RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 NUP155O75694 1391 aa20.08■□□□□ 0.81
CLSTN3-205ENST00000535452 MSH6P52701 1360 aa20.08■□□□□ 0.8
CLSTN3-205ENST00000535452 TMEM94Q12767 1356 aa20.07■□□□□ 0.8
CLSTN3-205ENST00000535452 GCC2Q8IWJ2 1684 aa20.07■□□□□ 0.8
CLSTN3-205ENST00000535452 UNC13BO14795 1591 aa20.06■□□□□ 0.8
CLSTN3-205ENST00000535452 PPARGC1BQ86YN6 1023 aaKnown RBP20.06■□□□□ 0.8
CLSTN3-205ENST00000535452 STRCP1A6NGW2 1772 aa20.06■□□□□ 0.8
CLSTN3-205ENST00000535452 MED1Q15648 1581 aaPredicted RBP20.05■□□□□ 0.8
CLSTN3-205ENST00000535452 RIMS2Q9UQ26 1411 aa20.05■□□□□ 0.8
CLSTN3-205ENST00000535452 NKTRP30414 1462 aaKnown RBP20.05■□□□□ 0.8
CLSTN3-205ENST00000535452 PLEKHG1Q9ULL1 1385 aa20.04■□□□□ 0.8
CLSTN3-205ENST00000535452 ZNF326Q5BKZ1 582 aaKnown RBP20.01■□□□□ 0.79
CLSTN3-205ENST00000535452 IQGAP3Q86VI3 1631 aa19.99■□□□□ 0.79
CLSTN3-205ENST00000535452 TBX22Q9Y458 520 aa19.99■□□□□ 0.79
CLSTN3-205ENST00000535452 FAM135BQ49AJ0 1406 aa19.99■□□□□ 0.79
CLSTN3-205ENST00000535452 ZFYVE9O95405 1425 aa19.96■□□□□ 0.79
CLSTN3-205ENST00000535452 RBM33Q96EV2 1170 aaKnown RBP19.96■□□□□ 0.79
CLSTN3-205ENST00000535452 TMEM131LA2VDJ0 1609 aa19.95■□□□□ 0.78
CLSTN3-205ENST00000535452 ALKQ9UM73 1620 aa19.95■□□□□ 0.78
CLSTN3-205ENST00000535452 E9PCH4 1651 aa19.95■□□□□ 0.78
CLSTN3-205ENST00000535452 ATF3P18847 181 aa19.95■□□□□ 0.78
CLSTN3-205ENST00000535452 NUTM2DQ5VT03 806 aaPredicted RBP19.95■□□□□ 0.78
CLSTN3-205ENST00000535452 NWD1Q149M9 1564 aa19.95■□□□□ 0.78
CLSTN3-205ENST00000535452 PIK3R4Q99570 1358 aa19.94■□□□□ 0.78
CLSTN3-205ENST00000535452 CADPS2Q86UW7 1296 aa19.93■□□□□ 0.78
CLSTN3-205ENST00000535452 SLAIN2Q9P270 581 aa19.93■□□□□ 0.78
CLSTN3-205ENST00000535452 DIP2AQ14689 1571 aa19.92■□□□□ 0.78
CLSTN3-205ENST00000535452 TRIM52Q96A61 297 aa19.92■□□□□ 0.78
CLSTN3-205ENST00000535452 NCOA3Q9Y6Q9 1424 aa19.92■□□□□ 0.78
CLSTN3-205ENST00000535452 TRPM2O94759 1503 aa19.9■□□□□ 0.78
CLSTN3-205ENST00000535452 MYO5BQ9ULV0 1848 aa19.9■□□□□ 0.78
CLSTN3-205ENST00000535452 XIRP1Q702N8 1843 aaKnown RBP19.89■□□□□ 0.77
CLSTN3-205ENST00000535452 ROBO1Q9Y6N7 1651 aa19.88■□□□□ 0.77
CLSTN3-205ENST00000535452 C19orf44Q9H6X5 657 aa19.88■□□□□ 0.77
CLSTN3-205ENST00000535452 AMOTL2Q9Y2J4 779 aa19.87■□□□□ 0.77
CLSTN3-205ENST00000535452 RRBP1Q9P2E9 1410 aaKnown RBP19.86■□□□□ 0.77
CLSTN3-205ENST00000535452 CHD2O14647 1828 aaKnown RBP19.85■□□□□ 0.77
CLSTN3-205ENST00000535452 SPHKAPQ2M3C7 1700 aa19.85■□□□□ 0.77
CLSTN3-205ENST00000535452 MEX3CQ5U5Q3 659 aaKnown RBP19.84■□□□□ 0.77
CLSTN3-205ENST00000535452 JCADQ9P266 1359 aa19.83■□□□□ 0.77
CLSTN3-205ENST00000535452 ADAMTS13Q76LX8 1427 aa19.83■□□□□ 0.76
CLSTN3-205ENST00000535452 SLC4A1APQ9BWU0 796 aaKnown RBP19.82■□□□□ 0.76
CLSTN3-205ENST00000535452 VGFO15240 615 aaPredicted RBP19.81■□□□□ 0.76
CLSTN3-205ENST00000535452 PHLPP1O60346 1717 aa19.79■□□□□ 0.76
CLSTN3-205ENST00000535452 NAIPQ13075 1403 aa19.79■□□□□ 0.76
CLSTN3-205ENST00000535452 SPATA31A6Q5VVP1 1343 aa19.76■□□□□ 0.75
CLSTN3-205ENST00000535452 ACIN1Q9UKV3 1341 aaKnown RBP19.76■□□□□ 0.75
CLSTN3-205ENST00000535452 HFM1A2PYH4 1435 aa19.76■□□□□ 0.75
CLSTN3-205ENST00000535452 DCCP43146 1447 aa19.76■□□□□ 0.75
CLSTN3-205ENST00000535452 SETBP1Q9Y6X0 1596 aa19.75■□□□□ 0.75
CLSTN3-205ENST00000535452 KIF1BO60333 1816 aa19.75■□□□□ 0.75
CLSTN3-205ENST00000535452 RPGRIP1LQ68CZ1 1315 aa19.75■□□□□ 0.75
CLSTN3-205ENST00000535452 ZNF772Q68DY9 489 aaPredicted RBP19.72■□□□□ 0.75
CLSTN3-205ENST00000535452 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.72■□□□□ 0.75
CLSTN3-205ENST00000535452 CLTCL1P53675 1640 aa19.71■□□□□ 0.75
CLSTN3-205ENST00000535452 PTPRUQ92729 1446 aa19.68■□□□□ 0.74
CLSTN3-205ENST00000535452 BRINP3Q76B58 766 aa19.68■□□□□ 0.74
CLSTN3-205ENST00000535452 LRRC59Q96AG4 307 aaKnown RBP19.68■□□□□ 0.74
CLSTN3-205ENST00000535452 RGS17Q9UGC6 210 aaPredicted RBP19.68■□□□□ 0.74
CLSTN3-205ENST00000535452 METP08581 1390 aa19.68■□□□□ 0.74
CLSTN3-205ENST00000535452 NEXMIFQ5QGS0 1516 aa19.67■□□□□ 0.74
CLSTN3-205ENST00000535452 CCDC144AA2RUR9 1427 aa19.67■□□□□ 0.74
CLSTN3-205ENST00000535452 AHDC1Q5TGY3 1603 aaPredicted RBP19.66■□□□□ 0.74
CLSTN3-205ENST00000535452 NUTM2BA6NNL0 878 aaPredicted RBP19.66■□□□□ 0.74
CLSTN3-205ENST00000535452 NUTM2EB1AL46 878 aaPredicted RBP19.66■□□□□ 0.74
CLSTN3-205ENST00000535452 NUTM2AQ8IVF1 878 aaPredicted RBP19.66■□□□□ 0.74
CLSTN3-205ENST00000535452 ADGRL3Q9HAR2 1447 aa19.66■□□□□ 0.74
CLSTN3-205ENST00000535452 XRN1Q8IZH2 1706 aaKnown RBP19.65■□□□□ 0.74
CLSTN3-205ENST00000535452 COL16A1Q07092 1604 aaPredicted RBP19.65■□□□□ 0.74
CLSTN3-205ENST00000535452 POTEAQ6S8J7 498 aa19.64■□□□□ 0.73
CLSTN3-205ENST00000535452 NRXN3Q9Y4C0 1643 aa19.64■□□□□ 0.73
CLSTN3-205ENST00000535452 ASXL1Q8IXJ9 1541 aa19.62■□□□□ 0.73
CLSTN3-205ENST00000535452 RGL3Q3MIN7 710 aa19.61■□□□□ 0.73
CLSTN3-205ENST00000535452 MST1RQ04912 1400 aa19.6■□□□□ 0.73
CLSTN3-205ENST00000535452 PTCH1Q13635 1447 aa19.6■□□□□ 0.73
CLSTN3-205ENST00000535452 MPHOSPH9Q99550 1183 aa19.59■□□□□ 0.73
CLSTN3-205ENST00000535452 SHPRHQ149N8 1683 aa19.59■□□□□ 0.73
CLSTN3-205ENST00000535452 ANKRD30BQ9BXX2 1392 aa19.58■□□□□ 0.73
CLSTN3-205ENST00000535452 RXRBP28702 533 aa19.57■□□□□ 0.72
CLSTN3-205ENST00000535452 FOXD1Q16676 465 aa19.57■□□□□ 0.72
CLSTN3-205ENST00000535452 SETD5Q9C0A6 1442 aa19.57■□□□□ 0.72
CLSTN3-205ENST00000535452 C8orf37Q96NL8 207 aa19.54■□□□□ 0.72
CLSTN3-205ENST00000535452 STK26Q9P289 416 aa19.53■□□□□ 0.72
CLSTN3-205ENST00000535452 LRPPRCP42704 1394 aaKnown RBP19.53■□□□□ 0.72
CLSTN3-205ENST00000535452 C1orf167Q5SNV9 1468 aa19.53■□□□□ 0.72
CLSTN3-205ENST00000535452 LRP6O75581 1613 aa19.52■□□□□ 0.72
CLSTN3-205ENST00000535452 NALCNQ8IZF0 1738 aa19.52■□□□□ 0.72
CLSTN3-205ENST00000535452 ROBO2Q9HCK4 1378 aa19.52■□□□□ 0.72
CLSTN3-205ENST00000535452 AFF2P51816 1311 aa19.51■□□□□ 0.71
CLSTN3-205ENST00000535452 ESCO1Q5FWF5 840 aa19.51■□□□□ 0.71
CLSTN3-205ENST00000535452 NGLY1Q96IV0 654 aa19.51■□□□□ 0.71
CLSTN3-205ENST00000535452 PPLO60437 1756 aa19.51■□□□□ 0.71
CLSTN3-205ENST00000535452 NHSL1Q5SYE7 1610 aa19.51■□□□□ 0.71
CLSTN3-205ENST00000535452 NPHP3Q7Z494 1330 aa19.51■□□□□ 0.71
CLSTN3-205ENST00000535452 ADAMTS2O95450 1211 aa19.49■□□□□ 0.71
CLSTN3-205ENST00000535452 PNPLA6Q8IY17 1366 aa19.48■□□□□ 0.71
CLSTN3-205ENST00000535452 DDX17Q92841 729 aaKnown RBP19.48■□□□□ 0.71
CLSTN3-205ENST00000535452 PRAG1Q86YV5 1406 aa19.48■□□□□ 0.71
CLSTN3-205ENST00000535452 ADGRF5Q8IZF2 1346 aa19.48■□□□□ 0.71
CLSTN3-205ENST00000535452 ORAI2Q96SN7 254 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms