RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 CHD2O14647 1828 aaKnown RBP24.47■■□□□ 1.51
CHMP4A-207ENST00000533523 NKTRP30414 1462 aaKnown RBP24.47■■□□□ 1.51
CHMP4A-207ENST00000533523 GCC2Q8IWJ2 1684 aa24.46■■□□□ 1.51
CHMP4A-207ENST00000533523 NOS1P29475 1434 aa24.45■■□□□ 1.51
CHMP4A-207ENST00000533523 SLC26A8Q96RN1 970 aa24.45■■□□□ 1.5
CHMP4A-207ENST00000533523 KCNA6P17658 529 aa24.44■■□□□ 1.5
CHMP4A-207ENST00000533523 IDI1Q13907 227 aa24.44■■□□□ 1.5
CHMP4A-207ENST00000533523 FAM50AQ14320 339 aaKnown RBP24.41■■□□□ 1.5
CHMP4A-207ENST00000533523 RPRD2Q5VT52 1461 aaKnown RBP24.39■■□□□ 1.5
CHMP4A-207ENST00000533523 ANKRD50Q9ULJ7 1429 aa24.39■■□□□ 1.5
CHMP4A-207ENST00000533523 PROSER2Q86WR7 435 aaPredicted RBP24.38■■□□□ 1.49
CHMP4A-207ENST00000533523 UNC13BO14795 1591 aa24.37■■□□□ 1.49
CHMP4A-207ENST00000533523 SHPRHQ149N8 1683 aa24.37■■□□□ 1.49
CHMP4A-207ENST00000533523 ZFYVE9O95405 1425 aa24.37■■□□□ 1.49
CHMP4A-207ENST00000533523 JCADQ9P266 1359 aa24.36■■□□□ 1.49
CHMP4A-207ENST00000533523 DIP2AQ14689 1571 aa24.36■■□□□ 1.49
CHMP4A-207ENST00000533523 BCANQ96GW7 911 aa24.35■■□□□ 1.49
CHMP4A-207ENST00000533523 UPF1Q92900 1129 aaKnown RBP eCLIP24.34■■□□□ 1.49
CHMP4A-207ENST00000533523 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.34■■□□□ 1.49
CHMP4A-207ENST00000533523 TMEM131LA2VDJ0 1609 aa24.34■■□□□ 1.49
CHMP4A-207ENST00000533523 AHDC1Q5TGY3 1603 aaPredicted RBP24.34■■□□□ 1.49
CHMP4A-207ENST00000533523 SLC52A1Q9NWF4 448 aa24.33■■□□□ 1.49
CHMP4A-207ENST00000533523 E9PCH4 1651 aa24.32■■□□□ 1.48
CHMP4A-207ENST00000533523 SLAIN2Q9P270 581 aa24.32■■□□□ 1.48
CHMP4A-207ENST00000533523 MSH6P52701 1360 aa24.3■■□□□ 1.48
CHMP4A-207ENST00000533523 RIMS2Q9UQ26 1411 aa24.3■■□□□ 1.48
CHMP4A-207ENST00000533523 PPP1R15AO75807 674 aaPredicted RBP24.29■■□□□ 1.48
CHMP4A-207ENST00000533523 PLEKHG1Q9ULL1 1385 aa24.29■■□□□ 1.48
CHMP4A-207ENST00000533523 IQGAP3Q86VI3 1631 aa24.28■■□□□ 1.48
CHMP4A-207ENST00000533523 ADAMTS13Q76LX8 1427 aa24.24■■□□□ 1.47
CHMP4A-207ENST00000533523 TRIM52Q96A61 297 aa24.23■■□□□ 1.47
CHMP4A-207ENST00000533523 EP400Q96L91 3159 aa24.23■■□□□ 1.47
CHMP4A-207ENST00000533523 CHGAP10645 457 aaKnown RBP24.22■■□□□ 1.47
CHMP4A-207ENST00000533523 NHSL1Q5SYE7 1610 aa24.19■■□□□ 1.46
CHMP4A-207ENST00000533523 ROCK1Q13464 1354 aa24.18■■□□□ 1.46
CHMP4A-207ENST00000533523 SPATA31A6Q5VVP1 1343 aa24.18■■□□□ 1.46
CHMP4A-207ENST00000533523 HDGFP51858 240 aaKnown RBP24.18■■□□□ 1.46
CHMP4A-207ENST00000533523 PTPRUQ92729 1446 aa24.18■■□□□ 1.46
CHMP4A-207ENST00000533523 NRXN3Q9Y4C0 1643 aa24.17■■□□□ 1.46
CHMP4A-207ENST00000533523 SPHKAPQ2M3C7 1700 aa24.16■■□□□ 1.46
CHMP4A-207ENST00000533523 NUTM2DQ5VT03 806 aaPredicted RBP24.16■■□□□ 1.46
CHMP4A-207ENST00000533523 CDK12Q9NYV4 1490 aaPredicted RBP24.15■■□□□ 1.46
CHMP4A-207ENST00000533523 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.15■■□□□ 1.46
CHMP4A-207ENST00000533523 XRN1Q8IZH2 1706 aaKnown RBP24.15■■□□□ 1.46
CHMP4A-207ENST00000533523 TRPM2O94759 1503 aa24.15■■□□□ 1.46
CHMP4A-207ENST00000533523 RGS12O14924 1447 aa24.14■■□□□ 1.45
CHMP4A-207ENST00000533523 C14orf37Q86TY3 774 aa24.14■■□□□ 1.45
CHMP4A-207ENST00000533523 NCOA3Q9Y6Q9 1424 aa24.14■■□□□ 1.45
CHMP4A-207ENST00000533523 ASXL1Q8IXJ9 1541 aa24.12■■□□□ 1.45
CHMP4A-207ENST00000533523 TBX22Q9Y458 520 aa24.12■■□□□ 1.45
CHMP4A-207ENST00000533523 NUP155O75694 1391 aa24.11■■□□□ 1.45
CHMP4A-207ENST00000533523 ITGAEP38570 1179 aa24.1■■□□□ 1.45
CHMP4A-207ENST00000533523 ZNF772Q68DY9 489 aaPredicted RBP24.1■■□□□ 1.45
CHMP4A-207ENST00000533523 BRINP3Q76B58 766 aa24.09■■□□□ 1.45
CHMP4A-207ENST00000533523 PIK3R4Q99570 1358 aa24.07■■□□□ 1.44
CHMP4A-207ENST00000533523 MEX3CQ5U5Q3 659 aaKnown RBP24.07■■□□□ 1.44
CHMP4A-207ENST00000533523 AFF2P51816 1311 aa24.06■■□□□ 1.44
CHMP4A-207ENST00000533523 NALCNQ8IZF0 1738 aa24.05■■□□□ 1.44
CHMP4A-207ENST00000533523 MST1RQ04912 1400 aa24.05■■□□□ 1.44
CHMP4A-207ENST00000533523 SETD5Q9C0A6 1442 aa24.04■■□□□ 1.44
CHMP4A-207ENST00000533523 RXRBP28702 533 aa24.04■■□□□ 1.44
CHMP4A-207ENST00000533523 SETBP1Q9Y6X0 1596 aa24.03■■□□□ 1.44
CHMP4A-207ENST00000533523 ATF3P18847 181 aa24.03■■□□□ 1.44
CHMP4A-207ENST00000533523 NUTM2BA6NNL0 878 aaPredicted RBP24.02■■□□□ 1.44
CHMP4A-207ENST00000533523 NUTM2EB1AL46 878 aaPredicted RBP24.02■■□□□ 1.44
CHMP4A-207ENST00000533523 CADPS2Q86UW7 1296 aa24.02■■□□□ 1.44
CHMP4A-207ENST00000533523 NUTM2AQ8IVF1 878 aaPredicted RBP24.02■■□□□ 1.44
CHMP4A-207ENST00000533523 C19orf44Q9H6X5 657 aa24.01■■□□□ 1.43
CHMP4A-207ENST00000533523 KIF1BO60333 1816 aa24■■□□□ 1.43
CHMP4A-207ENST00000533523 CLTCL1P53675 1640 aa23.99■■□□□ 1.43
CHMP4A-207ENST00000533523 PPARGC1BQ86YN6 1023 aaKnown RBP23.99■■□□□ 1.43
CHMP4A-207ENST00000533523 DDX17Q92841 729 aaKnown RBP23.99■■□□□ 1.43
CHMP4A-207ENST00000533523 AMOTL2Q9Y2J4 779 aa23.99■■□□□ 1.43
CHMP4A-207ENST00000533523 DCCP43146 1447 aa23.99■■□□□ 1.43
CHMP4A-207ENST00000533523 LAMC1P11047 1609 aa23.97■■□□□ 1.43
CHMP4A-207ENST00000533523 PNPLA6Q8IY17 1366 aa23.97■■□□□ 1.43
CHMP4A-207ENST00000533523 ZNF326Q5BKZ1 582 aaKnown RBP23.96■■□□□ 1.43
CHMP4A-207ENST00000533523 NEXMIFQ5QGS0 1516 aa23.94■■□□□ 1.42
CHMP4A-207ENST00000533523 METP08581 1390 aa23.91■■□□□ 1.42
CHMP4A-207ENST00000533523 C8orf37Q96NL8 207 aa23.88■■□□□ 1.41
CHMP4A-207ENST00000533523 ADGRL3Q9HAR2 1447 aa23.87■■□□□ 1.41
CHMP4A-207ENST00000533523 QTRT2Q9H974 415 aaKnown RBP23.87■■□□□ 1.41
CHMP4A-207ENST00000533523 RBM6P78332 1123 aaKnown RBP23.86■■□□□ 1.41
CHMP4A-207ENST00000533523 COL22A1Q8NFW1 1626 aaPredicted RBP23.84■■□□□ 1.41
CHMP4A-207ENST00000533523 NAIPQ13075 1403 aa23.83■■□□□ 1.4
CHMP4A-207ENST00000533523 RRBP1Q9P2E9 1410 aaKnown RBP23.83■■□□□ 1.4
CHMP4A-207ENST00000533523 C1orf167Q5SNV9 1468 aa23.81■■□□□ 1.4
CHMP4A-207ENST00000533523 PPLO60437 1756 aa23.8■■□□□ 1.4
CHMP4A-207ENST00000533523 MARF1Q9Y4F3 1742 aaKnown RBP23.8■■□□□ 1.4
CHMP4A-207ENST00000533523 ATRNO75882 1429 aa23.79■■□□□ 1.4
CHMP4A-207ENST00000533523 LRRC59Q96AG4 307 aaKnown RBP23.79■■□□□ 1.4
CHMP4A-207ENST00000533523 PTCH1Q13635 1447 aa23.78■■□□□ 1.4
CHMP4A-207ENST00000533523 ADAMTS2O95450 1211 aa23.78■■□□□ 1.4
CHMP4A-207ENST00000533523 ATAD2Q6PL18 1390 aa23.76■■□□□ 1.39
CHMP4A-207ENST00000533523 MYOM2P54296 1465 aa23.74■■□□□ 1.39
CHMP4A-207ENST00000533523 SOS2Q07890 1332 aaPredicted RBP23.73■■□□□ 1.39
CHMP4A-207ENST00000533523 HFM1A2PYH4 1435 aa23.72■■□□□ 1.39
CHMP4A-207ENST00000533523 BCL9LQ86UU0 1499 aa23.72■■□□□ 1.39
CHMP4A-207ENST00000533523 BRWD3Q6RI45 1802 aa23.72■■□□□ 1.39
CHMP4A-207ENST00000533523 ROBO2Q9HCK4 1378 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms