RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 LMTK3Q96Q04 1460 aa15.41■□□□□ 0.06
VPS33A-204ENST00000540669 SETD1AO15047 1707 aaKnown RBP15.41■□□□□ 0.06
VPS33A-204ENST00000540669 UHRF1BP1Q6BDS2 1440 aa15.41■□□□□ 0.06
VPS33A-204ENST00000540669 NRXN3Q9Y4C0 1643 aa15.4■□□□□ 0.06
VPS33A-204ENST00000540669 TIMELESSQ9UNS1 1208 aa15.4■□□□□ 0.06
VPS33A-204ENST00000540669 KIAA1210Q9ULL0 1709 aa15.4■□□□□ 0.06
VPS33A-204ENST00000540669 POLR1AO95602 1720 aaPredicted RBP15.39■□□□□ 0.05
VPS33A-204ENST00000540669 SETBP1Q9Y6X0 1596 aa15.37■□□□□ 0.05
VPS33A-204ENST00000540669 LAMC1P11047 1609 aa15.37■□□□□ 0.05
VPS33A-204ENST00000540669 TRPM1Q7Z4N2 1603 aa15.37■□□□□ 0.05
VPS33A-204ENST00000540669 SCAF1Q9H7N4 1312 aaKnown RBP15.36■□□□□ 0.05
VPS33A-204ENST00000540669 TMEM2Q9UHN6 1383 aa15.36■□□□□ 0.05
VPS33A-204ENST00000540669 PIK3C2GO75747 1445 aa15.35■□□□□ 0.05
VPS33A-204ENST00000540669 PRAG1Q86YV5 1406 aa15.35■□□□□ 0.05
VPS33A-204ENST00000540669 RPGRIP1LQ68CZ1 1315 aa15.34■□□□□ 0.05
VPS33A-204ENST00000540669 IQGAP1P46940 1657 aa15.34■□□□□ 0.05
VPS33A-204ENST00000540669 TONSLQ96HA7 1378 aa15.33■□□□□ 0.04
VPS33A-204ENST00000540669 RIMS2Q9UQ26 1411 aa15.33■□□□□ 0.04
VPS33A-204ENST00000540669 MED14O60244 1454 aa15.33■□□□□ 0.04
VPS33A-204ENST00000540669 RALGAPBQ86X10 1494 aa15.33■□□□□ 0.04
VPS33A-204ENST00000540669 ASXL1Q8IXJ9 1541 aa15.33■□□□□ 0.04
VPS33A-204ENST00000540669 KCNA4P22459 653 aa15.32■□□□□ 0.04
VPS33A-204ENST00000540669 L3MBTL2Q969R5 705 aa15.32■□□□□ 0.04
VPS33A-204ENST00000540669 STAC3Q96MF2 364 aa15.31■□□□□ 0.04
VPS33A-204ENST00000540669 SCAF11Q99590 1463 aaKnown RBP15.31■□□□□ 0.04
VPS33A-204ENST00000540669 ADGRB1O14514 1584 aa15.31■□□□□ 0.04
VPS33A-204ENST00000540669 DIP2AQ14689 1571 aa15.31■□□□□ 0.04
VPS33A-204ENST00000540669 STRCQ7RTU9 1775 aa15.31■□□□□ 0.04
VPS33A-204ENST00000540669 GPRASP1Q5JY77 1395 aa15.29■□□□□ 0.04
VPS33A-204ENST00000540669 PLEKHG1Q9ULL1 1385 aa15.27■□□□□ 0.04
VPS33A-204ENST00000540669 NEUROD1Q13562 356 aa15.27■□□□□ 0.04
VPS33A-204ENST00000540669 ADAMTS13Q76LX8 1427 aa15.26■□□□□ 0.03
VPS33A-204ENST00000540669 KNDC1Q76NI1 1749 aa15.26■□□□□ 0.03
VPS33A-204ENST00000540669 ALKQ9UM73 1620 aa15.26■□□□□ 0.03
VPS33A-204ENST00000540669 PPP1R15AO75807 674 aaPredicted RBP15.26■□□□□ 0.03
VPS33A-204ENST00000540669 ADGRF5Q8IZF2 1346 aa15.24■□□□□ 0.03
VPS33A-204ENST00000540669 XRN1Q8IZH2 1706 aaKnown RBP15.24■□□□□ 0.03
VPS33A-204ENST00000540669 THEMISQ8N1K5 641 aaPredicted RBP15.24■□□□□ 0.03
VPS33A-204ENST00000540669 ZEB1P37275 1124 aaPredicted RBP15.23■□□□□ 0.03
VPS33A-204ENST00000540669 NBPF8Q3BBV2 869 aa15.23■□□□□ 0.03
VPS33A-204ENST00000540669 NWD1Q149M9 1564 aa15.23■□□□□ 0.03
VPS33A-204ENST00000540669 LTKP29376 864 aa15.22■□□□□ 0.03
VPS33A-204ENST00000540669 RGL3Q3MIN7 710 aa15.22■□□□□ 0.03
VPS33A-204ENST00000540669 NCBP3Q53F19 620 aaKnown RBP15.21■□□□□ 0.03
VPS33A-204ENST00000540669 ARHGEF28Q8N1W1 1705 aaKnown RBP15.2■□□□□ 0.02
VPS33A-204ENST00000540669 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.2■□□□□ 0.02
VPS33A-204ENST00000540669 DCAF11Q8TEB1 546 aa15.2■□□□□ 0.02
VPS33A-204ENST00000540669 CPS1P31327 1500 aa15.2■□□□□ 0.02
VPS33A-204ENST00000540669 TECPR2O15040 1411 aa15.19■□□□□ 0.02
VPS33A-204ENST00000540669 VGFO15240 615 aaPredicted RBP15.19■□□□□ 0.02
VPS33A-204ENST00000540669 NPHP4O75161 1426 aaPredicted RBP15.18■□□□□ 0.02
VPS33A-204ENST00000540669 DLC1Q96QB1 1528 aa15.18■□□□□ 0.02
VPS33A-204ENST00000540669 CHD2O14647 1828 aaKnown RBP15.18■□□□□ 0.02
VPS33A-204ENST00000540669 CHGAP10645 457 aaKnown RBP15.18■□□□□ 0.02
VPS33A-204ENST00000540669 ZNF326Q5BKZ1 582 aaKnown RBP15.17■□□□□ 0.02
VPS33A-204ENST00000540669 C14orf93Q9H972 538 aaKnown RBP15.17■□□□□ 0.02
VPS33A-204ENST00000540669 STAG3Q9UJ98 1225 aa15.17■□□□□ 0.02
VPS33A-204ENST00000540669 DMRT2Q9Y5R5 561 aa15.17■□□□□ 0.02
VPS33A-204ENST00000540669 PIK3R4Q99570 1358 aa15.15■□□□□ 0.02
VPS33A-204ENST00000540669 STRCP1A6NGW2 1772 aa15.14■□□□□ 0.01
VPS33A-204ENST00000540669 HSPA2P54652 639 aa15.14■□□□□ 0.01
VPS33A-204ENST00000540669 PTCH1Q13635 1447 aa15.13■□□□□ 0.01
VPS33A-204ENST00000540669 TXNDC2Q86VQ3 553 aa15.13■□□□□ 0.01
VPS33A-204ENST00000540669 PTPRUQ92729 1446 aa15.13■□□□□ 0.01
VPS33A-204ENST00000540669 METP08581 1390 aa15.12■□□□□ 0.01
VPS33A-204ENST00000540669 HDGFP51858 240 aaKnown RBP15.12■□□□□ 0.01
VPS33A-204ENST00000540669 MAPK8IP2Q13387 824 aaPredicted RBP15.12■□□□□ 0.01
VPS33A-204ENST00000540669 ANKLE2Q86XL3 938 aa15.12■□□□□ 0.01
VPS33A-204ENST00000540669 EID1Q9Y6B2 187 aa15.12■□□□□ 0.01
VPS33A-204ENST00000540669 YTHDC2Q9H6S0 1430 aaKnown RBP15.11■□□□□ 0.01
VPS33A-204ENST00000540669 KDM2AQ9Y2K7 1162 aa15.11■□□□□ 0.01
VPS33A-204ENST00000540669 LRPPRCP42704 1394 aaKnown RBP15.11■□□□□ 0.01
VPS33A-204ENST00000540669 NKTRP30414 1462 aaKnown RBP15.1■□□□□ 0.01
VPS33A-204ENST00000540669 CFAP70Q5T0N1 1121 aa15.1■□□□□ 0.01
VPS33A-204ENST00000540669 NUTM2DQ5VT03 806 aaPredicted RBP15.1■□□□□ 0.01
VPS33A-204ENST00000540669 CNKSR2Q8WXI2 1034 aa15.1■□□□□ 0.01
VPS33A-204ENST00000540669 TBX22Q9Y458 520 aa15.1■□□□□ 0.01
VPS33A-204ENST00000540669 ADGRB2O60241 1585 aa15.1■□□□□ 0.01
VPS33A-204ENST00000540669 ROCK2O75116 1388 aaKnown RBP15.1■□□□□ 0.01
VPS33A-204ENST00000540669 ABCC11Q96J66 1382 aa15.1■□□□□ 0.01
VPS33A-204ENST00000540669 NBPF1Q3BBV0 1214 aa15.09■□□□□ 0.01
VPS33A-204ENST00000540669 QRICH2Q9H0J4 1663 aa15.09■□□□□ 0.01
VPS33A-204ENST00000540669 SBNO2Q9Y2G9 1366 aa15.09■□□□□ 0.01
VPS33A-204ENST00000540669 FAM135BQ49AJ0 1406 aa15.08■□□□□ 0
VPS33A-204ENST00000540669 NCKAP5LQ9HCH0 1330 aa15.07■□□□□ 0
VPS33A-204ENST00000540669 USP47Q96K76 1375 aa15.07■□□□□ 0
VPS33A-204ENST00000540669 XIRP1Q702N8 1843 aaKnown RBP15.06■□□□□ 0
VPS33A-204ENST00000540669 NALCNQ8IZF0 1738 aa15.04■□□□□ -0
VPS33A-204ENST00000540669 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.04■□□□□ -0
VPS33A-204ENST00000540669 LTBP4Q8N2S1 1624 aa15.03■□□□□ -0
VPS33A-204ENST00000540669 TULP4Q9NRJ4 1543 aa15.02■□□□□ -0
VPS33A-204ENST00000540669 ROBO2Q9HCK4 1378 aa15.02■□□□□ -0
VPS33A-204ENST00000540669 SIRT1Q96EB6 747 aa15.02■□□□□ -0
VPS33A-204ENST00000540669 SLC26A8Q96RN1 970 aa15.01□□□□□ -0.01
VPS33A-204ENST00000540669 CDC42BPGQ6DT37 1551 aa15.01□□□□□ -0.01
VPS33A-204ENST00000540669 EIF3AQ14152 1382 aaKnown RBP15□□□□□ -0.01
VPS33A-204ENST00000540669 TMEM132EQ6IEE7 984 aa15□□□□□ -0.01
VPS33A-204ENST00000540669 CARD11Q9BXL7 1154 aa15□□□□□ -0.01
VPS33A-204ENST00000540669 TESK2Q96S53 571 aa14.99□□□□□ -0.01
VPS33A-204ENST00000540669 MYOM1P52179 1685 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms