RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-216ENST00000538235 PCGF6Q9BYE7 350 aa19.42■□□□□ 0.7
CHFR-216ENST00000538235 CCDC144AA2RUR9 1427 aa19.41■□□□□ 0.7
CHFR-216ENST00000538235 NPHP4O75161 1426 aaPredicted RBP19.41■□□□□ 0.7
CHFR-216ENST00000538235 THEMISQ8N1K5 641 aaPredicted RBP19.4■□□□□ 0.7
CHFR-216ENST00000538235 LTBP4Q8N2S1 1624 aa19.38■□□□□ 0.69
CHFR-216ENST00000538235 CHGAP10645 457 aaKnown RBP19.37■□□□□ 0.69
CHFR-216ENST00000538235 NUTM2DQ5VT03 806 aaPredicted RBP19.37■□□□□ 0.69
CHFR-216ENST00000538235 ACIN1Q9UKV3 1341 aaKnown RBP19.36■□□□□ 0.69
CHFR-216ENST00000538235 SETBP1Q9Y6X0 1596 aa19.36■□□□□ 0.69
CHFR-216ENST00000538235 XIRP1Q702N8 1843 aaKnown RBP19.35■□□□□ 0.69
CHFR-216ENST00000538235 ADAMTS13Q76LX8 1427 aa19.34■□□□□ 0.69
CHFR-216ENST00000538235 SENP3Q9H4L4 574 aaPredicted RBP19.34■□□□□ 0.69
CHFR-216ENST00000538235 STAG3Q9UJ98 1225 aa19.34■□□□□ 0.69
CHFR-216ENST00000538235 TXNDC2Q86VQ3 553 aa19.33■□□□□ 0.68
CHFR-216ENST00000538235 CHD2O14647 1828 aaKnown RBP19.32■□□□□ 0.68
CHFR-216ENST00000538235 ANKLE2Q86XL3 938 aa19.32■□□□□ 0.68
CHFR-216ENST00000538235 NWD1Q149M9 1564 aa19.32■□□□□ 0.68
CHFR-216ENST00000538235 PLEKHG1Q9ULL1 1385 aa19.32■□□□□ 0.68
CHFR-216ENST00000538235 ASXL1Q8IXJ9 1541 aa19.31■□□□□ 0.68
CHFR-216ENST00000538235 ZNF335Q9H4Z2 1342 aaPredicted RBP19.29■□□□□ 0.68
CHFR-216ENST00000538235 XRN1Q8IZH2 1706 aaKnown RBP19.28■□□□□ 0.68
CHFR-216ENST00000538235 DIP2AQ14689 1571 aa19.28■□□□□ 0.68
CHFR-216ENST00000538235 NRXN1Q9ULB1 1477 aa19.28■□□□□ 0.68
CHFR-216ENST00000538235 MYOM2P54296 1465 aa19.27■□□□□ 0.67
CHFR-216ENST00000538235 ALKQ9UM73 1620 aa19.26■□□□□ 0.67
CHFR-216ENST00000538235 SIN3AQ96ST3 1273 aa19.26■□□□□ 0.67
CHFR-216ENST00000538235 RGL3Q3MIN7 710 aa19.25■□□□□ 0.67
CHFR-216ENST00000538235 ZNF326Q5BKZ1 582 aaKnown RBP19.25■□□□□ 0.67
CHFR-216ENST00000538235 PTPRUQ92729 1446 aa19.25■□□□□ 0.67
CHFR-216ENST00000538235 ADGRF5Q8IZF2 1346 aa19.25■□□□□ 0.67
CHFR-216ENST00000538235 SLC26A8Q96RN1 970 aa19.24■□□□□ 0.67
CHFR-216ENST00000538235 PIK3C2GO75747 1445 aa19.24■□□□□ 0.67
CHFR-216ENST00000538235 EID1Q9Y6B2 187 aa19.23■□□□□ 0.67
CHFR-216ENST00000538235 DMRT2Q9Y5R5 561 aa19.2■□□□□ 0.66
CHFR-216ENST00000538235 METP08581 1390 aa19.19■□□□□ 0.66
CHFR-216ENST00000538235 LAMC1P11047 1609 aa19.19■□□□□ 0.66
CHFR-216ENST00000538235 PPP1R15AO75807 674 aaPredicted RBP19.19■□□□□ 0.66
CHFR-216ENST00000538235 KNDC1Q76NI1 1749 aa19.18■□□□□ 0.66
CHFR-216ENST00000538235 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.18■□□□□ 0.66
CHFR-216ENST00000538235 LRRC7Q96NW7 1537 aa19.18■□□□□ 0.66
CHFR-216ENST00000538235 RPGRIP1LQ68CZ1 1315 aa19.18■□□□□ 0.66
CHFR-216ENST00000538235 ADGRB1O14514 1584 aa19.17■□□□□ 0.66
CHFR-216ENST00000538235 CPS1P31327 1500 aa19.16■□□□□ 0.66
CHFR-216ENST00000538235 NALCNQ8IZF0 1738 aa19.14■□□□□ 0.66
CHFR-216ENST00000538235 NKTRP30414 1462 aaKnown RBP19.14■□□□□ 0.65
CHFR-216ENST00000538235 TRPM1Q7Z4N2 1603 aa19.14■□□□□ 0.65
CHFR-216ENST00000538235 KIAA1210Q9ULL0 1709 aa19.14■□□□□ 0.65
CHFR-216ENST00000538235 TBX22Q9Y458 520 aa19.12■□□□□ 0.65
CHFR-216ENST00000538235 PRAG1Q86YV5 1406 aa19.11■□□□□ 0.65
CHFR-216ENST00000538235 VGFO15240 615 aaPredicted RBP19.1■□□□□ 0.65
CHFR-216ENST00000538235 NEUROD1Q13562 356 aa19.1■□□□□ 0.65
CHFR-216ENST00000538235 ARHGEF28Q8N1W1 1705 aaKnown RBP19.1■□□□□ 0.65
CHFR-216ENST00000538235 DCAF11Q8TEB1 546 aa19.09■□□□□ 0.65
CHFR-216ENST00000538235 L3MBTL2Q969R5 705 aa19.09■□□□□ 0.65
CHFR-216ENST00000538235 BCANQ96GW7 911 aa19.09■□□□□ 0.65
CHFR-216ENST00000538235 PIK3R4Q99570 1358 aa19.08■□□□□ 0.65
CHFR-216ENST00000538235 KCNA6P17658 529 aa19.08■□□□□ 0.64
CHFR-216ENST00000538235 HDGFP51858 240 aaKnown RBP19.08■□□□□ 0.64
CHFR-216ENST00000538235 RBM33Q96EV2 1170 aaKnown RBP19.08■□□□□ 0.64
CHFR-216ENST00000538235 KDM2AQ9Y2K7 1162 aa19.08■□□□□ 0.64
CHFR-216ENST00000538235 CFAP70Q5T0N1 1121 aa19.07■□□□□ 0.64
CHFR-216ENST00000538235 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.07■□□□□ 0.64
CHFR-216ENST00000538235 IQSEC2Q5JU85 1478 aa19.06■□□□□ 0.64
CHFR-216ENST00000538235 CERKQ8TCT0 537 aa19.06■□□□□ 0.64
CHFR-216ENST00000538235 ROBO2Q9HCK4 1378 aa19.05■□□□□ 0.64
CHFR-216ENST00000538235 TECPR2O15040 1411 aa19.04■□□□□ 0.64
CHFR-216ENST00000538235 TMEM132EQ6IEE7 984 aa19.04■□□□□ 0.64
CHFR-216ENST00000538235 TMEM94Q12767 1356 aa19.04■□□□□ 0.64
CHFR-216ENST00000538235 PTCH1Q13635 1447 aa19.03■□□□□ 0.64
CHFR-216ENST00000538235 C14orf93Q9H972 538 aaKnown RBP19.03■□□□□ 0.64
CHFR-216ENST00000538235 YTHDC2Q9H6S0 1430 aaKnown RBP19.02■□□□□ 0.64
CHFR-216ENST00000538235 AMOTL2Q9Y2J4 779 aa19.02■□□□□ 0.64
CHFR-216ENST00000538235 NBPF8Q3BBV2 869 aa19.01■□□□□ 0.63
CHFR-216ENST00000538235 PLEKHH1Q9ULM0 1364 aa19.01■□□□□ 0.63
CHFR-216ENST00000538235 LRPPRCP42704 1394 aaKnown RBP19■□□□□ 0.63
CHFR-216ENST00000538235 DLC1Q96QB1 1528 aa18.99■□□□□ 0.63
CHFR-216ENST00000538235 NBPF1Q3BBV0 1214 aa18.97■□□□□ 0.63
CHFR-216ENST00000538235 TONSLQ96HA7 1378 aa18.96■□□□□ 0.63
CHFR-216ENST00000538235 CLSPNQ9HAW4 1339 aa18.96■□□□□ 0.63
CHFR-216ENST00000538235 RALGAPBQ86X10 1494 aa18.96■□□□□ 0.63
CHFR-216ENST00000538235 CCER1Q8TC90 406 aaPredicted RBP18.95■□□□□ 0.62
CHFR-216ENST00000538235 ABCC11Q96J66 1382 aa18.94■□□□□ 0.62
CHFR-216ENST00000538235 RGPD8O14715 1765 aaPredicted RBP18.94■□□□□ 0.62
CHFR-216ENST00000538235 ADGRL3Q9HAR2 1447 aa18.94■□□□□ 0.62
CHFR-216ENST00000538235 PROSER2Q86WR7 435 aaPredicted RBP18.94■□□□□ 0.62
CHFR-216ENST00000538235 STK26Q9P289 416 aa18.94■□□□□ 0.62
CHFR-216ENST00000538235 QRICH2Q9H0J4 1663 aa18.94■□□□□ 0.62
CHFR-216ENST00000538235 FMN2Q9NZ56 1722 aa18.94■□□□□ 0.62
CHFR-216ENST00000538235 CDC42BPGQ6DT37 1551 aa18.93■□□□□ 0.62
CHFR-216ENST00000538235 ADGRB2O60241 1585 aa18.93■□□□□ 0.62
CHFR-216ENST00000538235 USP32Q8NFA0 1604 aa18.92■□□□□ 0.62
CHFR-216ENST00000538235 WAPLQ7Z5K2 1190 aa18.91■□□□□ 0.62
CHFR-216ENST00000538235 ROBO1Q9Y6N7 1651 aa18.91■□□□□ 0.62
CHFR-216ENST00000538235 STAC3Q96MF2 364 aa18.9■□□□□ 0.62
CHFR-216ENST00000538235 GPRASP1Q5JY77 1395 aa18.9■□□□□ 0.62
CHFR-216ENST00000538235 FAM135BQ49AJ0 1406 aa18.9■□□□□ 0.62
CHFR-216ENST00000538235 NCOA3Q9Y6Q9 1424 aa18.89■□□□□ 0.61
CHFR-216ENST00000538235 MST1RQ04912 1400 aa18.87■□□□□ 0.61
CHFR-216ENST00000538235 TRAK1Q9UPV9 953 aa18.86■□□□□ 0.61
CHFR-216ENST00000538235 DCCP43146 1447 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms