RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 KCNA6P17658 529 aa27.17■■□□□ 1.94
PCF11-206ENST00000533018 HDGFP51858 240 aaKnown RBP27.17■■□□□ 1.94
PCF11-206ENST00000533018 NUP155O75694 1391 aa27.17■■□□□ 1.94
PCF11-206ENST00000533018 E9PCH4 1651 aa27.17■■□□□ 1.94
PCF11-206ENST00000533018 SOCS7O14512 581 aa27.15■■□□□ 1.94
PCF11-206ENST00000533018 PROSER2Q86WR7 435 aaPredicted RBP27.14■■□□□ 1.94
PCF11-206ENST00000533018 IQGAP3Q86VI3 1631 aa27.14■■□□□ 1.94
PCF11-206ENST00000533018 RIMS2Q9UQ26 1411 aa27.13■■□□□ 1.93
PCF11-206ENST00000533018 TMEM131LA2VDJ0 1609 aa27.12■■□□□ 1.93
PCF11-206ENST00000533018 RBM33Q96EV2 1170 aaKnown RBP27.12■■□□□ 1.93
PCF11-206ENST00000533018 TMEM94Q12767 1356 aa27.11■■□□□ 1.93
PCF11-206ENST00000533018 MED1Q15648 1581 aaPredicted RBP27.1■■□□□ 1.93
PCF11-206ENST00000533018 ZFYVE9O95405 1425 aa27.09■■□□□ 1.93
PCF11-206ENST00000533018 NUTM2DQ5VT03 806 aaPredicted RBP27.08■■□□□ 1.93
PCF11-206ENST00000533018 PLEKHG1Q9ULL1 1385 aa27.08■■□□□ 1.93
PCF11-206ENST00000533018 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.07■■□□□ 1.92
PCF11-206ENST00000533018 PHF23Q9BUL5 403 aaPredicted RBP27.05■■□□□ 1.92
PCF11-206ENST00000533018 NKTRP30414 1462 aaKnown RBP27.02■■□□□ 1.92
PCF11-206ENST00000533018 NWD1Q149M9 1564 aa27.01■■□□□ 1.92
PCF11-206ENST00000533018 CHD2O14647 1828 aaKnown RBP27.01■■□□□ 1.91
PCF11-206ENST00000533018 TBX22Q9Y458 520 aa26.99■■□□□ 1.91
PCF11-206ENST00000533018 RRBP1Q9P2E9 1410 aaKnown RBP26.99■■□□□ 1.91
PCF11-206ENST00000533018 MSH6P52701 1360 aa26.98■■□□□ 1.91
PCF11-206ENST00000533018 FAM135BQ49AJ0 1406 aa26.97■■□□□ 1.91
PCF11-206ENST00000533018 SPHKAPQ2M3C7 1700 aa26.96■■□□□ 1.91
PCF11-206ENST00000533018 ZNF326Q5BKZ1 582 aaKnown RBP26.95■■□□□ 1.9
PCF11-206ENST00000533018 C14orf37Q86TY3 774 aa26.95■■□□□ 1.9
PCF11-206ENST00000533018 ROBO1Q9Y6N7 1651 aa26.94■■□□□ 1.9
PCF11-206ENST00000533018 ADAMTS13Q76LX8 1427 aa26.91■■□□□ 1.9
PCF11-206ENST00000533018 SLAIN2Q9P270 581 aa26.91■■□□□ 1.9
PCF11-206ENST00000533018 TRIM52Q96A61 297 aa26.9■■□□□ 1.9
PCF11-206ENST00000533018 NAIPQ13075 1403 aa26.9■■□□□ 1.9
PCF11-206ENST00000533018 DIP2AQ14689 1571 aa26.89■■□□□ 1.9
PCF11-206ENST00000533018 PIK3R4Q99570 1358 aa26.86■■□□□ 1.89
PCF11-206ENST00000533018 TRPM2O94759 1503 aa26.85■■□□□ 1.89
PCF11-206ENST00000533018 AMOTL2Q9Y2J4 779 aa26.85■■□□□ 1.89
PCF11-206ENST00000533018 NCOA3Q9Y6Q9 1424 aa26.82■■□□□ 1.88
PCF11-206ENST00000533018 KIF1BO60333 1816 aa26.81■■□□□ 1.88
PCF11-206ENST00000533018 CLTCL1P53675 1640 aa26.81■■□□□ 1.88
PCF11-206ENST00000533018 ATF3P18847 181 aa26.81■■□□□ 1.88
PCF11-206ENST00000533018 PHLPP1O60346 1717 aa26.8■■□□□ 1.88
PCF11-206ENST00000533018 C19orf44Q9H6X5 657 aa26.8■■□□□ 1.88
PCF11-206ENST00000533018 HFM1A2PYH4 1435 aa26.8■■□□□ 1.88
PCF11-206ENST00000533018 CADPS2Q86UW7 1296 aa26.79■■□□□ 1.88
PCF11-206ENST00000533018 SLC4A1APQ9BWU0 796 aaKnown RBP26.78■■□□□ 1.88
PCF11-206ENST00000533018 PTPRUQ92729 1446 aa26.78■■□□□ 1.88
PCF11-206ENST00000533018 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.78■■□□□ 1.88
PCF11-206ENST00000533018 NRXN3Q9Y4C0 1643 aa26.76■■□□□ 1.87
PCF11-206ENST00000533018 SETBP1Q9Y6X0 1596 aa26.75■■□□□ 1.87
PCF11-206ENST00000533018 NEXMIFQ5QGS0 1516 aa26.73■■□□□ 1.87
PCF11-206ENST00000533018 RGS17Q9UGC6 210 aaPredicted RBP26.72■■□□□ 1.87
PCF11-206ENST00000533018 METP08581 1390 aa26.71■■□□□ 1.87
PCF11-206ENST00000533018 JCADQ9P266 1359 aa26.69■■□□□ 1.86
PCF11-206ENST00000533018 XRN1Q8IZH2 1706 aaKnown RBP26.68■■□□□ 1.86
PCF11-206ENST00000533018 VGFO15240 615 aaPredicted RBP26.67■■□□□ 1.86
PCF11-206ENST00000533018 FOXD1Q16676 465 aa26.65■■□□□ 1.86
PCF11-206ENST00000533018 COL16A1Q07092 1604 aaPredicted RBP26.65■■□□□ 1.86
PCF11-206ENST00000533018 BRINP3Q76B58 766 aa26.62■■□□□ 1.85
PCF11-206ENST00000533018 DCCP43146 1447 aa26.61■■□□□ 1.85
PCF11-206ENST00000533018 RPGRIP1LQ68CZ1 1315 aa26.61■■□□□ 1.85
PCF11-206ENST00000533018 POTEAQ6S8J7 498 aa26.6■■□□□ 1.85
PCF11-206ENST00000533018 AHDC1Q5TGY3 1603 aaPredicted RBP26.59■■□□□ 1.85
PCF11-206ENST00000533018 MEX3CQ5U5Q3 659 aaKnown RBP26.59■■□□□ 1.85
PCF11-206ENST00000533018 PPLO60437 1756 aa26.56■■□□□ 1.84
PCF11-206ENST00000533018 MPHOSPH9Q99550 1183 aa26.56■■□□□ 1.84
PCF11-206ENST00000533018 SPATA31A6Q5VVP1 1343 aa26.56■■□□□ 1.84
PCF11-206ENST00000533018 MST1RQ04912 1400 aa26.56■■□□□ 1.84
PCF11-206ENST00000533018 CCDC144AA2RUR9 1427 aa26.55■■□□□ 1.84
PCF11-206ENST00000533018 ADGRL3Q9HAR2 1447 aa26.55■■□□□ 1.84
PCF11-206ENST00000533018 NALCNQ8IZF0 1738 aa26.54■■□□□ 1.84
PCF11-206ENST00000533018 RGL3Q3MIN7 710 aa26.54■■□□□ 1.84
PCF11-206ENST00000533018 ASXL1Q8IXJ9 1541 aa26.54■■□□□ 1.84
PCF11-206ENST00000533018 SETD1AO15047 1707 aaKnown RBP26.52■■□□□ 1.84
PCF11-206ENST00000533018 SHPRHQ149N8 1683 aa26.52■■□□□ 1.84
PCF11-206ENST00000533018 NUTM2BA6NNL0 878 aaPredicted RBP26.5■■□□□ 1.83
PCF11-206ENST00000533018 NUTM2EB1AL46 878 aaPredicted RBP26.5■■□□□ 1.83
PCF11-206ENST00000533018 NUTM2AQ8IVF1 878 aaPredicted RBP26.5■■□□□ 1.83
PCF11-206ENST00000533018 LRP6O75581 1613 aa26.49■■□□□ 1.83
PCF11-206ENST00000533018 PTCH1Q13635 1447 aa26.48■■□□□ 1.83
PCF11-206ENST00000533018 ROBO2Q9HCK4 1378 aa26.48■■□□□ 1.83
PCF11-206ENST00000533018 DDX17Q92841 729 aaKnown RBP26.48■■□□□ 1.83
PCF11-206ENST00000533018 LRRC59Q96AG4 307 aaKnown RBP26.46■■□□□ 1.83
PCF11-206ENST00000533018 NHSL1Q5SYE7 1610 aa26.46■■□□□ 1.83
PCF11-206ENST00000533018 ADGRF5Q8IZF2 1346 aa26.45■■□□□ 1.83
PCF11-206ENST00000533018 C1orf167Q5SNV9 1468 aa26.43■■□□□ 1.82
PCF11-206ENST00000533018 ZNF772Q68DY9 489 aaPredicted RBP26.43■■□□□ 1.82
PCF11-206ENST00000533018 SETD5Q9C0A6 1442 aa26.42■■□□□ 1.82
PCF11-206ENST00000533018 STK26Q9P289 416 aa26.42■■□□□ 1.82
PCF11-206ENST00000533018 ACIN1Q9UKV3 1341 aaKnown RBP26.41■■□□□ 1.82
PCF11-206ENST00000533018 ANKRD30BQ9BXX2 1392 aa26.41■■□□□ 1.82
PCF11-206ENST00000533018 SPATA31E1Q6ZUB1 1445 aa26.4■■□□□ 1.82
PCF11-206ENST00000533018 ORAI2Q96SN7 254 aa26.39■■□□□ 1.82
PCF11-206ENST00000533018 IFT172Q9UG01 1749 aa26.38■■□□□ 1.81
PCF11-206ENST00000533018 PRAG1Q86YV5 1406 aa26.37■■□□□ 1.81
PCF11-206ENST00000533018 TMEM132EQ6IEE7 984 aa26.35■■□□□ 1.81
PCF11-206ENST00000533018 WAPLQ7Z5K2 1190 aa26.33■■□□□ 1.81
PCF11-206ENST00000533018 PNPLA6Q8IY17 1366 aa26.33■■□□□ 1.8
PCF11-206ENST00000533018 ESCO1Q5FWF5 840 aa26.32■■□□□ 1.8
PCF11-206ENST00000533018 C8orf37Q96NL8 207 aa26.32■■□□□ 1.8
PCF11-206ENST00000533018 AFF2P51816 1311 aa26.32■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms