272 ST18O60284 1047 aa8.82□□□□□ -1
USP28-211ENST00000544272 SLF2Q8IX21 1173 aa8.82□□□□□ -1
USP28-211ENST00000544272 ZNF687Q8N1G0 1237 aa8.82□□□□□ -1
USP28-211ENST00000544272 HDGFP51858 240 aaKnown RBP8.81□□□□□ -1
USP28-211ENST00000544272 SAMD7Q7Z3H4 446 aa8.81□□□□□ -1
USP28-211ENST00000544272 TBC1D2BQ9UPU7 963 aa8.81□□□□□ -1
USP28-211ENST00000544272 FUT2Q10981 343 aa8.8□□□□□ -1
USP28-211ENST00000544272 MTMR2Q13614 643 aa8.8□□□□□ -1
USP28-211ENST00000544272 PRM3Q9NNZ6 103 aa8.8□□□□□ -1
USP28-211ENST00000544272 TK2O00142 265 aa8.79□□□□□ -1
USP28-211ENST00000544272 SLC4A3P48751 1232 aa8.79□□□□□ -1
USP28-211ENST00000544272 EMP3P54852 163 aa8.79□□□□□ -1
USP28-211ENST00000544272 GRIPAP1Q4V328 841 aa8.79□□□□□ -1
USP28-211ENST00000544272 CCDC97Q96F63 343 aaPredicted RBP8.79□□□□□ -1
USP28-211ENST00000544272 GPR37L1O60883 481 aa8.78□□□□□ -1
USP28-211ENST00000544272 CFHP08603 1231 aa8.78□□□□□ -1
USP28-211ENST00000544272 ABL2P42684 1182 aa8.78□□□□□ -1
USP28-211ENST00000544272 CTDSPL2Q05D32 466 aa8.78□□□□□ -1
USP28-211ENST00000544272 WWC1Q8IX03 1113 aa8.78□□□□□ -1
USP28-211ENST00000544272 TRIM34Q9BYJ4 488 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms