RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 MYO3AQ8NEV4 1616 aa22.71■■□□□ 1.23
TRIM3-213ENST00000533309 KIAA1210Q9ULL0 1709 aa22.71■■□□□ 1.23
TRIM3-213ENST00000533309 ZNF316A6NFI3 1004 aaPredicted RBP22.7■■□□□ 1.22
TRIM3-213ENST00000533309 ADGRF5Q8IZF2 1346 aa22.69■■□□□ 1.22
TRIM3-213ENST00000533309 LAMC1P11047 1609 aa22.69■■□□□ 1.22
TRIM3-213ENST00000533309 GPRASP1Q5JY77 1395 aa22.66■■□□□ 1.22
TRIM3-213ENST00000533309 PIK3C2GO75747 1445 aa22.66■■□□□ 1.22
TRIM3-213ENST00000533309 ZFYVE9O95405 1425 aa22.66■■□□□ 1.22
TRIM3-213ENST00000533309 PLPPR3Q6T4P5 718 aa22.65■■□□□ 1.22
TRIM3-213ENST00000533309 PTPRMP28827 1452 aa22.65■■□□□ 1.22
TRIM3-213ENST00000533309 SETD1BQ9UPS6 1966 aaKnown RBP22.64■■□□□ 1.22
TRIM3-213ENST00000533309 ROCK2O75116 1388 aaKnown RBP22.64■■□□□ 1.22
TRIM3-213ENST00000533309 STAG3Q9UJ98 1225 aa22.64■■□□□ 1.21
TRIM3-213ENST00000533309 NBPF1Q3BBV0 1214 aa22.63■■□□□ 1.21
TRIM3-213ENST00000533309 ZNF142P52746 1687 aaPredicted RBP22.62■■□□□ 1.21
TRIM3-213ENST00000533309 CEP170BQ9Y4F5 1589 aaPredicted RBP22.61■■□□□ 1.21
TRIM3-213ENST00000533309 RIMS2Q9UQ26 1411 aa22.61■■□□□ 1.21
TRIM3-213ENST00000533309 VGFO15240 615 aaPredicted RBP22.6■■□□□ 1.21
TRIM3-213ENST00000533309 HSPA5P11021 654 aaKnown RBP22.6■■□□□ 1.21
TRIM3-213ENST00000533309 EIF4G2P78344 907 aaKnown RBP eCLIP22.6■■□□□ 1.21
TRIM3-213ENST00000533309 NUTM2DQ5VT03 806 aaPredicted RBP22.6■■□□□ 1.21
TRIM3-213ENST00000533309 IQGAP1P46940 1657 aa22.59■■□□□ 1.21
TRIM3-213ENST00000533309 USP47Q96K76 1375 aa22.59■■□□□ 1.21
TRIM3-213ENST00000533309 HIRIP3Q9BW71 556 aaPredicted RBP22.59■■□□□ 1.21
TRIM3-213ENST00000533309 CARD11Q9BXL7 1154 aa22.59■■□□□ 1.21
TRIM3-213ENST00000533309 SETBP1Q9Y6X0 1596 aa22.57■■□□□ 1.2
TRIM3-213ENST00000533309 TMEM2Q9UHN6 1383 aa22.56■■□□□ 1.2
TRIM3-213ENST00000533309 CFAP70Q5T0N1 1121 aa22.56■■□□□ 1.2
TRIM3-213ENST00000533309 ADGRB1O14514 1584 aa22.55■■□□□ 1.2
TRIM3-213ENST00000533309 SLIT1O75093 1534 aa22.55■■□□□ 1.2
TRIM3-213ENST00000533309 ARHGAP23Q9P227 1491 aa22.54■■□□□ 1.2
TRIM3-213ENST00000533309 NRXN3Q9Y4C0 1643 aa22.54■■□□□ 1.2
TRIM3-213ENST00000533309 C14orf93Q9H972 538 aaKnown RBP22.53■■□□□ 1.2
TRIM3-213ENST00000533309 SETD1AO15047 1707 aaKnown RBP22.53■■□□□ 1.2
TRIM3-213ENST00000533309 ASXL1Q8IXJ9 1541 aa22.51■■□□□ 1.19
TRIM3-213ENST00000533309 POLR1AO95602 1720 aaPredicted RBP22.51■■□□□ 1.19
TRIM3-213ENST00000533309 ALKQ9UM73 1620 aa22.5■■□□□ 1.19
TRIM3-213ENST00000533309 SCAF11Q99590 1463 aaKnown RBP22.5■■□□□ 1.19
TRIM3-213ENST00000533309 KDM4FA0A1W2PPD8 638 aa22.49■■□□□ 1.19
TRIM3-213ENST00000533309 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.49■■□□□ 1.19
TRIM3-213ENST00000533309 THEMISQ8N1K5 641 aaPredicted RBP22.46■■□□□ 1.19
TRIM3-213ENST00000533309 ST20-MTHFSA0A0A6YYL1 179 aa22.45■■□□□ 1.18
TRIM3-213ENST00000533309 LTKP29376 864 aa22.45■■□□□ 1.18
TRIM3-213ENST00000533309 HDGFP51858 240 aaKnown RBP22.44■■□□□ 1.18
TRIM3-213ENST00000533309 SENP3Q9H4L4 574 aaPredicted RBP22.43■■□□□ 1.18
TRIM3-213ENST00000533309 ARHGEF28Q8N1W1 1705 aaKnown RBP22.43■■□□□ 1.18
TRIM3-213ENST00000533309 TMEM132EQ6IEE7 984 aa22.42■■□□□ 1.18
TRIM3-213ENST00000533309 PLEKHG1Q9ULL1 1385 aa22.42■■□□□ 1.18
TRIM3-213ENST00000533309 C11orf95C9JLR9 678 aaPredicted RBP22.41■■□□□ 1.18
TRIM3-213ENST00000533309 TXNDC2Q86VQ3 553 aa22.4■■□□□ 1.18
TRIM3-213ENST00000533309 ADAMTS13Q76LX8 1427 aa22.39■■□□□ 1.18
TRIM3-213ENST00000533309 WASHC2AQ641Q2 1341 aa22.39■■□□□ 1.18
TRIM3-213ENST00000533309 EID1Q9Y6B2 187 aa22.39■■□□□ 1.17
TRIM3-213ENST00000533309 EIF3AQ14152 1382 aaKnown RBP22.38■■□□□ 1.17
TRIM3-213ENST00000533309 TESK2Q96S53 571 aa22.38■■□□□ 1.17
TRIM3-213ENST00000533309 MED14O60244 1454 aa22.37■■□□□ 1.17
TRIM3-213ENST00000533309 CCDC7Q96M83 1385 aa22.37■■□□□ 1.17
TRIM3-213ENST00000533309 YTHDC2Q9H6S0 1430 aaKnown RBP22.36■■□□□ 1.17
TRIM3-213ENST00000533309 QRICH2Q9H0J4 1663 aa22.35■■□□□ 1.17
TRIM3-213ENST00000533309 KIF7Q2M1P5 1343 aa22.34■■□□□ 1.17
TRIM3-213ENST00000533309 DIEXFQ68CQ4 756 aaKnown RBP22.34■■□□□ 1.17
TRIM3-213ENST00000533309 METP08581 1390 aa22.34■■□□□ 1.17
TRIM3-213ENST00000533309 KNDC1Q76NI1 1749 aa22.33■■□□□ 1.17
TRIM3-213ENST00000533309 DIP2AQ14689 1571 aa22.33■■□□□ 1.17
TRIM3-213ENST00000533309 TRAK1Q9UPV9 953 aa22.33■■□□□ 1.17
TRIM3-213ENST00000533309 DISP3Q9P2K9 1392 aa22.31■■□□□ 1.16
TRIM3-213ENST00000533309 DLC1Q96QB1 1528 aa22.3■■□□□ 1.16
TRIM3-213ENST00000533309 LRPPRCP42704 1394 aaKnown RBP22.3■■□□□ 1.16
TRIM3-213ENST00000533309 SBNO2Q9Y2G9 1366 aa22.3■■□□□ 1.16
TRIM3-213ENST00000533309 ANKLE2Q86XL3 938 aa22.29■■□□□ 1.16
TRIM3-213ENST00000533309 BCANQ96GW7 911 aa22.29■■□□□ 1.16
TRIM3-213ENST00000533309 CENPJQ9HC77 1338 aaPredicted RBP22.29■■□□□ 1.16
TRIM3-213ENST00000533309 DDX10Q13206 875 aaKnown RBP22.28■■□□□ 1.16
TRIM3-213ENST00000533309 STK26Q9P289 416 aa22.28■■□□□ 1.16
TRIM3-213ENST00000533309 LMTK3Q96Q04 1460 aa22.27■■□□□ 1.16
TRIM3-213ENST00000533309 CPS1P31327 1500 aa22.27■■□□□ 1.16
TRIM3-213ENST00000533309 ABCC11Q96J66 1382 aa22.27■■□□□ 1.16
TRIM3-213ENST00000533309 TECPR2O15040 1411 aa22.27■■□□□ 1.16
TRIM3-213ENST00000533309 SLC26A8Q96RN1 970 aa22.26■■□□□ 1.15
TRIM3-213ENST00000533309 TBX22Q9Y458 520 aa22.25■■□□□ 1.15
TRIM3-213ENST00000533309 PTPRUQ92729 1446 aa22.24■■□□□ 1.15
TRIM3-213ENST00000533309 TMF1P82094 1093 aa22.24■■□□□ 1.15
TRIM3-213ENST00000533309 XRN1Q8IZH2 1706 aaKnown RBP22.23■■□□□ 1.15
TRIM3-213ENST00000533309 NPHP4O75161 1426 aaPredicted RBP22.23■■□□□ 1.15
TRIM3-213ENST00000533309 TULP4Q9NRJ4 1543 aa22.21■■□□□ 1.15
TRIM3-213ENST00000533309 CHD2O14647 1828 aaKnown RBP22.2■■□□□ 1.14
TRIM3-213ENST00000533309 MYOM1P52179 1685 aa22.2■■□□□ 1.14
TRIM3-213ENST00000533309 PRAM1Q96QH2 718 aa22.2■■□□□ 1.14
TRIM3-213ENST00000533309 FAM135BQ49AJ0 1406 aa22.19■■□□□ 1.14
TRIM3-213ENST00000533309 NCKAP5LQ9HCH0 1330 aa22.19■■□□□ 1.14
TRIM3-213ENST00000533309 PLEKHH1Q9ULM0 1364 aa22.18■■□□□ 1.14
TRIM3-213ENST00000533309 PIK3R4Q99570 1358 aa22.18■■□□□ 1.14
TRIM3-213ENST00000533309 SLC24A1O60721 1099 aa22.17■■□□□ 1.14
TRIM3-213ENST00000533309 POLR3GLQ9BT43 218 aa22.17■■□□□ 1.14
TRIM3-213ENST00000533309 ROBO2Q9HCK4 1378 aa22.17■■□□□ 1.14
TRIM3-213ENST00000533309 HSPA2P54652 639 aa22.17■■□□□ 1.14
TRIM3-213ENST00000533309 STRCQ7RTU9 1775 aa22.16■■□□□ 1.14
TRIM3-213ENST00000533309 SAFB2Q14151 953 aaKnown RBP eCLIP22.16■■□□□ 1.14
TRIM3-213ENST00000533309 SIRT1Q96EB6 747 aa22.16■■□□□ 1.14
TRIM3-213ENST00000533309 WAPLQ7Z5K2 1190 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms