RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	RIMS2	Q9UQ26	1411 aa		14.61	□□□□□ -0.07
CPSF7-221	ENST00000543545	MYO3A	Q8NEV4	1616 aa		14.6	□□□□□ -0.07
CPSF7-221	ENST00000543545	LTK	P29376	864 aa		14.6	□□□□□ -0.07
CPSF7-221	ENST00000543545	LMTK3	Q96Q04	1460 aa		14.6	□□□□□ -0.07
CPSF7-221	ENST00000543545	ADGRB3	O60242	1522 aa		14.6	□□□□□ -0.07
CPSF7-221	ENST00000543545	PIK3C2B	O00750	1634 aa		14.59	□□□□□ -0.07
CPSF7-221	ENST00000543545	TIMELESS	Q9UNS1	1208 aa		14.58	□□□□□ -0.08
CPSF7-221	ENST00000543545	STAC3	Q96MF2	364 aa		14.57	□□□□□ -0.08
CPSF7-221	ENST00000543545	ADGRF5	Q8IZF2	1346 aa		14.56	□□□□□ -0.08
CPSF7-221	ENST00000543545	TMEM131L	A2VDJ0	1609 aa		14.55	□□□□□ -0.08
CPSF7-221	ENST00000543545	DMRT2	Q9Y5R5	561 aa		14.54	□□□□□ -0.08
CPSF7-221	ENST00000543545	SCAF11	Q99590	1463 aa	Known RBP	14.54	□□□□□ -0.08
CPSF7-221	ENST00000543545	ARHGAP23	Q9P227	1491 aa		14.53	□□□□□ -0.08
CPSF7-221	ENST00000543545	ZFYVE9	O95405	1425 aa		14.53	□□□□□ -0.08
CPSF7-221	ENST00000543545	SLC26A8	Q96RN1	970 aa		14.53	□□□□□ -0.08
CPSF7-221	ENST00000543545	SLIT1	O75093	1534 aa		14.52	□□□□□ -0.08
CPSF7-221	ENST00000543545	UBR1	Q8IWV7	1749 aa		14.52	□□□□□ -0.09
CPSF7-221	ENST00000543545	NPHP4	O75161	1426 aa	Predicted RBP	14.51	□□□□□ -0.09
CPSF7-221	ENST00000543545	PLEKHG1	Q9ULL1	1385 aa		14.51	□□□□□ -0.09
CPSF7-221	ENST00000543545	KIF1B	O60333	1816 aa		14.51	□□□□□ -0.09
CPSF7-221	ENST00000543545	ZNF142	P52746	1687 aa	Predicted RBP	14.51	□□□□□ -0.09
CPSF7-221	ENST00000543545	CFAP70	Q5T0N1	1121 aa		14.5	□□□□□ -0.09
CPSF7-221	ENST00000543545	NEURL4	Q96JN8	1562 aa		14.5	□□□□□ -0.09
CPSF7-221	ENST00000543545	NEXMIF	Q5QGS0	1516 aa		14.49	□□□□□ -0.09
CPSF7-221	ENST00000543545	ZEB1	P37275	1124 aa	Predicted RBP	14.48	□□□□□ -0.09
CPSF7-221	ENST00000543545	NBPF8	Q3BBV2	869 aa		14.48	□□□□□ -0.09
CPSF7-221	ENST00000543545	C14orf93	Q9H972	538 aa	Known RBP	14.48	□□□□□ -0.09
CPSF7-221	ENST00000543545	TBX22	Q9Y458	520 aa		14.48	□□□□□ -0.09
CPSF7-221	ENST00000543545	KDM5A	P29375	1690 aa	Known RBP	14.48	□□□□□ -0.09
CPSF7-221	ENST00000543545	MYOM2	P54296	1465 aa		14.46	□□□□□ -0.09
CPSF7-221	ENST00000543545	TMEM132E	Q6IEE7	984 aa		14.46	□□□□□ -0.09
CPSF7-221	ENST00000543545	STK26	Q9P289	416 aa		14.45	□□□□□ -0.1
CPSF7-221	ENST00000543545	PIK3C2G	O75747	1445 aa		14.44	□□□□□ -0.1
CPSF7-221	ENST00000543545	PRAG1	Q86YV5	1406 aa		14.44	□□□□□ -0.1
CPSF7-221	ENST00000543545	NBPF1	Q3BBV0	1214 aa		14.44	□□□□□ -0.1
CPSF7-221	ENST00000543545	MED14	O60244	1454 aa		14.44	□□□□□ -0.1
CPSF7-221	ENST00000543545	MYO5B	Q9ULV0	1848 aa		14.43	□□□□□ -0.1
CPSF7-221	ENST00000543545	ADAMTS13	Q76LX8	1427 aa		14.42	□□□□□ -0.1
CPSF7-221	ENST00000543545	AMOTL2	Q9Y2J4	779 aa		14.42	□□□□□ -0.1
CPSF7-221	ENST00000543545	NRXN1	Q9ULB1	1477 aa		14.42	□□□□□ -0.1
CPSF7-221	ENST00000543545	CARD11	Q9BXL7	1154 aa		14.41	□□□□□ -0.1
CPSF7-221	ENST00000543545	ROCK2	O75116	1388 aa	Known RBP	14.41	□□□□□ -0.1
CPSF7-221	ENST00000543545	MET	P08581	1390 aa		14.41	□□□□□ -0.1
CPSF7-221	ENST00000543545	KCNA6	P17658	529 aa		14.4	□□□□□ -0.1
CPSF7-221	ENST00000543545	TRAK1	Q9UPV9	953 aa		14.4	□□□□□ -0.1
CPSF7-221	ENST00000543545	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	14.39	□□□□□ -0.11
CPSF7-221	ENST00000543545	PPL	O60437	1756 aa		14.38	□□□□□ -0.11
CPSF7-221	ENST00000543545	ALK	Q9UM73	1620 aa		14.37	□□□□□ -0.11
CPSF7-221	ENST00000543545	PROSER2	Q86WR7	435 aa	Predicted RBP	14.37	□□□□□ -0.11
CPSF7-221	ENST00000543545	SETBP1	Q9Y6X0	1596 aa		14.37	□□□□□ -0.11
CPSF7-221	ENST00000543545	PIK3R4	Q99570	1358 aa		14.36	□□□□□ -0.11
CPSF7-221	ENST00000543545	POGK	Q9P215	609 aa		14.36	□□□□□ -0.11
CPSF7-221	ENST00000543545	LRPPRC	P42704	1394 aa	Known RBP	14.35	□□□□□ -0.11
CPSF7-221	ENST00000543545	C14orf37	Q86TY3	774 aa		14.35	□□□□□ -0.11
CPSF7-221	ENST00000543545	IQGAP1	P46940	1657 aa		14.35	□□□□□ -0.11
CPSF7-221	ENST00000543545	STRC	Q7RTU9	1775 aa		14.34	□□□□□ -0.11
CPSF7-221	ENST00000543545	YTHDC2	Q9H6S0	1430 aa	Known RBP	14.34	□□□□□ -0.11
CPSF7-221	ENST00000543545	SAFB2	Q14151	953 aa	Known RBP eCLIP	14.34	□□□□□ -0.11
CPSF7-221	ENST00000543545	RBM33	Q96EV2	1170 aa	Known RBP	14.34	□□□□□ -0.11
CPSF7-221	ENST00000543545	ABCC11	Q96J66	1382 aa		14.34	□□□□□ -0.11
CPSF7-221	ENST00000543545	PTPRU	Q92729	1446 aa		14.33	□□□□□ -0.11
CPSF7-221	ENST00000543545	IFT172	Q9UG01	1749 aa		14.33	□□□□□ -0.12
CPSF7-221	ENST00000543545	WAPL	Q7Z5K2	1190 aa		14.33	□□□□□ -0.12
CPSF7-221	ENST00000543545	PRAM1	Q96QH2	718 aa		14.33	□□□□□ -0.12
CPSF7-221	ENST00000543545	POLR1A	O95602	1720 aa	Predicted RBP	14.32	□□□□□ -0.12
CPSF7-221	ENST00000543545	RALGAPB	Q86X10	1494 aa		14.32	□□□□□ -0.12
CPSF7-221	ENST00000543545	DIP2A	Q14689	1571 aa		14.32	□□□□□ -0.12
CPSF7-221	ENST00000543545	NRXN3	Q9Y4C0	1643 aa		14.31	□□□□□ -0.12
CPSF7-221	ENST00000543545	SIRT1	Q96EB6	747 aa		14.31	□□□□□ -0.12
CPSF7-221	ENST00000543545	GPRASP1	Q5JY77	1395 aa		14.31	□□□□□ -0.12
CPSF7-221	ENST00000543545	EIF4G2	P78344	907 aa	Known RBP eCLIP	14.3	□□□□□ -0.12
CPSF7-221	ENST00000543545	ROBO2	Q9HCK4	1378 aa		14.3	□□□□□ -0.12
CPSF7-221	ENST00000543545	EIF3A	Q14152	1382 aa	Known RBP	14.29	□□□□□ -0.12
CPSF7-221	ENST00000543545	ADGRB1	O14514	1584 aa		14.29	□□□□□ -0.12
CPSF7-221	ENST00000543545	ST20-MTHFS	A0A0A6YYL1	179 aa		14.28	□□□□□ -0.12
CPSF7-221	ENST00000543545	CENPJ	Q9HC77	1338 aa	Predicted RBP	14.28	□□□□□ -0.12
CPSF7-221	ENST00000543545	ASXL1	Q8IXJ9	1541 aa		14.27	□□□□□ -0.12
CPSF7-221	ENST00000543545	TMEM94	Q12767	1356 aa		14.27	□□□□□ -0.12
CPSF7-221	ENST00000543545	USP47	Q96K76	1375 aa		14.27	□□□□□ -0.12
CPSF7-221	ENST00000543545	PLEKHH1	Q9ULM0	1364 aa		14.27	□□□□□ -0.12
CPSF7-221	ENST00000543545	MINK1	Q8N4C8	1332 aa	Predicted RBP	14.27	□□□□□ -0.12
CPSF7-221	ENST00000543545	LAMC1	P11047	1609 aa		14.26	□□□□□ -0.13
CPSF7-221	ENST00000543545	HSPA5	P11021	654 aa	Known RBP	14.26	□□□□□ -0.13
CPSF7-221	ENST00000543545	HIRIP3	Q9BW71	556 aa	Predicted RBP	14.26	□□□□□ -0.13
CPSF7-221	ENST00000543545	TECPR2	O15040	1411 aa		14.25	□□□□□ -0.13
CPSF7-221	ENST00000543545	PTCH1	Q13635	1447 aa		14.24	□□□□□ -0.13
CPSF7-221	ENST00000543545	FAM135B	Q49AJ0	1406 aa		14.24	□□□□□ -0.13
CPSF7-221	ENST00000543545	TRPM1	Q7Z4N2	1603 aa		14.24	□□□□□ -0.13
CPSF7-221	ENST00000543545	C19orf44	Q9H6X5	657 aa		14.24	□□□□□ -0.13
CPSF7-221	ENST00000543545	KIAA1210	Q9ULL0	1709 aa		14.24	□□□□□ -0.13
CPSF7-221	ENST00000543545	ATF3	P18847	181 aa		14.23	□□□□□ -0.13
CPSF7-221	ENST00000543545	NKTR	P30414	1462 aa	Known RBP	14.23	□□□□□ -0.13
CPSF7-221	ENST00000543545	CPS1	P31327	1500 aa		14.22	□□□□□ -0.13
CPSF7-221	ENST00000543545	SLC24A1	O60721	1099 aa		14.22	□□□□□ -0.13
CPSF7-221	ENST00000543545	CERK	Q8TCT0	537 aa		14.22	□□□□□ -0.13
CPSF7-221	ENST00000543545	LRRC7	Q96NW7	1537 aa		14.21	□□□□□ -0.13
CPSF7-221	ENST00000543545	DLC1	Q96QB1	1528 aa		14.21	□□□□□ -0.13
CPSF7-221	ENST00000543545	MSH6	P52701	1360 aa		14.21	□□□□□ -0.14
CPSF7-221	ENST00000543545	NUTM2F	A1L443	756 aa		14.2	□□□□□ -0.14
CPSF7-221	ENST00000543545	SRPK2	P78362	688 aa	Known RBP	14.2	□□□□□ -0.14

Retrieved 100 of 20,778 RNA–protein pairs in 44 ms