RNA–Protein interactions for RNA: ENST00000540590.1

LMO3-223, Transcript of LIM domain only 3, humanhuman

TSL 4

Gene LMO3, Length 565 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-223ENST00000540590 STAC3Q96MF2 364 aa17.99■□□□□ 0.47
LMO3-223ENST00000540590 PPP1R15AO75807 674 aaPredicted RBP17.98■□□□□ 0.47
LMO3-223ENST00000540590 RGL3Q3MIN7 710 aa17.98■□□□□ 0.47
LMO3-223ENST00000540590 PTPRMP28827 1452 aa17.97■□□□□ 0.47
LMO3-223ENST00000540590 PPLO60437 1756 aa17.96■□□□□ 0.47
LMO3-223ENST00000540590 CHGAP10645 457 aaKnown RBP17.96■□□□□ 0.47
LMO3-223ENST00000540590 MYO3AQ8NEV4 1616 aa17.96■□□□□ 0.47
LMO3-223ENST00000540590 NLRP1Q9C000 1473 aa17.95■□□□□ 0.46
LMO3-223ENST00000540590 SETD1BQ9UPS6 1966 aaKnown RBP17.95■□□□□ 0.46
LMO3-223ENST00000540590 UBR1Q8IWV7 1749 aa17.94■□□□□ 0.46
LMO3-223ENST00000540590 DCAF11Q8TEB1 546 aa17.93■□□□□ 0.46
LMO3-223ENST00000540590 NEXMIFQ5QGS0 1516 aa17.92■□□□□ 0.46
LMO3-223ENST00000540590 A2ML1A8K2U0 1454 aa17.91■□□□□ 0.46
LMO3-223ENST00000540590 KDM2AQ9Y2K7 1162 aa17.91■□□□□ 0.46
LMO3-223ENST00000540590 UHRF1BP1Q6BDS2 1440 aa17.9■□□□□ 0.46
LMO3-223ENST00000540590 ZNF326Q5BKZ1 582 aaKnown RBP17.9■□□□□ 0.46
LMO3-223ENST00000540590 ZNF142P52746 1687 aaPredicted RBP17.9■□□□□ 0.46
LMO3-223ENST00000540590 MYOM2P54296 1465 aa17.89■□□□□ 0.45
LMO3-223ENST00000540590 KDM4FA0A1W2PPD8 638 aa17.89■□□□□ 0.45
LMO3-223ENST00000540590 NBPF8Q3BBV2 869 aa17.89■□□□□ 0.45
LMO3-223ENST00000540590 STAG3Q9UJ98 1225 aa17.89■□□□□ 0.45
LMO3-223ENST00000540590 RPGRIP1LQ68CZ1 1315 aa17.89■□□□□ 0.45
LMO3-223ENST00000540590 CEP170BQ9Y4F5 1589 aaPredicted RBP17.88■□□□□ 0.45
LMO3-223ENST00000540590 PRAG1Q86YV5 1406 aa17.88■□□□□ 0.45
LMO3-223ENST00000540590 TRPM1Q7Z4N2 1603 aa17.87■□□□□ 0.45
LMO3-223ENST00000540590 NRXN1Q9ULB1 1477 aa17.84■□□□□ 0.45
LMO3-223ENST00000540590 RALGAPBQ86X10 1494 aa17.83■□□□□ 0.45
LMO3-223ENST00000540590 ZFYVE9O95405 1425 aa17.83■□□□□ 0.45
LMO3-223ENST00000540590 RIMS2Q9UQ26 1411 aa17.83■□□□□ 0.45
LMO3-223ENST00000540590 KIAA1210Q9ULL0 1709 aa17.83■□□□□ 0.44
LMO3-223ENST00000540590 ADGRF5Q8IZF2 1346 aa17.82■□□□□ 0.44
LMO3-223ENST00000540590 NPM3O75607 178 aaKnown RBP17.82■□□□□ 0.44
LMO3-223ENST00000540590 TMEM2Q9UHN6 1383 aa17.8■□□□□ 0.44
LMO3-223ENST00000540590 HDGFP51858 240 aaKnown RBP17.8■□□□□ 0.44
LMO3-223ENST00000540590 SLIT1O75093 1534 aa17.8■□□□□ 0.44
LMO3-223ENST00000540590 VGFO15240 615 aaPredicted RBP17.79■□□□□ 0.44
LMO3-223ENST00000540590 NUTM2DQ5VT03 806 aaPredicted RBP17.79■□□□□ 0.44
LMO3-223ENST00000540590 ARHGAP23Q9P227 1491 aa17.79■□□□□ 0.44
LMO3-223ENST00000540590 PIK3C2GO75747 1445 aa17.79■□□□□ 0.44
LMO3-223ENST00000540590 LAMC1P11047 1609 aa17.77■□□□□ 0.44
LMO3-223ENST00000540590 THEMISQ8N1K5 641 aaPredicted RBP17.77■□□□□ 0.44
LMO3-223ENST00000540590 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.77■□□□□ 0.44
LMO3-223ENST00000540590 NRXN3Q9Y4C0 1643 aa17.75■□□□□ 0.43
LMO3-223ENST00000540590 IQGAP1P46940 1657 aa17.74■□□□□ 0.43
LMO3-223ENST00000540590 ROCK2O75116 1388 aaKnown RBP17.74■□□□□ 0.43
LMO3-223ENST00000540590 GPRASP1Q5JY77 1395 aa17.74■□□□□ 0.43
LMO3-223ENST00000540590 SETD1AO15047 1707 aaKnown RBP17.73■□□□□ 0.43
LMO3-223ENST00000540590 NBPF1Q3BBV0 1214 aa17.73■□□□□ 0.43
LMO3-223ENST00000540590 SETBP1Q9Y6X0 1596 aa17.73■□□□□ 0.43
LMO3-223ENST00000540590 CFAP70Q5T0N1 1121 aa17.72■□□□□ 0.43
LMO3-223ENST00000540590 ALKQ9UM73 1620 aa17.72■□□□□ 0.43
LMO3-223ENST00000540590 SCAF11Q99590 1463 aaKnown RBP17.71■□□□□ 0.43
LMO3-223ENST00000540590 LTKP29376 864 aa17.71■□□□□ 0.43
LMO3-223ENST00000540590 POLR1AO95602 1720 aaPredicted RBP17.71■□□□□ 0.43
LMO3-223ENST00000540590 TXNDC2Q86VQ3 553 aa17.7■□□□□ 0.42
LMO3-223ENST00000540590 CARD11Q9BXL7 1154 aa17.7■□□□□ 0.42
LMO3-223ENST00000540590 C14orf93Q9H972 538 aaKnown RBP17.7■□□□□ 0.42
LMO3-223ENST00000540590 EID1Q9Y6B2 187 aa17.7■□□□□ 0.42
LMO3-223ENST00000540590 ASXL1Q8IXJ9 1541 aa17.7■□□□□ 0.42
LMO3-223ENST00000540590 ADGRB1O14514 1584 aa17.7■□□□□ 0.42
LMO3-223ENST00000540590 PLEKHG1Q9ULL1 1385 aa17.69■□□□□ 0.42
LMO3-223ENST00000540590 LMTK3Q96Q04 1460 aa17.67■□□□□ 0.42
LMO3-223ENST00000540590 USP47Q96K76 1375 aa17.66■□□□□ 0.42
LMO3-223ENST00000540590 EIF4G2P78344 907 aaKnown RBP eCLIP17.66■□□□□ 0.42
LMO3-223ENST00000540590 ADAMTS13Q76LX8 1427 aa17.65■□□□□ 0.42
LMO3-223ENST00000540590 HSPA5P11021 654 aaKnown RBP17.65■□□□□ 0.42
LMO3-223ENST00000540590 DIP2AQ14689 1571 aa17.65■□□□□ 0.42
LMO3-223ENST00000540590 ANKLE2Q86XL3 938 aa17.64■□□□□ 0.41
LMO3-223ENST00000540590 TMEM132EQ6IEE7 984 aa17.63■□□□□ 0.41
LMO3-223ENST00000540590 MED14O60244 1454 aa17.63■□□□□ 0.41
LMO3-223ENST00000540590 ARHGEF28Q8N1W1 1705 aaKnown RBP17.62■□□□□ 0.41
LMO3-223ENST00000540590 ZNF316A6NFI3 1004 aaPredicted RBP17.62■□□□□ 0.41
LMO3-223ENST00000540590 BCANQ96GW7 911 aa17.62■□□□□ 0.41
LMO3-223ENST00000540590 HIRIP3Q9BW71 556 aaPredicted RBP17.62■□□□□ 0.41
LMO3-223ENST00000540590 KNDC1Q76NI1 1749 aa17.59■□□□□ 0.41
LMO3-223ENST00000540590 YTHDC2Q9H6S0 1430 aaKnown RBP17.59■□□□□ 0.41
LMO3-223ENST00000540590 HSPA2P54652 639 aa17.59■□□□□ 0.41
LMO3-223ENST00000540590 NPHP4O75161 1426 aaPredicted RBP17.58■□□□□ 0.41
LMO3-223ENST00000540590 METP08581 1390 aa17.58■□□□□ 0.4
LMO3-223ENST00000540590 NCKAP5LQ9HCH0 1330 aa17.58■□□□□ 0.4
LMO3-223ENST00000540590 SLC24A1O60721 1099 aa17.58■□□□□ 0.4
LMO3-223ENST00000540590 STRCQ7RTU9 1775 aa17.58■□□□□ 0.4
LMO3-223ENST00000540590 ST20-MTHFSA0A0A6YYL1 179 aa17.57■□□□□ 0.4
LMO3-223ENST00000540590 SLC26A8Q96RN1 970 aa17.57■□□□□ 0.4
LMO3-223ENST00000540590 LRPPRCP42704 1394 aaKnown RBP17.56■□□□□ 0.4
LMO3-223ENST00000540590 EIF3AQ14152 1382 aaKnown RBP17.56■□□□□ 0.4
LMO3-223ENST00000540590 PIK3R4Q99570 1358 aa17.56■□□□□ 0.4
LMO3-223ENST00000540590 QRICH2Q9H0J4 1663 aa17.56■□□□□ 0.4
LMO3-223ENST00000540590 TRAK1Q9UPV9 953 aa17.56■□□□□ 0.4
LMO3-223ENST00000540590 TBX22Q9Y458 520 aa17.56■□□□□ 0.4
LMO3-223ENST00000540590 DLC1Q96QB1 1528 aa17.55■□□□□ 0.4
LMO3-223ENST00000540590 CHD2O14647 1828 aaKnown RBP17.54■□□□□ 0.4
LMO3-223ENST00000540590 STK26Q9P289 416 aa17.54■□□□□ 0.4
LMO3-223ENST00000540590 CPS1P31327 1500 aa17.53■□□□□ 0.4
LMO3-223ENST00000540590 XRN1Q8IZH2 1706 aaKnown RBP17.53■□□□□ 0.4
LMO3-223ENST00000540590 PTPRUQ92729 1446 aa17.53■□□□□ 0.4
LMO3-223ENST00000540590 ABCC11Q96J66 1382 aa17.53■□□□□ 0.4
LMO3-223ENST00000540590 TECPR2O15040 1411 aa17.52■□□□□ 0.4
LMO3-223ENST00000540590 TESK2Q96S53 571 aa17.51■□□□□ 0.39
LMO3-223ENST00000540590 U3KPZ7 1027 aaPredicted RBP17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms