RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 RIMS2Q9UQ26 1411 aa21.04■□□□□ 0.96
TNFRSF1A-216ENST00000543995 NCKAP5LQ9HCH0 1330 aa21.03■□□□□ 0.96
TNFRSF1A-216ENST00000543995 NEURL4Q96JN8 1562 aa21.03■□□□□ 0.96
TNFRSF1A-216ENST00000543995 STRCQ7RTU9 1775 aa21.02■□□□□ 0.96
TNFRSF1A-216ENST00000543995 PPP1R15AO75807 674 aaPredicted RBP21.02■□□□□ 0.96
TNFRSF1A-216ENST00000543995 NUTM2DQ5VT03 806 aaPredicted RBP21.02■□□□□ 0.96
TNFRSF1A-216ENST00000543995 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.01■□□□□ 0.95
TNFRSF1A-216ENST00000543995 SCAF11Q99590 1463 aaKnown RBP21.01■□□□□ 0.95
TNFRSF1A-216ENST00000543995 ZFYVE9O95405 1425 aa21.01■□□□□ 0.95
TNFRSF1A-216ENST00000543995 LTKP29376 864 aa21■□□□□ 0.95
TNFRSF1A-216ENST00000543995 NEXMIFQ5QGS0 1516 aa21■□□□□ 0.95
TNFRSF1A-216ENST00000543995 RPGRIP1LQ68CZ1 1315 aa21■□□□□ 0.95
TNFRSF1A-216ENST00000543995 PPLO60437 1756 aa20.99■□□□□ 0.95
TNFRSF1A-216ENST00000543995 CLSPNQ9HAW4 1339 aa20.98■□□□□ 0.95
TNFRSF1A-216ENST00000543995 BCANQ96GW7 911 aa20.97■□□□□ 0.95
TNFRSF1A-216ENST00000543995 IFT172Q9UG01 1749 aa20.96■□□□□ 0.95
TNFRSF1A-216ENST00000543995 SENP3Q9H4L4 574 aaPredicted RBP20.96■□□□□ 0.95
TNFRSF1A-216ENST00000543995 NPHP4O75161 1426 aaPredicted RBP20.95■□□□□ 0.94
TNFRSF1A-216ENST00000543995 IQGAP1P46940 1657 aa20.94■□□□□ 0.94
TNFRSF1A-216ENST00000543995 VGFO15240 615 aaPredicted RBP20.94■□□□□ 0.94
TNFRSF1A-216ENST00000543995 DCAF11Q8TEB1 546 aa20.94■□□□□ 0.94
TNFRSF1A-216ENST00000543995 DMRT2Q9Y5R5 561 aa20.94■□□□□ 0.94
TNFRSF1A-216ENST00000543995 MED14O60244 1454 aa20.93■□□□□ 0.94
TNFRSF1A-216ENST00000543995 KDM2AQ9Y2K7 1162 aa20.92■□□□□ 0.94
TNFRSF1A-216ENST00000543995 PLEKHG1Q9ULL1 1385 aa20.92■□□□□ 0.94
TNFRSF1A-216ENST00000543995 TONSLQ96HA7 1378 aa20.91■□□□□ 0.94
TNFRSF1A-216ENST00000543995 L3MBTL2Q969R5 705 aa20.88■□□□□ 0.93
TNFRSF1A-216ENST00000543995 MYOM2P54296 1465 aa20.88■□□□□ 0.93
TNFRSF1A-216ENST00000543995 ADGRF5Q8IZF2 1346 aa20.88■□□□□ 0.93
TNFRSF1A-216ENST00000543995 SLC26A8Q96RN1 970 aa20.86■□□□□ 0.93
TNFRSF1A-216ENST00000543995 STAC3Q96MF2 364 aa20.85■□□□□ 0.93
TNFRSF1A-216ENST00000543995 SETBP1Q9Y6X0 1596 aa20.85■□□□□ 0.93
TNFRSF1A-216ENST00000543995 NRXN3Q9Y4C0 1643 aa20.84■□□□□ 0.93
TNFRSF1A-216ENST00000543995 DIP2AQ14689 1571 aa20.82■□□□□ 0.92
TNFRSF1A-216ENST00000543995 PIK3C2GO75747 1445 aa20.82■□□□□ 0.92
TNFRSF1A-216ENST00000543995 NRXN1Q9ULB1 1477 aa20.81■□□□□ 0.92
TNFRSF1A-216ENST00000543995 ADAMTS13Q76LX8 1427 aa20.81■□□□□ 0.92
TNFRSF1A-216ENST00000543995 TBX22Q9Y458 520 aa20.8■□□□□ 0.92
TNFRSF1A-216ENST00000543995 ALKQ9UM73 1620 aa20.79■□□□□ 0.92
TNFRSF1A-216ENST00000543995 TIMELESSQ9UNS1 1208 aa20.78■□□□□ 0.92
TNFRSF1A-216ENST00000543995 LAMC1P11047 1609 aa20.77■□□□□ 0.92
TNFRSF1A-216ENST00000543995 SETD1AO15047 1707 aaKnown RBP20.76■□□□□ 0.91
TNFRSF1A-216ENST00000543995 CFAP70Q5T0N1 1121 aa20.76■□□□□ 0.91
TNFRSF1A-216ENST00000543995 PRAG1Q86YV5 1406 aa20.76■□□□□ 0.91
TNFRSF1A-216ENST00000543995 C14orf93Q9H972 538 aaKnown RBP20.75■□□□□ 0.91
TNFRSF1A-216ENST00000543995 ZNF335Q9H4Z2 1342 aaPredicted RBP20.74■□□□□ 0.91
TNFRSF1A-216ENST00000543995 METP08581 1390 aa20.74■□□□□ 0.91
TNFRSF1A-216ENST00000543995 CHD2O14647 1828 aaKnown RBP20.73■□□□□ 0.91
TNFRSF1A-216ENST00000543995 PIK3R4Q99570 1358 aa20.72■□□□□ 0.91
TNFRSF1A-216ENST00000543995 TMEM132EQ6IEE7 984 aa20.71■□□□□ 0.91
TNFRSF1A-216ENST00000543995 KIAA1210Q9ULL0 1709 aa20.71■□□□□ 0.91
TNFRSF1A-216ENST00000543995 KCNA6P17658 529 aa20.7■□□□□ 0.9
TNFRSF1A-216ENST00000543995 STRCP1A6NGW2 1772 aa20.7■□□□□ 0.9
TNFRSF1A-216ENST00000543995 NBPF8Q3BBV2 869 aa20.69■□□□□ 0.9
TNFRSF1A-216ENST00000543995 AMOTL2Q9Y2J4 779 aa20.68■□□□□ 0.9
TNFRSF1A-216ENST00000543995 TRPM1Q7Z4N2 1603 aa20.68■□□□□ 0.9
TNFRSF1A-216ENST00000543995 NWD1Q149M9 1564 aa20.68■□□□□ 0.9
TNFRSF1A-216ENST00000543995 ASXL1Q8IXJ9 1541 aa20.68■□□□□ 0.9
TNFRSF1A-216ENST00000543995 PTPRUQ92729 1446 aa20.68■□□□□ 0.9
TNFRSF1A-216ENST00000543995 STK26Q9P289 416 aa20.67■□□□□ 0.9
TNFRSF1A-216ENST00000543995 XRN1Q8IZH2 1706 aaKnown RBP20.65■□□□□ 0.9
TNFRSF1A-216ENST00000543995 CPS1P31327 1500 aa20.65■□□□□ 0.9
TNFRSF1A-216ENST00000543995 ADGRB1O14514 1584 aa20.64■□□□□ 0.9
TNFRSF1A-216ENST00000543995 NBPF1Q3BBV0 1214 aa20.64■□□□□ 0.9
TNFRSF1A-216ENST00000543995 YTHDC2Q9H6S0 1430 aaKnown RBP20.64■□□□□ 0.89
TNFRSF1A-216ENST00000543995 ROCK2O75116 1388 aaKnown RBP20.64■□□□□ 0.89
TNFRSF1A-216ENST00000543995 LTBP4Q8N2S1 1624 aa20.64■□□□□ 0.89
TNFRSF1A-216ENST00000543995 NKTRP30414 1462 aaKnown RBP20.63■□□□□ 0.89
TNFRSF1A-216ENST00000543995 LRPPRCP42704 1394 aaKnown RBP20.63■□□□□ 0.89
TNFRSF1A-216ENST00000543995 PROSER2Q86WR7 435 aaPredicted RBP20.62■□□□□ 0.89
TNFRSF1A-216ENST00000543995 KNDC1Q76NI1 1749 aa20.62■□□□□ 0.89
TNFRSF1A-216ENST00000543995 RALGAPBQ86X10 1494 aa20.61■□□□□ 0.89
TNFRSF1A-216ENST00000543995 TRAK1Q9UPV9 953 aa20.59■□□□□ 0.89
TNFRSF1A-216ENST00000543995 ABCC11Q96J66 1382 aa20.59■□□□□ 0.89
TNFRSF1A-216ENST00000543995 RBM33Q96EV2 1170 aaKnown RBP20.58■□□□□ 0.89
TNFRSF1A-216ENST00000543995 PTCH1Q13635 1447 aa20.58■□□□□ 0.88
TNFRSF1A-216ENST00000543995 LRRC7Q96NW7 1537 aa20.58■□□□□ 0.88
TNFRSF1A-216ENST00000543995 TECPR2O15040 1411 aa20.57■□□□□ 0.88
TNFRSF1A-216ENST00000543995 ROBO2Q9HCK4 1378 aa20.57■□□□□ 0.88
TNFRSF1A-216ENST00000543995 CARD11Q9BXL7 1154 aa20.57■□□□□ 0.88
TNFRSF1A-216ENST00000543995 TMEM94Q12767 1356 aa20.56■□□□□ 0.88
TNFRSF1A-216ENST00000543995 C14orf37Q86TY3 774 aa20.56■□□□□ 0.88
TNFRSF1A-216ENST00000543995 XIRP1Q702N8 1843 aaKnown RBP20.55■□□□□ 0.88
TNFRSF1A-216ENST00000543995 GPRASP1Q5JY77 1395 aa20.54■□□□□ 0.88
TNFRSF1A-216ENST00000543995 DLC1Q96QB1 1528 aa20.54■□□□□ 0.88
TNFRSF1A-216ENST00000543995 WAPLQ7Z5K2 1190 aa20.54■□□□□ 0.88
TNFRSF1A-216ENST00000543995 ARHGEF28Q8N1W1 1705 aaKnown RBP20.54■□□□□ 0.88
TNFRSF1A-216ENST00000543995 POGKQ9P215 609 aa20.53■□□□□ 0.88
TNFRSF1A-216ENST00000543995 FAM135BQ49AJ0 1406 aa20.53■□□□□ 0.88
TNFRSF1A-216ENST00000543995 CERKQ8TCT0 537 aa20.53■□□□□ 0.88
TNFRSF1A-216ENST00000543995 PRAM1Q96QH2 718 aa20.53■□□□□ 0.88
TNFRSF1A-216ENST00000543995 SAFB2Q14151 953 aaKnown RBP eCLIP20.52■□□□□ 0.87
TNFRSF1A-216ENST00000543995 SIRT1Q96EB6 747 aa20.52■□□□□ 0.87
TNFRSF1A-216ENST00000543995 PLEKHH1Q9ULM0 1364 aa20.51■□□□□ 0.87
TNFRSF1A-216ENST00000543995 NCOA3Q9Y6Q9 1424 aa20.5■□□□□ 0.87
TNFRSF1A-216ENST00000543995 EIF3AQ14152 1382 aaKnown RBP20.49■□□□□ 0.87
TNFRSF1A-216ENST00000543995 ZEB1P37275 1124 aaPredicted RBP20.48■□□□□ 0.87
TNFRSF1A-216ENST00000543995 MSH6P52701 1360 aa20.48■□□□□ 0.87
TNFRSF1A-216ENST00000543995 NALCNQ8IZF0 1738 aa20.48■□□□□ 0.87
TNFRSF1A-216ENST00000543995 IQSEC2Q5JU85 1478 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms