RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 SRPK2P78362 688 aaKnown RBP16.35■□□□□ 0.21
MSH6-210ENST00000540021 VSIG10Q8N0Z9 540 aa16.35■□□□□ 0.21
MSH6-210ENST00000540021 GPATCH8Q9UKJ3 1502 aaKnown RBP16.35■□□□□ 0.21
MSH6-210ENST00000540021 EIF3AQ14152 1382 aaKnown RBP16.34■□□□□ 0.21
MSH6-210ENST00000540021 ZKSCAN2Q63HK3 967 aa16.34■□□□□ 0.21
MSH6-210ENST00000540021 GGT6Q6P531 493 aa16.34■□□□□ 0.21
MSH6-210ENST00000540021 ELL2O00472 640 aaPredicted RBP16.34■□□□□ 0.21
MSH6-210ENST00000540021 TESK2Q96S53 571 aa16.34■□□□□ 0.21
MSH6-210ENST00000540021 SPAG9O60271 1321 aaKnown RBP16.34■□□□□ 0.21
MSH6-210ENST00000540021 NUP153P49790 1475 aaKnown RBP16.33■□□□□ 0.21
MSH6-210ENST00000540021 GCC2Q8IWJ2 1684 aa16.33■□□□□ 0.21
MSH6-210ENST00000540021 PTPRGP23470 1445 aa16.33■□□□□ 0.2
MSH6-210ENST00000540021 STAG3Q9UJ98 1225 aa16.33■□□□□ 0.2
MSH6-210ENST00000540021 LAMC3Q9Y6N6 1575 aa16.32■□□□□ 0.2
MSH6-210ENST00000540021 PDE3AQ14432 1141 aa16.32■□□□□ 0.2
MSH6-210ENST00000540021 HSP90AA2PQ14568 343 aaPredicted RBP16.32■□□□□ 0.2
MSH6-210ENST00000540021 LNPKQ9C0E8 428 aa16.32■□□□□ 0.2
MSH6-210ENST00000540021 TRAK2O60296 914 aa16.32■□□□□ 0.2
MSH6-210ENST00000540021 TSR2Q969E8 191 aaKnown RBP16.32■□□□□ 0.2
MSH6-210ENST00000540021 CHMP5Q9NZZ3 219 aa16.32■□□□□ 0.2
MSH6-210ENST00000540021 DZIP1LQ8IYY4 767 aaKnown RBP16.32■□□□□ 0.2
MSH6-210ENST00000540021 GBP4Q96PP9 640 aa16.31■□□□□ 0.2
MSH6-210ENST00000540021 SAMD9Q5K651 1589 aa16.31■□□□□ 0.2
MSH6-210ENST00000540021 MTHFSP49914 203 aa16.31■□□□□ 0.2
MSH6-210ENST00000540021 TNNQ9UQP3 1299 aa16.31■□□□□ 0.2
MSH6-210ENST00000540021 WWC1Q8IX03 1113 aa16.31■□□□□ 0.2
MSH6-210ENST00000540021 RUNDC1Q96C34 613 aa16.3■□□□□ 0.2
MSH6-210ENST00000540021 AFAP1Q8N556 730 aa16.3■□□□□ 0.2
MSH6-210ENST00000540021 SLC12A5Q9H2X9 1139 aa16.3■□□□□ 0.2
MSH6-210ENST00000540021 KDM2BQ8NHM5 1336 aa16.3■□□□□ 0.2
MSH6-210ENST00000540021 KIAA0586Q9BVV6 1533 aa16.3■□□□□ 0.2
MSH6-210ENST00000540021 KANK1Q14678 1352 aa16.3■□□□□ 0.2
MSH6-210ENST00000540021 ZNF608Q9ULD9 1512 aaPredicted RBP16.3■□□□□ 0.2
MSH6-210ENST00000540021 TBC1D2Q9BYX2 928 aa16.29■□□□□ 0.2
MSH6-210ENST00000540021 TMEM132EQ6IEE7 984 aa16.29■□□□□ 0.2
MSH6-210ENST00000540021 ANKRD45Q5TZF3 282 aa16.28■□□□□ 0.2
MSH6-210ENST00000540021 WDR62O43379 1518 aa16.28■□□□□ 0.2
MSH6-210ENST00000540021 DMRT2Q9Y5R5 561 aa16.28■□□□□ 0.2
MSH6-210ENST00000540021 BCORL1Q5H9F3 1711 aa16.28■□□□□ 0.2
MSH6-210ENST00000540021 MSNP26038 577 aaKnown RBP16.27■□□□□ 0.2
MSH6-210ENST00000540021 MCM4P33991 863 aa16.27■□□□□ 0.19
MSH6-210ENST00000540021 AMER1Q5JTC6 1135 aaPredicted RBP16.27■□□□□ 0.19
MSH6-210ENST00000540021 FOXD4L5Q5VV16 416 aaPredicted RBP16.26■□□□□ 0.19
MSH6-210ENST00000540021 FOXD4L4Q8WXT5 416 aaPredicted RBP16.26■□□□□ 0.19
MSH6-210ENST00000540021 PANK2Q9BZ23 570 aa16.26■□□□□ 0.19
MSH6-210ENST00000540021 DNMT1P26358 1616 aaKnown RBP16.26■□□□□ 0.19
MSH6-210ENST00000540021 PTMAP06454 111 aaKnown RBP16.26■□□□□ 0.19
MSH6-210ENST00000540021 DDX11L8A8MPP1 907 aa16.26■□□□□ 0.19
MSH6-210ENST00000540021 IPO8O15397 1037 aaKnown RBP16.26■□□□□ 0.19
MSH6-210ENST00000540021 PRAG1Q86YV5 1406 aa16.25■□□□□ 0.19
MSH6-210ENST00000540021 PCDHB15Q9Y5E8 787 aa16.25■□□□□ 0.19
MSH6-210ENST00000540021 NKTRP30414 1462 aaKnown RBP16.25■□□□□ 0.19
MSH6-210ENST00000540021 EXOSC9Q06265 439 aaKnown RBP16.24■□□□□ 0.19
MSH6-210ENST00000540021 RARSP54136 660 aaKnown RBP16.24■□□□□ 0.19
MSH6-210ENST00000540021 DDX49Q9Y6V7 483 aaKnown RBP16.24■□□□□ 0.19
MSH6-210ENST00000540021 DNTTIP2Q5QJE6 756 aaKnown RBP16.23■□□□□ 0.19
MSH6-210ENST00000540021 ARHGAP5Q13017 1502 aa16.23■□□□□ 0.19
MSH6-210ENST00000540021 KIF14Q15058 1648 aa16.23■□□□□ 0.19
MSH6-210ENST00000540021 MAGI1Q96QZ7 1491 aaPredicted RBP16.22■□□□□ 0.19
MSH6-210ENST00000540021 GGNBP2Q9H3C7 697 aa16.22■□□□□ 0.19
MSH6-210ENST00000540021 PLEKHH2Q8IVE3 1493 aa16.21■□□□□ 0.19
MSH6-210ENST00000540021 C1orf115Q9H7X2 142 aa16.21■□□□□ 0.19
MSH6-210ENST00000540021 UHRF1BP1Q6BDS2 1440 aa16.21■□□□□ 0.19
MSH6-210ENST00000540021 KDM5CP41229 1560 aa16.21■□□□□ 0.19
MSH6-210ENST00000540021 RLBP1P12271 317 aa16.21■□□□□ 0.19
MSH6-210ENST00000540021 PLCB2Q00722 1185 aa16.21■□□□□ 0.19
MSH6-210ENST00000540021 DDX19BQ9UMR2 479 aa16.21■□□□□ 0.19
MSH6-210ENST00000540021 MRE11P49959 708 aa16.21■□□□□ 0.18
MSH6-210ENST00000540021 NOL8Q76FK4 1167 aaKnown RBP16.2■□□□□ 0.18
MSH6-210ENST00000540021 RIPK4P57078 832 aa16.2■□□□□ 0.18
MSH6-210ENST00000540021 RRAGDQ9NQL2 400 aaPredicted RBP16.19■□□□□ 0.18
MSH6-210ENST00000540021 XRCC6P12956 609 aaKnown RBP eCLIP16.19■□□□□ 0.182e-10■■□□□ 12.2
MSH6-210ENST00000540021 MVPQ14764 893 aaKnown RBP16.19■□□□□ 0.18
MSH6-210ENST00000540021 FOXD4L6Q3SYB3 417 aaPredicted RBP16.19■□□□□ 0.18
MSH6-210ENST00000540021 FOXD4L3Q6VB84 417 aaPredicted RBP16.19■□□□□ 0.18
MSH6-210ENST00000540021 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.19■□□□□ 0.18
MSH6-210ENST00000540021 SOX12O15370 315 aa16.19■□□□□ 0.18
MSH6-210ENST00000540021 RAPGEF6Q8TEU7 1601 aa16.18■□□□□ 0.18
MSH6-210ENST00000540021 NGEFQ8N5V2 710 aa16.18■□□□□ 0.18
MSH6-210ENST00000540021 TBC1D32Q96NH3 1257 aa16.18■□□□□ 0.18
MSH6-210ENST00000540021 CABP2Q9NPB3 220 aa16.18■□□□□ 0.18
MSH6-210ENST00000540021 GRPEL1Q9HAV7 217 aa16.18■□□□□ 0.18
MSH6-210ENST00000540021 NOB1Q9ULX3 412 aaKnown RBP16.18■□□□□ 0.18
MSH6-210ENST00000540021 CALD1Q05682 793 aaKnown RBP16.17■□□□□ 0.18
MSH6-210ENST00000540021 CCDC141Q6ZP82 1450 aa16.17■□□□□ 0.18
MSH6-210ENST00000540021 LRRIQ1Q96JM4 1722 aa16.17■□□□□ 0.18
MSH6-210ENST00000540021 NPM1P06748 294 aaKnown RBP eCLIP16.16■□□□□ 0.18
MSH6-210ENST00000540021 GRIN2AQ12879 1464 aa16.16■□□□□ 0.18
MSH6-210ENST00000540021 CASC1Q6TDU7 716 aa16.16■□□□□ 0.18
MSH6-210ENST00000540021 SYNJ2O15056 1496 aa16.16■□□□□ 0.18
MSH6-210ENST00000540021 MRC2Q9UBG0 1479 aa16.16■□□□□ 0.18
MSH6-210ENST00000540021 ABCA5Q8WWZ7 1642 aa16.15■□□□□ 0.18
MSH6-210ENST00000540021 UBE2Q2Q8WVN8 375 aa16.14■□□□□ 0.18
MSH6-210ENST00000540021 BLMP54132 1417 aaPredicted RBP16.14■□□□□ 0.17
MSH6-210ENST00000540021 COL17A1Q9UMD9 1497 aaPredicted RBP16.14■□□□□ 0.17
MSH6-210ENST00000540021 MINK1Q8N4C8 1332 aaPredicted RBP16.14■□□□□ 0.17
MSH6-210ENST00000540021 ZMYM4Q5VZL5 1548 aa16.14■□□□□ 0.17
MSH6-210ENST00000540021 KIF21AQ7Z4S6 1674 aa16.13■□□□□ 0.17
MSH6-210ENST00000540021 ARHGEF12Q9NZN5 1544 aa16.13■□□□□ 0.17
MSH6-210ENST00000540021 FAM135AQ9P2D6 1515 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms