RNA–Protein interactions for RNA: ENST00000542541.6

HOMER3-205, Transcript of homer scaffold protein 3, human

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,607 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HOMER3-205	ENST00000542541	MYO5B	Q9ULV0	1848 aa		33.28	■■■□□ 2.92
HOMER3-205	ENST00000542541	DCAF11	Q8TEB1	546 aa		33.28	■■■□□ 2.92
HOMER3-205	ENST00000542541	EID1	Q9Y6B2	187 aa		33.27	■■■□□ 2.92
HOMER3-205	ENST00000542541	VGF	O15240	615 aa	Predicted RBP	33.26	■■■□□ 2.91
HOMER3-205	ENST00000542541	RIMS2	Q9UQ26	1411 aa		33.25	■■■□□ 2.91
HOMER3-205	ENST00000542541	SLIT1	O75093	1534 aa		33.24	■■■□□ 2.91
HOMER3-205	ENST00000542541	HSPA2	P54652	639 aa		33.23	■■■□□ 2.91
HOMER3-205	ENST00000542541	ARHGAP23	Q9P227	1491 aa		33.23	■■■□□ 2.91
HOMER3-205	ENST00000542541	TXNDC2	Q86VQ3	553 aa		33.22	■■■□□ 2.91
HOMER3-205	ENST00000542541	ANKLE2	Q86XL3	938 aa		33.22	■■■□□ 2.91
HOMER3-205	ENST00000542541	KDM2A	Q9Y2K7	1162 aa		33.22	■■■□□ 2.91
HOMER3-205	ENST00000542541	PPP1R15A	O75807	674 aa	Predicted RBP	33.21	■■■□□ 2.91
HOMER3-205	ENST00000542541	ZFYVE9	O95405	1425 aa		33.21	■■■□□ 2.91
HOMER3-205	ENST00000542541	NEXMIF	Q5QGS0	1516 aa		33.19	■■■□□ 2.9
HOMER3-205	ENST00000542541	STRC	Q7RTU9	1775 aa		33.19	■■■□□ 2.9
HOMER3-205	ENST00000542541	NUTM2D	Q5VT03	806 aa	Predicted RBP	33.18	■■■□□ 2.9
HOMER3-205	ENST00000542541	LTK	P29376	864 aa		33.16	■■■□□ 2.9
HOMER3-205	ENST00000542541	ZEB1	P37275	1124 aa	Predicted RBP	33.15	■■■□□ 2.9
HOMER3-205	ENST00000542541	MYOM2	P54296	1465 aa		33.14	■■■□□ 2.9
HOMER3-205	ENST00000542541	SCAF11	Q99590	1463 aa	Known RBP	33.13	■■■□□ 2.89
HOMER3-205	ENST00000542541	PPL	O60437	1756 aa		33.13	■■■□□ 2.89
HOMER3-205	ENST00000542541	ADGRF5	Q8IZF2	1346 aa		33.11	■■■□□ 2.89
HOMER3-205	ENST00000542541	POLR1A	O95602	1720 aa	Predicted RBP	33.11	■■■□□ 2.89
HOMER3-205	ENST00000542541	IFT172	Q9UG01	1749 aa		33.1	■■■□□ 2.89
HOMER3-205	ENST00000542541	PLEKHG1	Q9ULL1	1385 aa		33.07	■■■□□ 2.89
HOMER3-205	ENST00000542541	BCAN	Q96GW7	911 aa		33.07	■■■□□ 2.88
HOMER3-205	ENST00000542541	NCKAP5L	Q9HCH0	1330 aa		33.06	■■■□□ 2.88
HOMER3-205	ENST00000542541	NRXN1	Q9ULB1	1477 aa		33.05	■■■□□ 2.88
HOMER3-205	ENST00000542541	PRAG1	Q86YV5	1406 aa		33.03	■■■□□ 2.88
HOMER3-205	ENST00000542541	PIK3C2G	O75747	1445 aa		33.02	■■■□□ 2.88
HOMER3-205	ENST00000542541	MED14	O60244	1454 aa		33	■■■□□ 2.87
HOMER3-205	ENST00000542541	NPHP4	O75161	1426 aa	Predicted RBP	33	■■■□□ 2.87
HOMER3-205	ENST00000542541	NBPF8	Q3BBV2	869 aa		32.98	■■■□□ 2.87
HOMER3-205	ENST00000542541	SENP3	Q9H4L4	574 aa	Predicted RBP	32.98	■■■□□ 2.87
HOMER3-205	ENST00000542541	C14orf93	Q9H972	538 aa	Known RBP	32.97	■■■□□ 2.87
HOMER3-205	ENST00000542541	SETBP1	Q9Y6X0	1596 aa		32.95	■■■□□ 2.87
HOMER3-205	ENST00000542541	DMRT2	Q9Y5R5	561 aa		32.95	■■■□□ 2.86
HOMER3-205	ENST00000542541	CFAP70	Q5T0N1	1121 aa		32.94	■■■□□ 2.86
HOMER3-205	ENST00000542541	TBX22	Q9Y458	520 aa		32.93	■■■□□ 2.86
HOMER3-205	ENST00000542541	SLC26A8	Q96RN1	970 aa		32.91	■■■□□ 2.86
HOMER3-205	ENST00000542541	IQGAP1	P46940	1657 aa		32.91	■■■□□ 2.86
HOMER3-205	ENST00000542541	ADAMTS13	Q76LX8	1427 aa		32.9	■■■□□ 2.86
HOMER3-205	ENST00000542541	ALK	Q9UM73	1620 aa		32.88	■■■□□ 2.85
HOMER3-205	ENST00000542541	LAMC1	P11047	1609 aa		32.86	■■■□□ 2.85
HOMER3-205	ENST00000542541	DIP2A	Q14689	1571 aa		32.86	■■■□□ 2.85
HOMER3-205	ENST00000542541	NRXN3	Q9Y4C0	1643 aa		32.86	■■■□□ 2.85
HOMER3-205	ENST00000542541	ROCK2	O75116	1388 aa	Known RBP	32.84	■■■□□ 2.85
HOMER3-205	ENST00000542541	KIAA1210	Q9ULL0	1709 aa		32.84	■■■□□ 2.85
HOMER3-205	ENST00000542541	NBPF1	Q3BBV0	1214 aa		32.83	■■■□□ 2.85
HOMER3-205	ENST00000542541	RALGAPB	Q86X10	1494 aa		32.83	■■■□□ 2.85
HOMER3-205	ENST00000542541	PIK3R4	Q99570	1358 aa		32.81	■■■□□ 2.84
HOMER3-205	ENST00000542541	TMEM132E	Q6IEE7	984 aa		32.8	■■■□□ 2.84
HOMER3-205	ENST00000542541	TRPM1	Q7Z4N2	1603 aa		32.8	■■■□□ 2.84
HOMER3-205	ENST00000542541	MET	P08581	1390 aa		32.79	■■■□□ 2.84
HOMER3-205	ENST00000542541	CARD11	Q9BXL7	1154 aa		32.77	■■■□□ 2.84
HOMER3-205	ENST00000542541	GPRASP1	Q5JY77	1395 aa		32.77	■■■□□ 2.84
HOMER3-205	ENST00000542541	ADGRB1	O14514	1584 aa		32.74	■■■□□ 2.83
HOMER3-205	ENST00000542541	SETD1A	O15047	1707 aa	Known RBP	32.73	■■■□□ 2.83
HOMER3-205	ENST00000542541	LRPPRC	P42704	1394 aa	Known RBP	32.71	■■■□□ 2.83
HOMER3-205	ENST00000542541	YTHDC2	Q9H6S0	1430 aa	Known RBP	32.71	■■■□□ 2.83
HOMER3-205	ENST00000542541	STK26	Q9P289	416 aa		32.7	■■■□□ 2.83
HOMER3-205	ENST00000542541	AMOTL2	Q9Y2J4	779 aa		32.7	■■■□□ 2.83
HOMER3-205	ENST00000542541	KCNA6	P17658	529 aa		32.69	■■■□□ 2.82
HOMER3-205	ENST00000542541	ASXL1	Q8IXJ9	1541 aa		32.69	■■■□□ 2.82
HOMER3-205	ENST00000542541	ABCC11	Q96J66	1382 aa		32.68	■■■□□ 2.82
HOMER3-205	ENST00000542541	STRCP1	A6NGW2	1772 aa		32.67	■■■□□ 2.82
HOMER3-205	ENST00000542541	TRAK1	Q9UPV9	953 aa		32.66	■■■□□ 2.82
HOMER3-205	ENST00000542541	PTPRU	Q92729	1446 aa		32.65	■■■□□ 2.82
HOMER3-205	ENST00000542541	SIRT1	Q96EB6	747 aa		32.62	■■■□□ 2.81
HOMER3-205	ENST00000542541	TECPR2	O15040	1411 aa		32.61	■■■□□ 2.81
HOMER3-205	ENST00000542541	EIF3A	Q14152	1382 aa	Known RBP	32.61	■■■□□ 2.81
HOMER3-205	ENST00000542541	CHD2	O14647	1828 aa	Known RBP	32.59	■■■□□ 2.81
HOMER3-205	ENST00000542541	LTBP4	Q8N2S1	1624 aa		32.59	■■■□□ 2.81
HOMER3-205	ENST00000542541	EIF4G2	P78344	907 aa	Known RBP eCLIP	32.59	■■■□□ 2.81
HOMER3-205	ENST00000542541	USP47	Q96K76	1375 aa		32.57	■■■□□ 2.8
HOMER3-205	ENST00000542541	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	32.57	■■■□□ 2.8
HOMER3-205	ENST00000542541	DLC1	Q96QB1	1528 aa		32.56	■■■□□ 2.8
HOMER3-205	ENST00000542541	POGK	Q9P215	609 aa		32.56	■■■□□ 2.8
HOMER3-205	ENST00000542541	NWD1	Q149M9	1564 aa		32.56	■■■□□ 2.8
HOMER3-205	ENST00000542541	PTCH1	Q13635	1447 aa		32.55	■■■□□ 2.8
HOMER3-205	ENST00000542541	FAM135B	Q49AJ0	1406 aa		32.55	■■■□□ 2.8
HOMER3-205	ENST00000542541	XRN1	Q8IZH2	1706 aa	Known RBP	32.55	■■■□□ 2.8
HOMER3-205	ENST00000542541	PRAM1	Q96QH2	718 aa		32.54	■■■□□ 2.8
HOMER3-205	ENST00000542541	ROBO2	Q9HCK4	1378 aa		32.54	■■■□□ 2.8
HOMER3-205	ENST00000542541	NKTR	P30414	1462 aa	Known RBP	32.53	■■■□□ 2.8
HOMER3-205	ENST00000542541	CPS1	P31327	1500 aa		32.52	■■■□□ 2.8
HOMER3-205	ENST00000542541	KNDC1	Q76NI1	1749 aa		32.52	■■■□□ 2.8
HOMER3-205	ENST00000542541	PROSER2	Q86WR7	435 aa	Predicted RBP	32.51	■■■□□ 2.8
HOMER3-205	ENST00000542541	CENPJ	Q9HC77	1338 aa	Predicted RBP	32.51	■■■□□ 2.79
HOMER3-205	ENST00000542541	WAPL	Q7Z5K2	1190 aa		32.5	■■■□□ 2.79
HOMER3-205	ENST00000542541	ST20-MTHFS	A0A0A6YYL1	179 aa		32.48	■■■□□ 2.79
HOMER3-205	ENST00000542541	HSPA5	P11021	654 aa	Known RBP	32.48	■■■□□ 2.79
HOMER3-205	ENST00000542541	SLC24A1	O60721	1099 aa		32.46	■■■□□ 2.79
HOMER3-205	ENST00000542541	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.45	■■■□□ 2.79
HOMER3-205	ENST00000542541	ARHGEF28	Q8N1W1	1705 aa	Known RBP	32.45	■■■□□ 2.78
HOMER3-205	ENST00000542541	XIRP1	Q702N8	1843 aa	Known RBP	32.44	■■■□□ 2.78
HOMER3-205	ENST00000542541	PLEKHH1	Q9ULM0	1364 aa		32.43	■■■□□ 2.78
HOMER3-205	ENST00000542541	NCOA3	Q9Y6Q9	1424 aa		32.41	■■■□□ 2.78
HOMER3-205	ENST00000542541	TMEM94	Q12767	1356 aa		32.4	■■■□□ 2.78
HOMER3-205	ENST00000542541	C14orf37	Q86TY3	774 aa		32.4	■■■□□ 2.78

Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms