RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 RALBP1Q15311 655 aa18.83■□□□□ 0.6
RTN3-210ENST00000540798 SIGLEC1Q9BZZ2 1709 aa18.82■□□□□ 0.6
RTN3-210ENST00000540798 PIK3C2BO00750 1634 aa18.82■□□□□ 0.6
RTN3-210ENST00000540798 DIP2BQ9P265 1576 aa18.81■□□□□ 0.6
RTN3-210ENST00000540798 BRD4O60885 1362 aaPredicted RBP18.81■□□□□ 0.6
RTN3-210ENST00000540798 WASHC2CQ9Y4E1 1318 aa18.81■□□□□ 0.6
RTN3-210ENST00000540798 ZMYM4Q5VZL5 1548 aa18.81■□□□□ 0.6
RTN3-210ENST00000540798 TMF1P82094 1093 aa18.8■□□□□ 0.6
RTN3-210ENST00000540798 MYBBP1AQ9BQG0 1328 aaKnown RBP18.8■□□□□ 0.6
RTN3-210ENST00000540798 MYO3AQ8NEV4 1616 aa18.8■□□□□ 0.6
RTN3-210ENST00000540798 FKBP8Q14318 412 aa18.8■□□□□ 0.6
RTN3-210ENST00000540798 LRPPRCP42704 1394 aaKnown RBP18.79■□□□□ 0.6
RTN3-210ENST00000540798 SYNMO15061 1565 aa18.79■□□□□ 0.6
RTN3-210ENST00000540798 SETBP1Q9Y6X0 1596 aa18.79■□□□□ 0.6
RTN3-210ENST00000540798 MYOM1P52179 1685 aa18.79■□□□□ 0.6
RTN3-210ENST00000540798 PNISRQ8TF01 805 aaKnown RBP18.78■□□□□ 0.6
RTN3-210ENST00000540798 NOS1P29475 1434 aa18.78■□□□□ 0.6
RTN3-210ENST00000540798 RAPGEF3O95398 923 aa18.77■□□□□ 0.6
RTN3-210ENST00000540798 ARHGAP31Q2M1Z3 1444 aa18.77■□□□□ 0.59
RTN3-210ENST00000540798 EIF3AQ14152 1382 aaKnown RBP18.75■□□□□ 0.59
RTN3-210ENST00000540798 NEFLP07196 543 aa18.75■□□□□ 0.59
RTN3-210ENST00000540798 CFAP65Q6ZU64 1925 aaKnown RBP18.74■□□□□ 0.59
RTN3-210ENST00000540798 ADGRF5Q8IZF2 1346 aa18.74■□□□□ 0.59
RTN3-210ENST00000540798 KDM5AP29375 1690 aaKnown RBP18.74■□□□□ 0.59
RTN3-210ENST00000540798 YEATS2Q9ULM3 1422 aa18.73■□□□□ 0.59
RTN3-210ENST00000540798 PIK3C2GO75747 1445 aa18.72■□□□□ 0.59
RTN3-210ENST00000540798 GGT6Q6P531 493 aa18.72■□□□□ 0.59
RTN3-210ENST00000540798 REREQ9P2R6 1566 aa18.71■□□□□ 0.59
RTN3-210ENST00000540798 TMC1Q8TDI8 760 aa18.71■□□□□ 0.59
RTN3-210ENST00000540798 PANK3Q9H999 370 aa18.7■□□□□ 0.58
RTN3-210ENST00000540798 NLRP13Q86W25 1043 aa18.69■□□□□ 0.58
RTN3-210ENST00000540798 SMG6Q86US8 1419 aaKnown RBP18.69■□□□□ 0.58
RTN3-210ENST00000540798 ADGRB1O14514 1584 aa18.69■□□□□ 0.58
RTN3-210ENST00000540798 RPGRIP1LQ68CZ1 1315 aa18.69■□□□□ 0.58
RTN3-210ENST00000540798 CFAP70Q5T0N1 1121 aa18.69■□□□□ 0.58
RTN3-210ENST00000540798 CDCA8Q53HL2 280 aa18.68■□□□□ 0.58
RTN3-210ENST00000540798 INSRP06213 1382 aa18.68■□□□□ 0.58
RTN3-210ENST00000540798 SBNO2Q9Y2G9 1366 aa18.68■□□□□ 0.58
RTN3-210ENST00000540798 ERVK-7P63135 1459 aa18.68■□□□□ 0.58
RTN3-210ENST00000540798 PREX1Q8TCU6 1659 aa18.68■□□□□ 0.58
RTN3-210ENST00000540798 NEXMIFQ5QGS0 1516 aa18.68■□□□□ 0.58
RTN3-210ENST00000540798 CNGB1Q14028 1251 aaPredicted RBP18.67■□□□□ 0.58
RTN3-210ENST00000540798 SLC24A1O60721 1099 aa18.66■□□□□ 0.58
RTN3-210ENST00000540798 TSPOAP1O95153 1857 aa18.64■□□□□ 0.58
RTN3-210ENST00000540798 ERICH6BQ5W0A0 696 aa18.64■□□□□ 0.57
RTN3-210ENST00000540798 AGLP35573 1532 aa18.64■□□□□ 0.57
RTN3-210ENST00000540798 BCANQ96GW7 911 aa18.63■□□□□ 0.57
RTN3-210ENST00000540798 NPC1L1Q9UHC9 1359 aa18.63■□□□□ 0.57
RTN3-210ENST00000540798 C14orf93Q9H972 538 aaKnown RBP18.63■□□□□ 0.57
RTN3-210ENST00000540798 ASXL1Q8IXJ9 1541 aa18.63■□□□□ 0.57
RTN3-210ENST00000540798 QRICH2Q9H0J4 1663 aa18.63■□□□□ 0.57
RTN3-210ENST00000540798 FAM69CQ0P6D2 419 aa18.62■□□□□ 0.57
RTN3-210ENST00000540798 KIF13AQ9H1H9 1805 aa18.61■□□□□ 0.57
RTN3-210ENST00000540798 TMEM131LA2VDJ0 1609 aa18.61■□□□□ 0.57
RTN3-210ENST00000540798 MYO5BQ9ULV0 1848 aa18.61■□□□□ 0.57
RTN3-210ENST00000540798 ZFYVE9O95405 1425 aa18.61■□□□□ 0.57
RTN3-210ENST00000540798 AMER1Q5JTC6 1135 aaPredicted RBP18.6■□□□□ 0.57
RTN3-210ENST00000540798 BLMP54132 1417 aaPredicted RBP18.6■□□□□ 0.57
RTN3-210ENST00000540798 CC2D1BQ5T0F9 858 aaKnown RBP18.59■□□□□ 0.57
RTN3-210ENST00000540798 ARHGEF28Q8N1W1 1705 aaKnown RBP18.59■□□□□ 0.57
RTN3-210ENST00000540798 NUDCQ9Y266 331 aa18.59■□□□□ 0.57
RTN3-210ENST00000540798 RNF123Q5XPI4 1314 aa18.57■□□□□ 0.56
RTN3-210ENST00000540798 TRHP20396 242 aaPredicted RBP18.57■□□□□ 0.56
RTN3-210ENST00000540798 CHGAP10645 457 aaKnown RBP18.56■□□□□ 0.56
RTN3-210ENST00000540798 SLC52A1Q9NWF4 448 aa18.56■□□□□ 0.56
RTN3-210ENST00000540798 KNSTRNQ9Y448 316 aa18.55■□□□□ 0.56
RTN3-210ENST00000540798 CENPJQ9HC77 1338 aaPredicted RBP18.54■□□□□ 0.56
RTN3-210ENST00000540798 IDI1Q13907 227 aa18.53■□□□□ 0.56
RTN3-210ENST00000540798 PPP6R1Q9UPN7 881 aa18.53■□□□□ 0.56
RTN3-210ENST00000540798 ARHGEF40Q8TER5 1519 aa18.53■□□□□ 0.56
RTN3-210ENST00000540798 TSHZ2Q9NRE2 1034 aa18.52■□□□□ 0.56
RTN3-210ENST00000540798 CLTCQ00610 1675 aaKnown RBP18.52■□□□□ 0.56
RTN3-210ENST00000540798 USP32Q8NFA0 1604 aa18.52■□□□□ 0.55
RTN3-210ENST00000540798 VGFO15240 615 aaPredicted RBP18.52■□□□□ 0.55
RTN3-210ENST00000540798 ANP32EQ9BTT0 268 aa18.52■□□□□ 0.55
RTN3-210ENST00000540798 PPP2R1AP30153 589 aa18.51■□□□□ 0.55
RTN3-210ENST00000540798 SPATA31D1Q6ZQQ2 1576 aa18.5■□□□□ 0.55
RTN3-210ENST00000540798 IRX6P78412 446 aaPredicted RBP18.49■□□□□ 0.55
RTN3-210ENST00000540798 TULP4Q9NRJ4 1543 aa18.47■□□□□ 0.55
RTN3-210ENST00000540798 PDE3BQ13370 1112 aa18.47■□□□□ 0.55
RTN3-210ENST00000540798 PPP4R2Q9NY27 417 aa18.47■□□□□ 0.55
RTN3-210ENST00000540798 PUS7Q96PZ0 661 aaKnown RBP18.47■□□□□ 0.55
RTN3-210ENST00000540798 TRAK1Q9UPV9 953 aa18.47■□□□□ 0.55
RTN3-210ENST00000540798 CARD14Q9BXL6 1004 aa18.47■□□□□ 0.55
RTN3-210ENST00000540798 TMEM132EQ6IEE7 984 aa18.46■□□□□ 0.55
RTN3-210ENST00000540798 PTPRMP28827 1452 aa18.42■□□□□ 0.54
RTN3-210ENST00000540798 SETD1AO15047 1707 aaKnown RBP18.42■□□□□ 0.54
RTN3-210ENST00000540798 ALKQ9UM73 1620 aa18.41■□□□□ 0.54
RTN3-210ENST00000540798 FBXO31Q5XUX0 539 aaPredicted RBP18.41■□□□□ 0.54
RTN3-210ENST00000540798 ADAMTS8Q9UP79 889 aa18.4■□□□□ 0.54
RTN3-210ENST00000540798 SENP3-EIF4A1A0A087X0R7 540 aa18.4■□□□□ 0.54
RTN3-210ENST00000540798 NUTM2DQ5VT03 806 aaPredicted RBP18.4■□□□□ 0.54
RTN3-210ENST00000540798 A2ML1A8K2U0 1454 aa18.4■□□□□ 0.54
RTN3-210ENST00000540798 NSD3Q9BZ95 1437 aa18.38■□□□□ 0.53
RTN3-210ENST00000540798 SHPRHQ149N8 1683 aa18.37■□□□□ 0.53
RTN3-210ENST00000540798 EVC2Q86UK5 1308 aa18.37■□□□□ 0.53
RTN3-210ENST00000540798 YTHDC2Q9H6S0 1430 aaKnown RBP18.36■□□□□ 0.53
RTN3-210ENST00000540798 POLR3AO14802 1390 aaPredicted RBP18.35■□□□□ 0.53
RTN3-210ENST00000540798 DLC1Q96QB1 1528 aa18.35■□□□□ 0.53
RTN3-210ENST00000540798 ANKRD36BQ8N2N9 1353 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms