RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 CHD2O14647 1828 aaKnown RBP13.44□□□□□ -0.26
CLSTN3-212ENST00000541770 SLAIN2Q9P270 581 aa13.44□□□□□ -0.26
CLSTN3-212ENST00000541770 JCADQ9P266 1359 aa13.44□□□□□ -0.26
CLSTN3-212ENST00000541770 GCC2Q8IWJ2 1684 aa13.44□□□□□ -0.26
CLSTN3-212ENST00000541770 PPP1R15AO75807 674 aaPredicted RBP13.43□□□□□ -0.26
CLSTN3-212ENST00000541770 MEX3CQ5U5Q3 659 aaKnown RBP13.43□□□□□ -0.26
CLSTN3-212ENST00000541770 C14orf37Q86TY3 774 aa13.43□□□□□ -0.26
CLSTN3-212ENST00000541770 LMTK2Q8IWU2 1503 aa13.42□□□□□ -0.26
CLSTN3-212ENST00000541770 ANKRD30AQ9BXX3 1397 aa13.42□□□□□ -0.26
CLSTN3-212ENST00000541770 TRIM52Q96A61 297 aa13.41□□□□□ -0.26
CLSTN3-212ENST00000541770 COL16A1Q07092 1604 aaPredicted RBP13.41□□□□□ -0.26
CLSTN3-212ENST00000541770 CHGAP10645 457 aaKnown RBP13.4□□□□□ -0.26
CLSTN3-212ENST00000541770 NOS1P29475 1434 aa13.39□□□□□ -0.27
CLSTN3-212ENST00000541770 SLC52A1Q9NWF4 448 aa13.39□□□□□ -0.27
CLSTN3-212ENST00000541770 FGD6Q6ZV73 1430 aa13.38□□□□□ -0.27
CLSTN3-212ENST00000541770 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.37□□□□□ -0.27
CLSTN3-212ENST00000541770 HDGFP51858 240 aaKnown RBP13.37□□□□□ -0.27
CLSTN3-212ENST00000541770 NUTM2DQ5VT03 806 aaPredicted RBP13.37□□□□□ -0.27
CLSTN3-212ENST00000541770 LRP6O75581 1613 aa13.37□□□□□ -0.27
CLSTN3-212ENST00000541770 RIMS2Q9UQ26 1411 aa13.37□□□□□ -0.27
CLSTN3-212ENST00000541770 PLEKHG1Q9ULL1 1385 aa13.36□□□□□ -0.27
CLSTN3-212ENST00000541770 ZNF772Q68DY9 489 aaPredicted RBP13.36□□□□□ -0.27
CLSTN3-212ENST00000541770 SPATA31A6Q5VVP1 1343 aa13.36□□□□□ -0.27
CLSTN3-212ENST00000541770 TMEM131LA2VDJ0 1609 aa13.35□□□□□ -0.27
CLSTN3-212ENST00000541770 SHPRHQ149N8 1683 aa13.35□□□□□ -0.27
CLSTN3-212ENST00000541770 NUTM2BA6NNL0 878 aaPredicted RBP13.35□□□□□ -0.27
CLSTN3-212ENST00000541770 NUTM2EB1AL46 878 aaPredicted RBP13.35□□□□□ -0.27
CLSTN3-212ENST00000541770 ATF3P18847 181 aa13.35□□□□□ -0.27
CLSTN3-212ENST00000541770 NUTM2AQ8IVF1 878 aaPredicted RBP13.35□□□□□ -0.27
CLSTN3-212ENST00000541770 UPF1Q92900 1129 aaKnown RBP eCLIP13.35□□□□□ -0.27
CLSTN3-212ENST00000541770 ZFYVE9O95405 1425 aa13.35□□□□□ -0.27
CLSTN3-212ENST00000541770 FAM50AQ14320 339 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-212ENST00000541770 CADPS2Q86UW7 1296 aa13.33□□□□□ -0.28
CLSTN3-212ENST00000541770 RPRD2Q5VT52 1461 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-212ENST00000541770 AHDC1Q5TGY3 1603 aaPredicted RBP13.32□□□□□ -0.28
CLSTN3-212ENST00000541770 TBX22Q9Y458 520 aa13.32□□□□□ -0.28
CLSTN3-212ENST00000541770 RXRBP28702 533 aa13.31□□□□□ -0.28
CLSTN3-212ENST00000541770 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.31□□□□□ -0.28
CLSTN3-212ENST00000541770 ANKRD50Q9ULJ7 1429 aa13.3□□□□□ -0.28
CLSTN3-212ENST00000541770 ADGRL2O95490 1459 aa13.3□□□□□ -0.28
CLSTN3-212ENST00000541770 C19orf44Q9H6X5 657 aa13.3□□□□□ -0.28
CLSTN3-212ENST00000541770 E9PCH4 1651 aa13.3□□□□□ -0.28
CLSTN3-212ENST00000541770 NCOA3Q9Y6Q9 1424 aa13.3□□□□□ -0.28
CLSTN3-212ENST00000541770 DIP2AQ14689 1571 aa13.29□□□□□ -0.28
CLSTN3-212ENST00000541770 ADAMTS13Q76LX8 1427 aa13.28□□□□□ -0.28
CLSTN3-212ENST00000541770 TRPM2O94759 1503 aa13.28□□□□□ -0.28
CLSTN3-212ENST00000541770 BRINP3Q76B58 766 aa13.27□□□□□ -0.29
CLSTN3-212ENST00000541770 PPARGC1BQ86YN6 1023 aaKnown RBP13.27□□□□□ -0.29
CLSTN3-212ENST00000541770 AMOTL2Q9Y2J4 779 aa13.27□□□□□ -0.29
CLSTN3-212ENST00000541770 AFF2P51816 1311 aa13.27□□□□□ -0.29
CLSTN3-212ENST00000541770 UNC13BO14795 1591 aa13.26□□□□□ -0.29
CLSTN3-212ENST00000541770 PIK3R4Q99570 1358 aa13.25□□□□□ -0.29
CLSTN3-212ENST00000541770 NHSL1Q5SYE7 1610 aa13.24□□□□□ -0.29
CLSTN3-212ENST00000541770 ASXL1Q8IXJ9 1541 aa13.24□□□□□ -0.29
CLSTN3-212ENST00000541770 C8orf37Q96NL8 207 aa13.24□□□□□ -0.29
CLSTN3-212ENST00000541770 PTPRUQ92729 1446 aa13.23□□□□□ -0.29
CLSTN3-212ENST00000541770 CDK12Q9NYV4 1490 aaPredicted RBP13.23□□□□□ -0.29
CLSTN3-212ENST00000541770 IQGAP3Q86VI3 1631 aa13.22□□□□□ -0.29
CLSTN3-212ENST00000541770 ZNF326Q5BKZ1 582 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-212ENST00000541770 DDX17Q92841 729 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-212ENST00000541770 LRRC59Q96AG4 307 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-212ENST00000541770 QTRT2Q9H974 415 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-212ENST00000541770 XRN1Q8IZH2 1706 aaKnown RBP13.21□□□□□ -0.3
CLSTN3-212ENST00000541770 RRBP1Q9P2E9 1410 aaKnown RBP13.21□□□□□ -0.3
CLSTN3-212ENST00000541770 RGS12O14924 1447 aa13.2□□□□□ -0.3
CLSTN3-212ENST00000541770 DCCP43146 1447 aa13.2□□□□□ -0.3
CLSTN3-212ENST00000541770 MST1RQ04912 1400 aa13.2□□□□□ -0.3
CLSTN3-212ENST00000541770 SETD5Q9C0A6 1442 aa13.2□□□□□ -0.3
CLSTN3-212ENST00000541770 NRXN3Q9Y4C0 1643 aa13.2□□□□□ -0.3
CLSTN3-212ENST00000541770 ADAMTS2O95450 1211 aa13.19□□□□□ -0.3
CLSTN3-212ENST00000541770 RBM6P78332 1123 aaKnown RBP13.19□□□□□ -0.3
CLSTN3-212ENST00000541770 SPHKAPQ2M3C7 1700 aa13.19□□□□□ -0.3
CLSTN3-212ENST00000541770 NALCNQ8IZF0 1738 aa13.19□□□□□ -0.3
CLSTN3-212ENST00000541770 ITGAEP38570 1179 aa13.18□□□□□ -0.3
CLSTN3-212ENST00000541770 NGLY1Q96IV0 654 aa13.18□□□□□ -0.3
CLSTN3-212ENST00000541770 NUP155O75694 1391 aa13.18□□□□□ -0.3
CLSTN3-212ENST00000541770 PNPLA6Q8IY17 1366 aa13.17□□□□□ -0.3
CLSTN3-212ENST00000541770 SETBP1Q9Y6X0 1596 aa13.16□□□□□ -0.3
CLSTN3-212ENST00000541770 METP08581 1390 aa13.15□□□□□ -0.3
CLSTN3-212ENST00000541770 ADGRL3Q9HAR2 1447 aa13.14□□□□□ -0.31
CLSTN3-212ENST00000541770 USP21Q9UK80 565 aa13.13□□□□□ -0.31
CLSTN3-212ENST00000541770 KIF1BO60333 1816 aa13.13□□□□□ -0.31
CLSTN3-212ENST00000541770 ROCK1Q13464 1354 aa13.12□□□□□ -0.31
CLSTN3-212ENST00000541770 ATAD2Q6PL18 1390 aa13.12□□□□□ -0.31
CLSTN3-212ENST00000541770 C1orf167Q5SNV9 1468 aa13.1□□□□□ -0.31
CLSTN3-212ENST00000541770 CLTCL1P53675 1640 aa13.1□□□□□ -0.31
CLSTN3-212ENST00000541770 NEXMIFQ5QGS0 1516 aa13.09□□□□□ -0.31
CLSTN3-212ENST00000541770 FOXD1Q16676 465 aa13.09□□□□□ -0.31
CLSTN3-212ENST00000541770 ORAI2Q96SN7 254 aa13.09□□□□□ -0.31
CLSTN3-212ENST00000541770 ZRANB1Q9UGI0 708 aa13.09□□□□□ -0.31
CLSTN3-212ENST00000541770 TRPC5Q9UL62 973 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-212ENST00000541770 MARF1Q9Y4F3 1742 aaKnown RBP13.07□□□□□ -0.32
CLSTN3-212ENST00000541770 LAMC1P11047 1609 aa13.06□□□□□ -0.32
CLSTN3-212ENST00000541770 SOS2Q07890 1332 aaPredicted RBP13.06□□□□□ -0.32
CLSTN3-212ENST00000541770 PTCH1Q13635 1447 aa13.05□□□□□ -0.32
CLSTN3-212ENST00000541770 COL22A1Q8NFW1 1626 aaPredicted RBP13.05□□□□□ -0.32
CLSTN3-212ENST00000541770 ROBO2Q9HCK4 1378 aa13.04□□□□□ -0.32
CLSTN3-212ENST00000541770 ATRNO75882 1429 aa13.04□□□□□ -0.32
CLSTN3-212ENST00000541770 ESCO1Q5FWF5 840 aa13.03□□□□□ -0.32
CLSTN3-212ENST00000541770 FNBP4Q8N3X1 1017 aaPredicted RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms