RNA–Protein interactions for RNA: ENST00000535689.5

SNHG1-202, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-202ENST00000535689 IL27Q8NEV9 243 aa6.53□□□□□ -1.36
SNHG1-202ENST00000535689 RNF166Q96A37 237 aaPredicted RBP6.53□□□□□ -1.36
SNHG1-202ENST00000535689 PCMTD1Q96MG8 357 aaPredicted RBP6.53□□□□□ -1.36
SNHG1-202ENST00000535689 ZBED2Q9BTP6 218 aa6.53□□□□□ -1.36
SNHG1-202ENST00000535689 ATP1B4Q9UN42 357 aaPredicted RBP6.53□□□□□ -1.36
SNHG1-202ENST00000535689 HRO43593 1189 aa6.52□□□□□ -1.37
SNHG1-202ENST00000535689 GRIPAP1Q4V328 841 aa6.52□□□□□ -1.37
SNHG1-202ENST00000535689 GPBP1L1Q9HC44 474 aaPredicted RBP6.52□□□□□ -1.37
SNHG1-202ENST00000535689 VPS9D1Q9Y2B5 631 aa6.52□□□□□ -1.37
SNHG1-202ENST00000535689 RCCD1A6NED2 376 aa6.51□□□□□ -1.37
SNHG1-202ENST00000535689 GOLGA8CPA6NN73 597 aa6.51□□□□□ -1.37
SNHG1-202ENST00000535689 SLF2Q8IX21 1173 aa6.51□□□□□ -1.37
SNHG1-202ENST00000535689 PRR14Q9BWN1 585 aa6.51□□□□□ -1.37
SNHG1-202ENST00000535689 NUTM1Q86Y26 1132 aa6.5□□□□□ -1.37
SNHG1-202ENST00000535689 EYA1Q99502 592 aa6.5□□□□□ -1.37
SNHG1-202ENST00000535689 FAM217BQ9NTX9 383 aaPredicted RBP6.5□□□□□ -1.37
SNHG1-202ENST00000535689 KIAA1468Q9P260 1216 aa6.5□□□□□ -1.37
SNHG1-202ENST00000535689 FAM98CQ17RN3 349 aaKnown RBP6.49□□□□□ -1.37
SNHG1-202ENST00000535689 TSKSQ9UJT2 592 aa6.49□□□□□ -1.37
SNHG1-202ENST00000535689 USP46P62068 366 aa6.48□□□□□ -1.37
SNHG1-202ENST00000535689 MRPL50Q8N5N7 158 aaKnown RBP6.48□□□□□ -1.37
SNHG1-202ENST00000535689 BEGAINQ9BUH8 593 aa6.48□□□□□ -1.37
SNHG1-202ENST00000535689 TMUB1Q9BVT8 246 aa6.48□□□□□ -1.37
SNHG1-202ENST00000535689 TMEM134Q9H6X4 195 aa6.48□□□□□ -1.37
SNHG1-202ENST00000535689 FLIIQ13045 1269 aa6.47□□□□□ -1.37
SNHG1-202ENST00000535689 SKIV2LQ15477 1246 aaKnown RBP6.47□□□□□ -1.37
SNHG1-202ENST00000535689 SH3D19Q5HYK7 790 aa6.47□□□□□ -1.37
SNHG1-202ENST00000535689 FAM117AQ9C073 453 aa6.47□□□□□ -1.37
SNHG1-202ENST00000535689 BHMG1C9JSJ3 638 aaPredicted RBP6.46□□□□□ -1.38
SNHG1-202ENST00000535689 C3orf80F5H4A9 247 aa6.46□□□□□ -1.38
SNHG1-202ENST00000535689 GJA5P36382 358 aa6.46□□□□□ -1.38
SNHG1-202ENST00000535689 KMT5BQ4FZB7 885 aa6.46□□□□□ -1.38
SNHG1-202ENST00000535689 RDH13Q8NBN7 331 aa6.46□□□□□ -1.38
SNHG1-202ENST00000535689 KCTD12Q96CX2 325 aaKnown RBP6.46□□□□□ -1.38
SNHG1-202ENST00000535689 FAM198AQ9UFP1 575 aa6.46□□□□□ -1.38
SNHG1-202ENST00000535689 DDX11L8A8MPP1 907 aa6.45□□□□□ -1.38
SNHG1-202ENST00000535689 APBB1O00213 710 aa6.45□□□□□ -1.38
SNHG1-202ENST00000535689 SEPT9Q9UHD8 586 aaPredicted RBP6.45□□□□□ -1.38
SNHG1-202ENST00000535689 SMAPO00193 183 aa6.44□□□□□ -1.38
SNHG1-202ENST00000535689 PRM3Q9NNZ6 103 aa6.44□□□□□ -1.38
SNHG1-202ENST00000535689 MS4A1P11836 297 aa6.43□□□□□ -1.38
SNHG1-202ENST00000535689 CD46P15529 392 aa6.43□□□□□ -1.38
SNHG1-202ENST00000535689 TUSC1Q2TAM9 212 aa6.43□□□□□ -1.38
SNHG1-202ENST00000535689 FAM161AQ3B820 660 aa6.43□□□□□ -1.38
SNHG1-202ENST00000535689 C14orf37Q86TY3 774 aa6.43□□□□□ -1.38
SNHG1-202ENST00000535689 ANKK1Q8NFD2 765 aa6.43□□□□□ -1.38
SNHG1-202ENST00000535689 LRCH3Q96II8 777 aa6.43□□□□□ -1.38
SNHG1-202ENST00000535689 PHOX2BQ99453 314 aa6.42□□□□□ -1.38
SNHG1-202ENST00000535689 KDM4AO75164 1064 aa6.41□□□□□ -1.38
SNHG1-202ENST00000535689 CLK2P49760 499 aaKnown RBP6.41□□□□□ -1.38
SNHG1-202ENST00000535689 PTPN5P54829 565 aa6.41□□□□□ -1.38
SNHG1-202ENST00000535689 TBC1D2Q9BYX2 928 aa6.41□□□□□ -1.38
SNHG1-202ENST00000535689 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.41□□□□□ -1.38
SNHG1-202ENST00000535689 PLEKHG3A1L390 1219 aa6.4□□□□□ -1.38
SNHG1-202ENST00000535689 SPDYE5A6NIY4 337 aa6.4□□□□□ -1.38
SNHG1-202ENST00000535689 TMEM259Q4ZIN3 620 aa6.4□□□□□ -1.38
SNHG1-202ENST00000535689 SWT1Q5T5J6 900 aaKnown RBP6.4□□□□□ -1.38
SNHG1-202ENST00000535689 NYAP1Q6ZVC0 841 aa6.4□□□□□ -1.38
SNHG1-202ENST00000535689 ZFRQ96KR1 1074 aaKnown RBP6.4□□□□□ -1.38
SNHG1-202ENST00000535689 REPIN1Q9BWE0 567 aaKnown RBP6.4□□□□□ -1.38
SNHG1-202ENST00000535689 GCGRP47871 477 aa6.39□□□□□ -1.39
SNHG1-202ENST00000535689 BCAMP50895 628 aa6.39□□□□□ -1.39
SNHG1-202ENST00000535689 PPP4CP60510 307 aa6.39□□□□□ -1.39
SNHG1-202ENST00000535689 WWC1Q8IX03 1113 aa6.39□□□□□ -1.39
SNHG1-202ENST00000535689 WNT2BQ93097 391 aa6.39□□□□□ -1.39
SNHG1-202ENST00000535689 CCDC180Q9P1Z9 1646 aa6.39□□□□□ -1.39
SNHG1-202ENST00000535689 RNF40O75150 1001 aa6.38□□□□□ -1.39
SNHG1-202ENST00000535689 PRPF38BQ5VTL8 546 aaKnown RBP6.38□□□□□ -1.39
SNHG1-202ENST00000535689 THSD4Q6ZMP0 1018 aa6.38□□□□□ -1.39
SNHG1-202ENST00000535689 RIC3Q7Z5B4 369 aa6.38□□□□□ -1.39
SNHG1-202ENST00000535689 SPTLC1O15269 473 aa6.37□□□□□ -1.39
SNHG1-202ENST00000535689 ATP6V1AP38606 617 aa6.37□□□□□ -1.39
SNHG1-202ENST00000535689 Q3C1V9 767 aa6.37□□□□□ -1.39
SNHG1-202ENST00000535689 MYSM1Q5VVJ2 828 aa6.37□□□□□ -1.39
SNHG1-202ENST00000535689 SAMD7Q7Z3H4 446 aa6.37□□□□□ -1.39
SNHG1-202ENST00000535689 BANK1Q8NDB2 785 aa6.37□□□□□ -1.39
SNHG1-202ENST00000535689 SPIRE2Q8WWL2 714 aa6.37□□□□□ -1.39
SNHG1-202ENST00000535689 NUTM2BA6NNL0 878 aaPredicted RBP6.36□□□□□ -1.39
SNHG1-202ENST00000535689 NUTM2EB1AL46 878 aaPredicted RBP6.36□□□□□ -1.39
SNHG1-202ENST00000535689 RAD21O60216 631 aa6.36□□□□□ -1.39
SNHG1-202ENST00000535689 NUTM2DQ5VT03 806 aaPredicted RBP6.36□□□□□ -1.39
SNHG1-202ENST00000535689 NUTM2AQ8IVF1 878 aaPredicted RBP6.36□□□□□ -1.39
SNHG1-202ENST00000535689 ZBTB3Q9H5J0 574 aa6.36□□□□□ -1.39
SNHG1-202ENST00000535689 POLR3EQ9NVU0 708 aa6.36□□□□□ -1.39
SNHG1-202ENST00000535689 PNMA1Q8ND90 353 aa6.35□□□□□ -1.39
SNHG1-202ENST00000535689 TSR3Q9UJK0 312 aaKnown RBP6.35□□□□□ -1.39
SNHG1-202ENST00000535689 SOWAHBA6NEL2 793 aa6.34□□□□□ -1.39
SNHG1-202ENST00000535689 FDX1P10109 184 aa6.34□□□□□ -1.39
SNHG1-202ENST00000535689 RSBN1LQ6PCB5 846 aaPredicted RBP6.34□□□□□ -1.39
SNHG1-202ENST00000535689 HELBQ8NG08 1087 aaPredicted RBP6.34□□□□□ -1.39
SNHG1-202ENST00000535689 NLRP7Q8WX94 980 aa6.34□□□□□ -1.39
SNHG1-202ENST00000535689 HCSTQ9UBK5 93 aa6.34□□□□□ -1.39
SNHG1-202ENST00000535689 SOCS7O14512 581 aa6.33□□□□□ -1.4
SNHG1-202ENST00000535689 ACTN4O43707 911 aaKnown RBP6.33□□□□□ -1.4
SNHG1-202ENST00000535689 CFHP08603 1231 aa6.33□□□□□ -1.4
SNHG1-202ENST00000535689 PPP2R2DQ66LE6 453 aa6.33□□□□□ -1.4
SNHG1-202ENST00000535689 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.33□□□□□ -1.4
SNHG1-202ENST00000535689 HOXA2O43364 376 aa6.32□□□□□ -1.4
SNHG1-202ENST00000535689 NR1I2O75469 434 aa6.32□□□□□ -1.4
SNHG1-202ENST00000535689 UBTFP17480 764 aaKnown RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms