RNA–Protein interactions for RNA: ENST00000531158.1

CHMP4A-205, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 4

Gene CHMP4A, Length 563 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-205ENST00000531158 ZFYVE9O95405 1425 aa14.49□□□□□ -0.09
CHMP4A-205ENST00000531158 PHLPP1O60346 1717 aa14.49□□□□□ -0.09
CHMP4A-205ENST00000531158 KANK1Q14678 1352 aa14.49□□□□□ -0.09
CHMP4A-205ENST00000531158 ANKRD30AQ9BXX3 1397 aa14.49□□□□□ -0.09
CHMP4A-205ENST00000531158 E9PCH4 1651 aa14.49□□□□□ -0.09
CHMP4A-205ENST00000531158 UNC13BO14795 1591 aa14.49□□□□□ -0.09
CHMP4A-205ENST00000531158 SLC26A8Q96RN1 970 aa14.49□□□□□ -0.09
CHMP4A-205ENST00000531158 EID1Q9Y6B2 187 aa14.49□□□□□ -0.09
CHMP4A-205ENST00000531158 KCNA6P17658 529 aa14.47□□□□□ -0.09
CHMP4A-205ENST00000531158 COL16A1Q07092 1604 aaPredicted RBP14.47□□□□□ -0.09
CHMP4A-205ENST00000531158 RPRD2Q5VT52 1461 aaKnown RBP14.46□□□□□ -0.09
CHMP4A-205ENST00000531158 STAG3Q9UJ98 1225 aa14.44□□□□□ -0.1
CHMP4A-205ENST00000531158 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.44□□□□□ -0.1
CHMP4A-205ENST00000531158 ANKRD50Q9ULJ7 1429 aa14.43□□□□□ -0.1
CHMP4A-205ENST00000531158 IQGAP3Q86VI3 1631 aa14.43□□□□□ -0.1
CHMP4A-205ENST00000531158 ZNF772Q68DY9 489 aaPredicted RBP14.42□□□□□ -0.1
CHMP4A-205ENST00000531158 PROSER2Q86WR7 435 aaPredicted RBP14.42□□□□□ -0.1
CHMP4A-205ENST00000531158 PLEKHG1Q9ULL1 1385 aa14.42□□□□□ -0.1
CHMP4A-205ENST00000531158 RIMS2Q9UQ26 1411 aa14.41□□□□□ -0.1
CHMP4A-205ENST00000531158 MEX3CQ5U5Q3 659 aaKnown RBP14.4□□□□□ -0.1
CHMP4A-205ENST00000531158 SLC52A1Q9NWF4 448 aa14.4□□□□□ -0.1
CHMP4A-205ENST00000531158 LRP6O75581 1613 aa14.4□□□□□ -0.1
CHMP4A-205ENST00000531158 NRXN3Q9Y4C0 1643 aa14.4□□□□□ -0.1
CHMP4A-205ENST00000531158 ADAMTS13Q76LX8 1427 aa14.4□□□□□ -0.1
CHMP4A-205ENST00000531158 RXRBP28702 533 aa14.39□□□□□ -0.11
CHMP4A-205ENST00000531158 SHPRHQ149N8 1683 aa14.39□□□□□ -0.11
CHMP4A-205ENST00000531158 DIP2AQ14689 1571 aa14.39□□□□□ -0.11
CHMP4A-205ENST00000531158 MSH6P52701 1360 aa14.38□□□□□ -0.11
CHMP4A-205ENST00000531158 JCADQ9P266 1359 aa14.38□□□□□ -0.11
CHMP4A-205ENST00000531158 APLP2Q06481 763 aa14.37□□□□□ -0.11
CHMP4A-205ENST00000531158 XRN1Q8IZH2 1706 aaKnown RBP14.37□□□□□ -0.11
CHMP4A-205ENST00000531158 AHDC1Q5TGY3 1603 aaPredicted RBP14.37□□□□□ -0.11
CHMP4A-205ENST00000531158 SLAIN2Q9P270 581 aa14.36□□□□□ -0.11
CHMP4A-205ENST00000531158 SPHKAPQ2M3C7 1700 aa14.35□□□□□ -0.11
CHMP4A-205ENST00000531158 FAM50AQ14320 339 aaKnown RBP14.35□□□□□ -0.11
CHMP4A-205ENST00000531158 PTPRUQ92729 1446 aa14.33□□□□□ -0.11
CHMP4A-205ENST00000531158 TRPM2O94759 1503 aa14.32□□□□□ -0.12
CHMP4A-205ENST00000531158 NUTM2DQ5VT03 806 aaPredicted RBP14.32□□□□□ -0.12
CHMP4A-205ENST00000531158 BCANQ96GW7 911 aa14.32□□□□□ -0.12
CHMP4A-205ENST00000531158 ZRANB1Q9UGI0 708 aa14.32□□□□□ -0.12
CHMP4A-205ENST00000531158 TBX22Q9Y458 520 aa14.32□□□□□ -0.12
CHMP4A-205ENST00000531158 NHSL1Q5SYE7 1610 aa14.32□□□□□ -0.12
CHMP4A-205ENST00000531158 NCOA3Q9Y6Q9 1424 aa14.32□□□□□ -0.12
CHMP4A-205ENST00000531158 SPATA31A6Q5VVP1 1343 aa14.31□□□□□ -0.12
CHMP4A-205ENST00000531158 NALCNQ8IZF0 1738 aa14.3□□□□□ -0.12
CHMP4A-205ENST00000531158 PPP1R15AO75807 674 aaPredicted RBP14.3□□□□□ -0.12
CHMP4A-205ENST00000531158 FOXD1Q16676 465 aa14.3□□□□□ -0.12
CHMP4A-205ENST00000531158 ROCK1Q13464 1354 aa14.3□□□□□ -0.12
CHMP4A-205ENST00000531158 SETBP1Q9Y6X0 1596 aa14.3□□□□□ -0.12
CHMP4A-205ENST00000531158 CDK12Q9NYV4 1490 aaPredicted RBP14.29□□□□□ -0.12
CHMP4A-205ENST00000531158 PIK3R4Q99570 1358 aa14.28□□□□□ -0.12
CHMP4A-205ENST00000531158 CLTCL1P53675 1640 aa14.27□□□□□ -0.12
CHMP4A-205ENST00000531158 ASXL1Q8IXJ9 1541 aa14.27□□□□□ -0.12
CHMP4A-205ENST00000531158 NUTM2BA6NNL0 878 aaPredicted RBP14.27□□□□□ -0.13
CHMP4A-205ENST00000531158 NUTM2EB1AL46 878 aaPredicted RBP14.27□□□□□ -0.13
CHMP4A-205ENST00000531158 NUTM2AQ8IVF1 878 aaPredicted RBP14.27□□□□□ -0.13
CHMP4A-205ENST00000531158 CHGAP10645 457 aaKnown RBP14.26□□□□□ -0.13
CHMP4A-205ENST00000531158 NEXMIFQ5QGS0 1516 aa14.25□□□□□ -0.13
CHMP4A-205ENST00000531158 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.25□□□□□ -0.13
CHMP4A-205ENST00000531158 MST1RQ04912 1400 aa14.24□□□□□ -0.13
CHMP4A-205ENST00000531158 C19orf44Q9H6X5 657 aa14.24□□□□□ -0.13
CHMP4A-205ENST00000531158 KIF1BO60333 1816 aa14.24□□□□□ -0.13
CHMP4A-205ENST00000531158 DCCP43146 1447 aa14.24□□□□□ -0.13
CHMP4A-205ENST00000531158 NUP155O75694 1391 aa14.23□□□□□ -0.13
CHMP4A-205ENST00000531158 HDGFP51858 240 aaKnown RBP14.23□□□□□ -0.13
CHMP4A-205ENST00000531158 BRINP3Q76B58 766 aa14.23□□□□□ -0.13
CHMP4A-205ENST00000531158 AMOTL2Q9Y2J4 779 aa14.23□□□□□ -0.13
CHMP4A-205ENST00000531158 C14orf37Q86TY3 774 aa14.22□□□□□ -0.13
CHMP4A-205ENST00000531158 CADPS2Q86UW7 1296 aa14.22□□□□□ -0.13
CHMP4A-205ENST00000531158 RGS12O14924 1447 aa14.22□□□□□ -0.13
CHMP4A-205ENST00000531158 LAMC1P11047 1609 aa14.22□□□□□ -0.13
CHMP4A-205ENST00000531158 METP08581 1390 aa14.22□□□□□ -0.13
CHMP4A-205ENST00000531158 AFF2P51816 1311 aa14.21□□□□□ -0.13
CHMP4A-205ENST00000531158 ATF3P18847 181 aa14.2□□□□□ -0.14
CHMP4A-205ENST00000531158 SETD5Q9C0A6 1442 aa14.2□□□□□ -0.14
CHMP4A-205ENST00000531158 RBM6P78332 1123 aaKnown RBP14.19□□□□□ -0.14
CHMP4A-205ENST00000531158 QTRT2Q9H974 415 aaKnown RBP14.19□□□□□ -0.14
CHMP4A-205ENST00000531158 ADGRL3Q9HAR2 1447 aa14.18□□□□□ -0.14
CHMP4A-205ENST00000531158 ATAD2Q6PL18 1390 aa14.18□□□□□ -0.14
CHMP4A-205ENST00000531158 PPLO60437 1756 aa14.17□□□□□ -0.14
CHMP4A-205ENST00000531158 ITGAEP38570 1179 aa14.16□□□□□ -0.14
CHMP4A-205ENST00000531158 DDX17Q92841 729 aaKnown RBP14.15□□□□□ -0.14
CHMP4A-205ENST00000531158 PNPLA6Q8IY17 1366 aa14.14□□□□□ -0.15
CHMP4A-205ENST00000531158 PPARGC1BQ86YN6 1023 aaKnown RBP14.13□□□□□ -0.15
CHMP4A-205ENST00000531158 C8orf37Q96NL8 207 aa14.13□□□□□ -0.15
CHMP4A-205ENST00000531158 MARF1Q9Y4F3 1742 aaKnown RBP14.12□□□□□ -0.15
CHMP4A-205ENST00000531158 COL22A1Q8NFW1 1626 aaPredicted RBP14.12□□□□□ -0.15
CHMP4A-205ENST00000531158 NGLY1Q96IV0 654 aa14.12□□□□□ -0.15
CHMP4A-205ENST00000531158 EP400Q96L91 3159 aa14.12□□□□□ -0.15
CHMP4A-205ENST00000531158 C1orf167Q5SNV9 1468 aa14.12□□□□□ -0.15
CHMP4A-205ENST00000531158 NAIPQ13075 1403 aa14.11□□□□□ -0.15
CHMP4A-205ENST00000531158 PTCH1Q13635 1447 aa14.11□□□□□ -0.15
CHMP4A-205ENST00000531158 PRAG1Q86YV5 1406 aa14.11□□□□□ -0.15
CHMP4A-205ENST00000531158 ROBO2Q9HCK4 1378 aa14.1□□□□□ -0.15
CHMP4A-205ENST00000531158 IFT172Q9UG01 1749 aa14.1□□□□□ -0.15
CHMP4A-205ENST00000531158 ZNF326Q5BKZ1 582 aaKnown RBP14.1□□□□□ -0.15
CHMP4A-205ENST00000531158 RRBP1Q9P2E9 1410 aaKnown RBP14.08□□□□□ -0.15
CHMP4A-205ENST00000531158 CCDC125Q86Z20 511 aa14.08□□□□□ -0.16
CHMP4A-205ENST00000531158 LRRC59Q96AG4 307 aaKnown RBP14.07□□□□□ -0.16
CHMP4A-205ENST00000531158 CDC42BPGQ6DT37 1551 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 148.6 ms