RNA–Protein interactions for RNA: ENST00000539721.5

TRAF3-204, Transcript of TNF receptor associated factor 3, humanhuman

TSL 2 BASIC

Gene TRAF3, Length 1,786 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-204ENST00000539721 UBR1Q8IWV7 1749 aa22.94■■□□□ 1.26
TRAF3-204ENST00000539721 MYO3AQ8NEV4 1616 aa22.93■■□□□ 1.26
TRAF3-204ENST00000539721 ZNF316A6NFI3 1004 aaPredicted RBP22.91■■□□□ 1.26
TRAF3-204ENST00000539721 NRXN1Q9ULB1 1477 aa22.91■■□□□ 1.26
TRAF3-204ENST00000539721 ADGRF5Q8IZF2 1346 aa22.9■■□□□ 1.26
TRAF3-204ENST00000539721 PTPRMP28827 1452 aa22.9■■□□□ 1.26
TRAF3-204ENST00000539721 KIAA1210Q9ULL0 1709 aa22.89■■□□□ 1.26
TRAF3-204ENST00000539721 ROCK2O75116 1388 aaKnown RBP22.89■■□□□ 1.25
TRAF3-204ENST00000539721 VGFO15240 615 aaPredicted RBP22.88■■□□□ 1.25
TRAF3-204ENST00000539721 NUTM2DQ5VT03 806 aaPredicted RBP22.86■■□□□ 1.25
TRAF3-204ENST00000539721 ZFYVE9O95405 1425 aa22.86■■□□□ 1.25
TRAF3-204ENST00000539721 RIMS2Q9UQ26 1411 aa22.85■■□□□ 1.25
TRAF3-204ENST00000539721 LAMC1P11047 1609 aa22.85■■□□□ 1.25
TRAF3-204ENST00000539721 CARD11Q9BXL7 1154 aa22.85■■□□□ 1.25
TRAF3-204ENST00000539721 PIK3C2GO75747 1445 aa22.85■■□□□ 1.25
TRAF3-204ENST00000539721 EIF4G2P78344 907 aaKnown RBP eCLIP22.84■■□□□ 1.256e-8■■■■□ 21.2
TRAF3-204ENST00000539721 SETD1BQ9UPS6 1966 aaKnown RBP22.84■■□□□ 1.25
TRAF3-204ENST00000539721 NBPF1Q3BBV0 1214 aa22.84■■□□□ 1.25
TRAF3-204ENST00000539721 CEP170BQ9Y4F5 1589 aaPredicted RBP22.84■■□□□ 1.25
TRAF3-204ENST00000539721 GPRASP1Q5JY77 1395 aa22.83■■□□□ 1.25
TRAF3-204ENST00000539721 ZNF142P52746 1687 aaPredicted RBP22.82■■□□□ 1.24
TRAF3-204ENST00000539721 HSPA5P11021 654 aaKnown RBP22.82■■□□□ 1.24
TRAF3-204ENST00000539721 HIRIP3Q9BW71 556 aaPredicted RBP22.81■■□□□ 1.24
TRAF3-204ENST00000539721 USP47Q96K76 1375 aa22.8■■□□□ 1.24
TRAF3-204ENST00000539721 TMEM2Q9UHN6 1383 aa22.8■■□□□ 1.24
TRAF3-204ENST00000539721 CFAP70Q5T0N1 1121 aa22.8■■□□□ 1.24
TRAF3-204ENST00000539721 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.8■■□□□ 1.24
TRAF3-204ENST00000539721 HDGFP51858 240 aaKnown RBP22.78■■□□□ 1.24
TRAF3-204ENST00000539721 SETBP1Q9Y6X0 1596 aa22.77■■□□□ 1.23
TRAF3-204ENST00000539721 THEMISQ8N1K5 641 aaPredicted RBP22.76■■□□□ 1.23
TRAF3-204ENST00000539721 C14orf93Q9H972 538 aaKnown RBP22.76■■□□□ 1.23
TRAF3-204ENST00000539721 SLIT1O75093 1534 aa22.76■■□□□ 1.23
TRAF3-204ENST00000539721 IQGAP1P46940 1657 aa22.76■■□□□ 1.23
TRAF3-204ENST00000539721 KDM4FA0A1W2PPD8 638 aa22.75■■□□□ 1.23
TRAF3-204ENST00000539721 ARHGAP23Q9P227 1491 aa22.74■■□□□ 1.23
TRAF3-204ENST00000539721 SENP3Q9H4L4 574 aaPredicted RBP22.73■■□□□ 1.23
TRAF3-204ENST00000539721 ADGRB1O14514 1584 aa22.71■■□□□ 1.23
TRAF3-204ENST00000539721 SCAF11Q99590 1463 aaKnown RBP22.71■■□□□ 1.23
TRAF3-204ENST00000539721 ALKQ9UM73 1620 aa22.71■■□□□ 1.23
TRAF3-204ENST00000539721 EID1Q9Y6B2 187 aa22.71■■□□□ 1.23
TRAF3-204ENST00000539721 NRXN3Q9Y4C0 1643 aa22.7■■□□□ 1.22
TRAF3-204ENST00000539721 TXNDC2Q86VQ3 553 aa22.69■■□□□ 1.22
TRAF3-204ENST00000539721 LTKP29376 864 aa22.68■■□□□ 1.22
TRAF3-204ENST00000539721 SETD1AO15047 1707 aaKnown RBP22.68■■□□□ 1.22
TRAF3-204ENST00000539721 ASXL1Q8IXJ9 1541 aa22.67■■□□□ 1.22
TRAF3-204ENST00000539721 ST20-MTHFSA0A0A6YYL1 179 aa22.67■■□□□ 1.22
TRAF3-204ENST00000539721 PLEKHG1Q9ULL1 1385 aa22.67■■□□□ 1.22
TRAF3-204ENST00000539721 TMEM132EQ6IEE7 984 aa22.66■■□□□ 1.22
TRAF3-204ENST00000539721 BCANQ96GW7 911 aa22.66■■□□□ 1.22
TRAF3-204ENST00000539721 POLR1AO95602 1720 aaPredicted RBP22.65■■□□□ 1.22
TRAF3-204ENST00000539721 EIF3AQ14152 1382 aaKnown RBP22.65■■□□□ 1.22
TRAF3-204ENST00000539721 ARHGEF28Q8N1W1 1705 aaKnown RBP22.6■■□□□ 1.21
TRAF3-204ENST00000539721 TRAK1Q9UPV9 953 aa22.6■■□□□ 1.21
TRAF3-204ENST00000539721 ADAMTS13Q76LX8 1427 aa22.59■■□□□ 1.21
TRAF3-204ENST00000539721 ANKLE2Q86XL3 938 aa22.59■■□□□ 1.21
TRAF3-204ENST00000539721 YTHDC2Q9H6S0 1430 aaKnown RBP22.58■■□□□ 1.21
TRAF3-204ENST00000539721 C11orf95C9JLR9 678 aaPredicted RBP22.57■■□□□ 1.2
TRAF3-204ENST00000539721 WASHC2AQ641Q2 1341 aa22.57■■□□□ 1.2
TRAF3-204ENST00000539721 STK26Q9P289 416 aa22.56■■□□□ 1.2
TRAF3-204ENST00000539721 DIP2AQ14689 1571 aa22.56■■□□□ 1.2
TRAF3-204ENST00000539721 CCDC7Q96M83 1385 aa22.56■■□□□ 1.2
TRAF3-204ENST00000539721 DIEXFQ68CQ4 756 aaKnown RBP22.55■■□□□ 1.2
TRAF3-204ENST00000539721 TESK2Q96S53 571 aa22.55■■□□□ 1.2
TRAF3-204ENST00000539721 QRICH2Q9H0J4 1663 aa22.55■■□□□ 1.2
TRAF3-204ENST00000539721 METP08581 1390 aa22.55■■□□□ 1.2
TRAF3-204ENST00000539721 MED14O60244 1454 aa22.55■■□□□ 1.2
TRAF3-204ENST00000539721 CENPJQ9HC77 1338 aaPredicted RBP22.54■■□□□ 1.2
TRAF3-204ENST00000539721 KIF7Q2M1P5 1343 aa22.53■■□□□ 1.2
TRAF3-204ENST00000539721 LRPPRCP42704 1394 aaKnown RBP22.53■■□□□ 1.2
TRAF3-204ENST00000539721 KNDC1Q76NI1 1749 aa22.53■■□□□ 1.2
TRAF3-204ENST00000539721 SLC26A8Q96RN1 970 aa22.53■■□□□ 1.2
TRAF3-204ENST00000539721 DLC1Q96QB1 1528 aa22.51■■□□□ 1.19
TRAF3-204ENST00000539721 TMF1P82094 1093 aa22.5■■□□□ 1.19
TRAF3-204ENST00000539721 DDX10Q13206 875 aaKnown RBP22.5■■□□□ 1.19
TRAF3-204ENST00000539721 TBX22Q9Y458 520 aa22.5■■□□□ 1.19
TRAF3-204ENST00000539721 ABCC11Q96J66 1382 aa22.49■■□□□ 1.19
TRAF3-204ENST00000539721 POLR3GLQ9BT43 218 aa22.49■■□□□ 1.19
TRAF3-204ENST00000539721 LMTK3Q96Q04 1460 aa22.49■■□□□ 1.19
TRAF3-204ENST00000539721 NPHP4O75161 1426 aaPredicted RBP22.49■■□□□ 1.19
TRAF3-204ENST00000539721 DISP3Q9P2K9 1392 aa22.49■■□□□ 1.19
TRAF3-204ENST00000539721 SBNO2Q9Y2G9 1366 aa22.48■■□□□ 1.19
TRAF3-204ENST00000539721 NCKAP5LQ9HCH0 1330 aa22.47■■□□□ 1.19
TRAF3-204ENST00000539721 SLC24A1O60721 1099 aa22.47■■□□□ 1.19
TRAF3-204ENST00000539721 CPS1P31327 1500 aa22.46■■□□□ 1.19
TRAF3-204ENST00000539721 TECPR2O15040 1411 aa22.46■■□□□ 1.19
TRAF3-204ENST00000539721 PRAM1Q96QH2 718 aa22.45■■□□□ 1.19
TRAF3-204ENST00000539721 POGKQ9P215 609 aa22.45■■□□□ 1.19
TRAF3-204ENST00000539721 HSPA2P54652 639 aa22.45■■□□□ 1.18
TRAF3-204ENST00000539721 PTPRUQ92729 1446 aa22.44■■□□□ 1.18
TRAF3-204ENST00000539721 SAFB2Q14151 953 aaKnown RBP eCLIP22.43■■□□□ 1.18
TRAF3-204ENST00000539721 PIK3R4Q99570 1358 aa22.42■■□□□ 1.18
TRAF3-204ENST00000539721 CDCA8Q53HL2 280 aa22.42■■□□□ 1.18
TRAF3-204ENST00000539721 FAM135BQ49AJ0 1406 aa22.41■■□□□ 1.18
TRAF3-204ENST00000539721 XRN1Q8IZH2 1706 aaKnown RBP22.41■■□□□ 1.18
TRAF3-204ENST00000539721 CHD2O14647 1828 aaKnown RBP22.4■■□□□ 1.18
TRAF3-204ENST00000539721 SIRT1Q96EB6 747 aa22.4■■□□□ 1.18
TRAF3-204ENST00000539721 AMOTL2Q9Y2J4 779 aa22.4■■□□□ 1.18
TRAF3-204ENST00000539721 PLEKHH1Q9ULM0 1364 aa22.39■■□□□ 1.18
TRAF3-204ENST00000539721 WAPLQ7Z5K2 1190 aa22.39■■□□□ 1.17
TRAF3-204ENST00000539721 ROBO2Q9HCK4 1378 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms